Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06426 LG1 94996088 94996893 LRR receptor-like serine/threonine-protein kinase HSL2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to Gram-negative bacterium, protein phosphorylation, defense response to Gram-negative bacterium, protein phosphorylation, lateral root morphogenesis, protein phosphorylation, leaf abscission, lateral root morphogenesis, lateral root morphogenesis, regulation of gene expression, defense response to Gram-negative bacterium
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding, protein serine/threonine kinase activity, protein binding, kinase activity, protein binding, protein binding, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
G/T 94996174 upstream_gene_variant
G/A 94996228 upstream_gene_variant
A/C 94996282 upstream_gene_variant
T/A 94996298 upstream_gene_variant
T/C 94996309 upstream_gene_variant
T/C,* 94996353 upstream_gene_variant
G/*,T 94996360 upstream_gene_variant
G/A 94996440 upstream_gene_variant
T/C 94996455 upstream_gene_variant
G/A 94996478 upstream_gene_variant
C/T 94996543 upstream_gene_variant
T/C 94996544 upstream_gene_variant
A/G 94996545 upstream_gene_variant
T/A 94996556 upstream_gene_variant
G/A 94996573 upstream_gene_variant
C/T,* 94996633 upstream_gene_variant
A/T 94996634 upstream_gene_variant
C/T 94996645 upstream_gene_variant
C/T,A 94996679 upstream_gene_variant
T/A 94996686 upstream_gene_variant
T/A 94996694 splice_region_variant&intron_variant
T/C 94996696 splice_region_variant&intron_variant
C/T 94996719 synonymous_variant p.Asn18Asn
G/A 94996721 missense_variant p.Ser19Asn
T/C 94996728 synonymous_variant p.Ile21Ile
C/A 94996783 missense_variant p.Arg40Ser
C/T 94996793 missense_variant p.Thr43Met
C/T 94996796 missense_variant p.Ser44Phe
C/T 94996811 missense_variant p.Ser49Leu
G/A 94996813 missense_variant p.Gly50Arg
G/A 94996818 synonymous_variant p.Thr51Thr
C/T 94996878 synonymous_variant p.Gly71Gly
C/T 94996888 missense_variant p.Arg75Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06426.1
MVCMEISQIAFQLKLFNNSFIGKLPQDLGQNSDIQDHFERLITSANRFSGTLPKQYDLTNLQPLAFAGEEGSPHR*


CDS Sequence:
>Vu_06426.1
ATGGTTTGTATGGAAATATCCCAAATAGCATTTCAGCTGAAACTCTTCAACAACAGCTTCATTGGGAAACTTCCACAAGATCTGGGACAAAACTCAGACATACAAGATCATTTCGAGCGTCTGATTACGTCTGCGAATCGCTTCTCAGGAACGCTCCCTAAGCAATACGATTTGACAAACCTCCAACCGCTTGCGTTTGCTGGCGAAGAAGGCTCACCGCACCGTTGA


Promoter Sequence:
>Vu_06426::LG1:94994088-94996088(+)
ACATAAAGTTAGATGAGGCTCCTAACTTCTGGAATATACAATTGATCAAGTGAAGACGTGAACACATAAAACATCAGAAAACTAGTAGATAGACCTCTTTCCAAAATTATAATACGCACATATGTAATGTAACCTAACCATACAAGCATCAATCTTTGACCCCCCACGGTTTAATTAAAATTGAATGTTCATATATTTGTTAATTGAGTATCATAAAAACTCTGACATATTCATTTTGTTCGTTGATGTACATCTTCTGAGGAAATACTCGACCAAGACCCTTACCTATAAAAATGTTGCGAAACTTTTTACACCGCATAAGAACCCGTATGCACATAATTTTCATCTCAAGTGTATTCGATTGAAATTGGTAAGTATTTTTTTTCCTCGACTTTTTTAAAATACGAATTGACTTCATACTCTTATTACCTATAGCAATCAAAGCTACACGTGGAACAATCAAGCATACACCCTGTTGAATGTTTGAACTAAAGAACCAATTTTTGGATGATGGGGCGCTTTAAATTGCTCTGAAGTTGACTTTAACAAGATATTGAAAAGGAAAAAAAAAAAACACAATCAAAAAGTATGAGTTAGGGCTTTTGGGATTGACCTGGTAAATGACGAGTACAATTAAGGCAATAAGGATAAAGAAGGAGATGAGCCACGCAAATATATCAGCCATGCTCCCTCCCTTCTCCTCTTTCTCTGGTTTTCGATTTCAGTTGCAGCACAACGCGTTCGAAACATGCGATGTTAATTGACACGATGGCAGTAGAAAGAGCTCGGACGCAGGGTGCACCTCACGAGAAGGAATACAGTAAAGAAACCTCGAAGGGTTTGGATTCGGCAGACAGACAAACACTCGGAGAAGCTAAGAATCGTGTGCCAACTTCACCATTTAAGGGTCCTTGCCAGTCCAACCGGGAAAAGAAAGGAAACAGTAAACCCTTTTATAAAGAATAAAAACTGAAAATAAAATCTTCATCTTTAATTTAAGTCAGGGCAATACAAATATTTTTACAATAACTTTAATTAGATTTAAAATACGTAATAAAATAATAAATAAATAACAAATCGGTGAAAAAAATAATACTTGAATTATATCAAAATATTATAAAAATTAGATTTAATATTTTGTATTAGGAAATTGGACGAAATCACTTACCTGATTACTTATTTGAAAGAATATATTTAAGGTTAAACCTCTTTTTTCCTATTTATATAGATTTTTTCCAGTTCGATAATTGTTATTTTATAAATTCCAATTGAGTCCTAGATAGTGTTAATTTGAATCAATTAGATCCTTATTGTTAAATTTGACTTAACGAAACTAAGTTTTTCTGAGATTGGAAGTTGATGTGACAAGTTTTTTAAACTTAAGCATTCACAGAGCTCTACGTGGAATTTAAAAACATTTTAACATTTTGATTAAAAAATAAAATAAAAAAGTCATCTTCCGTTAAAATCAAGCACCATCCAGAACTAGAGAACCCAATCGCGCAGAACCATCATCATCTTCCTCGTGCACCATCAACCTGCAATCAAGTAACCACAAAATCAAAATTGTGACTTTGCCATGTTCACTTTATTTCATCTCCTTCCATCCAGCACCACAAAGGCAAATCGCCACCATGGCCAACGTAACCAGTGCTTAAGCTCTTCGCACGCAACCGAACTCATCATCATCTATCTTCTTCTCCATTAAACCATTTGAAACTTGTAAATAGAAAACAGAATCACAAGTCTAAAAACCCCCAAATTAGTCACGAACCCTAAATCACGCTAGACACCAAAAACCAAACTTTCGAATCTTCATAAAACCAATTTCAATTCAAAGTCTACAATTGAAACCCCTAGAGAAGGTAGAAACCAAAACCACTGACAGCGTTAGGGTGAACCAGTCGGAGATCGAGATTCGGCGCCGCCTAAAGCTTCGCCGGCTCCTCCACCCACTATTGTAACCTCACCTCGCTCAAAAACTTGGAGTTATCAAAAAA


Gene Sequence:
>Vu_06426(+)
ATGGTTTGTATGGAAATATCCCAAATAGCATTTCAGGTCTGAAAAACGTTGAACAAATTGAACTATTTGAAAACCAGCTTTCCAGTGAATTACCTTAAGGTTTAGGAAACCTCAATAGTTTAATTCTCTTGGACCTCTCTGAGAACACTCTCACAGGGGTTGCTTTTGGTACAACTCCAAAAGGTCTCTTAACAATGGAGATATGTTATGTGTATATAAACTCATGTTCATCTCTTATTTTATCCGATGTGGGACTTTGTTTGTATCCAACAGCCTCCCCTCAAACAAAGGACCACCTCCCCTACAATGGAAGTCGATAAGATATCTCCACATACACATAGATATCTCCACAGTGATAAGATATTGTTTGCTTTGGGCCAAGCCCTCACGGATTTGCTTTTGGTACCACTCCAAAAGGCCTCAAAACAATGGAGATATGTTATGTGTATATAAACCTATGTTCATCTCTTATTTTATCCGATGTGGGACTTTGTTTGTACCCAACAACTACCACATGCAATAACCTCTTTGCGTCTCTATTCTCTCAACCTAAATGACAACCTTCTCGGAGGGGAATTCCTGAAACTTTAGCTTCAAATCCCAACCTGTATCAGCTGAAACTCTTCAACAACAGCTTCATTGGGAAACTTCCACAAGATCTGGGACAAAACTCAGACATACAAGATCATTTCGAGCGTCTGATTACGTCTGCGAATCGCTTCTCAGGAACGCTCCCTAAGCAATACGATTTGACAAACCTCCAACCGCTTGCGTTTGCTGGCGAAGAAGGCTCACCGCACCGTTGA