Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06320 LG1 93631188 93632507 PREDICTED: homeobox-leucine zipper protein HAT4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of transcription, DNA-templated, root development, negative regulation of transcription, DNA-templated, response to cytokinin, shade avoidance, red or far-red light signaling pathway, response to cytokinin, response to far red light, shoot system morphogenesis, response to auxin, unidimensional cell growth, negative regulation of transcription, DNA-templated, secondary thickening, red or far-red light signaling pathway, root development, unidimensional cell growth, lateral root formation, red or far-red light signaling pathway, unidimensional cell growth, response to auxin, lateral root formation, red or far-red light signaling pathway, negative regulation of transcription, DNA-templated, lateral root formation, shoot system morphogenesis
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, protein binding, protein binding, protein homodimerization activity, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/A 93631270 missense_variant p.Ala268Ser
C/G 93631336 missense_variant p.Gly246Arg
A/T 93631426 missense_variant p.Ser216Thr
C/A 93631452 missense_variant p.Arg207Met
C/A 93631618 missense_variant p.Gln180His
A/G 93631621 synonymous_variant p.Phe179Phe
C/T 93631636 synonymous_variant p.Gln174Gln
G/C 93631643 missense_variant p.Pro172Arg
G/A 93631644 missense_variant p.Pro172Ser
C/T 93631653 missense_variant p.Gly169Ser
G/A 93631686 splice_region_variant&intron_variant
C/T 93631708 intron_variant
C/T 93631715 intron_variant
G/A 93631720 intron_variant
C/T 93631744 intron_variant
A/G 93631750 intron_variant
G/A 93631754 intron_variant
T/G 93631758 intron_variant
T/A 93631772 intron_variant
C/A 93631784 stop_gained&splice_region_variant p.Glu159*
G/T 93631785 splice_region_variant&synonymous_variant p.Pro158Pro
G/A 93631822 missense_variant p.Ser146Phe
G/A 93631827 synonymous_variant p.Ser144Ser
G/A 93631841 stop_gained p.Gln140*
C/T 93631848 synonymous_variant p.Glu137Glu
C/G 93631850 missense_variant p.Glu137Gln
C/G,* 93631873 missense_variant p.Arg129Pro
C/T 93631887 synonymous_variant p.Gln124Gln
T/A 93631907 missense_variant p.Ser118Cys
C/T 93631908 synonymous_variant p.Gln117Gln
G/A 93631910 stop_gained p.Gln117*
C/T 93631927 missense_variant p.Arg111Gln
G/A 93631928 stop_gained p.Arg111*
C/T 93631930 missense_variant p.Arg110Gln
T/C 93631952 missense_variant p.Thr103Ala
C/T 93631956 synonymous_variant p.Arg101Arg
C/T 93631961 missense_variant p.Glu100Lys
C/T 93631977 synonymous_variant p.Gln94Gln
C/T 93631982 missense_variant p.Glu93Lys
C/T 93631996 missense_variant p.Gly88Glu
C/T 93632008 missense_variant p.Gly84Glu
C/G 93632014 missense_variant p.Gly82Ala
C/T 93632017 missense_variant p.Arg81His
G/A 93632018 missense_variant p.Arg81Cys
C/A 93632036 stop_gained p.Glu75*
C/T 93632051 missense_variant p.Ala70Thr
A/G 93632055 synonymous_variant p.Val68Val
C/T 93632057 missense_variant p.Val68Ile
G/A 93632063 missense_variant p.Pro66Ser
C/T 93632068 missense_variant p.Arg64Gln
G/A 93632069 stop_gained p.Arg64*
G/A 93632092 missense_variant&splice_region_variant p.Ala56Val
A/T 93632109 intron_variant
G/A 93632137 intron_variant
C/G 93632150 intron_variant
G/A 93632163 intron_variant
C/T 93632178 intron_variant
G/T 93632229 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06320.1
MMVQKEDLGLSLSLNFRHNIPNPQHLTLISSSTHSSSPSASNPFKPSWNDAFASSDRNSDSCRGETRSFLRGIDVNRLPSAVDMEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMNRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSTVDAATRHHPMGQAQSHSRALGMGPWGSAASIPQRGFDGFHH*


CDS Sequence:
>Vu_06320.1
ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCGTCACAATATTCCCAATCCTCAACATCTTACTCTCATCTCCTCCTCTACTCATTCGTCTTCCCCTTCCGCTTCAAATCCTTTTAAACCGTCTTGGAACGACGCTTTCGCCTCCTCCGATCGAAACTCGGACTCATGCAGAGGCGAAACCCGATCGTTCCTGCGCGGAATCGACGTGAATCGGTTACCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAACGAAGCGAGCGAGAACCCAACGGCGAAGAACACGACATGAACAGAGCCTGTTCCCGCGGAATCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAACTGAGACTCTCCAAAGACCAATCAGCTATTCTGGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGAAGCAAAAACTTGCACTGGCAAAACAGCTAGGCCTTCTACCAAGACAGGTTGAGGTGTGGTTTCAGAACCGAAGAGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTCCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCTCCCACCACACTGACCATGTGCCCATCTTGCGAGCGGGTGGCTGTGCCGTCGTCGACCGTGGATGCCGCCACGCGTCATCATCCCATGGGCCAGGCCCAGAGCCACAGTCGGGCCCTAGGCATGGGGCCGTGGGGTTCGGCAGCTTCCATTCCGCAGCGGGGCTTCGATGGTTTCCACCACTGA


Promoter Sequence:
>Vu_06320::LG1:93632507-93634507(-)
GATGAGAGTTACACGTACTCATTTACTACCATTTACAATGTGAGTTTTTTTTTTGTTTCTTTTGCAATTTATGAGATTGATGTCTTCGGCATAAGGAAAATTGATTATGTTGTGCTACTTTACCAAATGCATGTTGGTGTTGAAAAGTGACATATGTATAGGAAGGAAGAAAGCTTGAATTTATTTAAAAAAAAAATGTATGTAAAGGTGTGAAAAAGAATAATATAATTTAATAGTAAAAATGGTTAAAAGGAGGAGTGAAGAGACGTAAGGTATTGTGGCACGTGTAGTGCAGAGGCATGTTGGTTCATGTGAGGGTGAGTTGGGGGCAGGTTTTTTCTTCCACGCTTGCTTCATCGTCGCTCCACGTGAATACCAATCGCACTTGTCCCCCTCACTGTTTCTTCACTTTCTTAACTTCAGTTGAGACTCACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAAAAAAAATAAATCTCGTATTTCCCCACTCCCATGATTGGATAGGCCTGCAAAAATAAGTATTCGTAGAATAAAATGTTTTAACCTAACTCTCGGAAAACCAGAGGTACAACATAAGAAAACAAGATGGTGGTTCTTTGAACCTAACTCATTAATTTGAAGCATGGTGAAGGAAGGAAGAGGCGCGTTGGTGCGACGCGCGGGTGGTGTGAGGAGAAGAGGAAGAAAGAGGTGTGTTTGTTTTGATTTAAATTTGAAGAGTGACGGGGCACAGGGTGTGTGATAGAAGAAAAGAAAAAGTTAGGGAAAGCGACGTTGTTGGCTGGGGGGAAGACCCTCGTGGTGATCGCATGGGTGGAGATTTGTGTGTCGCGTAGGATAAGGGATAATGGGGTCCCACTCAGGGACAACCCAAATATAATGAAAAGGTTATCTGTTTGCTTCCAATCATGACCATTGGCTGTGCTGATTTTGATGGATGTCCAGGGACGATGCTCATCATGTCTGTTCCTACATCTCACATTTTACCTCAGCCGTTGATTTAGGAACTCATTCACCCCTGGCCCAAATCTTCAGGTGCCACCTGCCCCACCCTGTTTAATGCTCAAGATTTCTTGCGATTTGCCACCCCCACACTCTCTCTATCCTACCTAAACCTAACTCCGTTTATTTTCCTTTTTACATTTTCATCAAACTCACCACCCTGTTACCTCATTGCACATTCCTGGCTAATCATAATATCATAAACTCGTTTATCACTTTTATAACATCGCACATGTTAATTCCATAACCGGTCTTATCAGCCGTGTTAGCAAAACTTTAGAAAAGGAAAAGCAGTATGATCGGCCAAAACAATATGACATGAAGAATGATGTGATGTATATAGTTATCGTCTTATCAGAAAGGCTTTCAGAAATCAGCTTCCTTTGCTTGATGGCTCAATAGTGTGAAATAACAGAGTCCTGGATGTAAATTCAAATTTGAAAAGGGGATATCGTTTTCATATGTTTTCCTGGCTGTGTTCCACTACTGGTTTGATCGGGCATTTAAGGCAGACAGAGTAAAAAACATGGTCAATGGAATTAGTTGTTGTGTTGTGGAGAGGGAGTTATCCAGGAAAGATGGCGTGAAAGTTATCCAAAAAGATGAGAGTGTGAAAGTAAAGTTGAATAAAGTGGAGTTTATTTACCAGATGGTCAAAGGTAAAGAATAAAGAGGTGTGACGAAGGAGGGGGAAGAGAGAGAAAGGAGGTGGGTGGTATTATTTTGGAGGCAAATGTCATGATTGAGATAACTGGGCTTGCTGACATAAAGTCATCATTGAACTTACACACTACTTCCACCCATTCTCTCTCTTTTCTATATAATCTCAACCCACACGGCCCCCTTTCCACTCCTCCACAACTCCCCTGCTTTTCATCATCGTCATCCCCTTCTTACTCTCTCTCTCTCAACTGCACCTCAATCTCACTCCCTCGTTACCCAACTTCTTCAGCGGCTAAATTTTATAAAACTAGAT


Gene Sequence:
>Vu_06320(-)
ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCGTCACAATATTCCCAATCCTCAACATCTTACTCTCATCTCCTCCTCTACTCATTCGTCTTCCCCTTCCGCTTCAAATCCTTTTAAACCGTCTTGGAACGACGCTTTCGCCTCCTCCGGTATGTCCTAAAATTCCTCCACTTTCCAAATAACTAGATAAAAATAATACTTTTCCTTTTTATTTGCATGCAAACAATGTTCCAGATCTGTTCAAGTTTATCTCTTTATTTCCTTTCTCTCCACCACTTTGATCCGGCTTACTGGGTCTCCTTTTTTGTTCCGGGGAGAGAAATATTACTCTCGCCCTTCAGTTTCTGTCCCGACATCCGTGACCCTCTAATTTAATGGTTTTTTGTTTGCATCCAGATCGAAACTCGGACTCATGCAGAGGCGAAACCCGATCGTTCCTGCGCGGAATCGACGTGAATCGGTTACCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAACGAAGCGAGCGAGAACCCAACGGCGAAGAACACGACATGAACAGAGCCTGTTCCCGCGGAATCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAACTGAGACTCTCCAAAGACCAATCAGCTATTCTGGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGGTAAGCTTAACAGAAAACCACCTTAAAATCAGTTATTACGTTTTTGTTGGTACTAAACTAAAACCGCTGATTAACGTTAATTAATTTAATGTTCTGGCAGAAGCAAAAACTTGCACTGGCAAAACAGCTAGGCCTTCTACCAAGACAGGTTGAGGTGTGGTTTCAGAACCGAAGAGCAAGGTCAGTTTACAAATTATACAACACATGAAATAAATGGGTTCAATACAAAGTTTAGTTTTATTAAACGTTGTGGAACTAATTCCAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTCCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCTCCCACCACACTGACCATGTGCCCATCTTGCGAGCGGGTGGCTGTGCCGTCGTCGACCGTGGATGCCGCCACGCGTCATCATCCCATGGGCCAGGCCCAGAGCCACAGTCGGGCCCTAGGCATGGGGCCGTGGGGTTCGGCAGCTTCCATTCCGCAGCGGGGCTTCGATGGTTTCCACCACTGA