Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06546 LG1 96333279 96334829 PREDICTED: DELLA protein RGL1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of gibberellic acid mediated signaling pathway, regulation of transcription, DNA-templated, negative regulation of gibberellic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, salicylic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, salicylic acid mediated signaling pathway, response to ethylene, response to ethylene, negative regulation of seed germination, negative regulation of gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, regulation of seed dormancy process, salicylic acid mediated signaling pathway, response to gibberellin, jasmonic acid mediated signaling pathway, response to abscisic acid, negative regulation of gibberellic acid mediated signaling pathway, regulation of reactive oxygen species metabolic process, hyperosmotic salinity response, jasmonic acid mediated signaling pathway, response to salt stress, response to abscisic acid, regulation of transcription, DNA-templated, negative regulation of gibberellic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, regulation of reactive oxygen species metabolic process, response to gibberellin, response to abscisic acid, negative regulation of seed germination, salicylic acid mediated signaling pathway, regulation of reactive oxygen species metabolic process, hyperosmotic salinity response, gibberellic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to abscisic acid, regulation of reactive oxygen species metabolic process, gibberellic acid mediated signaling pathway, salicylic acid mediated signaling pathway, hyperosmotic salinity response, negative regulation of gibberellic acid mediated signaling pathway, response to ethylene, salicylic acid mediated signaling pathway, regulation of transcription, DNA-templated, response to salt stress, response to ethylene, regulation of transcription, DNA-templated, regulation of seed dormancy process, hyperosmotic salinity response, negative regulation of gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, regulation of seed dormancy process, gibberellic acid mediated signaling pathway, regulation of seed dormancy process, jasmonic acid mediated signaling pathway
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, transcription coregulator activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, sequence-specific DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/T 96333470 synonymous_variant p.Thr64Thr
A/G 96333773 synonymous_variant p.Ser165Ser
C/G 96334077 missense_variant p.Leu267Val
G/T 96334117 missense_variant p.Arg280Leu
A/T 96334274 missense_variant p.Glu332Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06546.1
MAPPQFGALNGEIDGENLSYVFDIWATDQYSCFPLQPISESNSCTLVLPYCDGSIRDNKRVKRTVGIPVDWLGNLMSNSHSFLNTNANNCNRSRDSIPKLHFRDHIRTYTQRYLAAEAEEEAPDDINSSESDGAEEDGCHDGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLIQPTGPVSPMPPMMNIMDTASEEMEEAFRLVYELCPHIQFGHFVTNSIVMEAFSGESFVHVVDFGMTLGLRHGHQWRELMRSLANGGSERLRRLRITAVGLCDRLQSIGDELSVYATNLGINFEFSVVKKNLESLKPEDIEVREEEVLAVNSILQLHCVVKESRGALNSVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSREGPLRMERHERVDQWRRRMSRAGFQAAPIKMVSQAKQWLLNGKVCEGYTVVEEKGCLVLGWKSKPIVAVSCWKC*


CDS Sequence:
>Vu_06546.1
ATGGCCCCTCCTCAGTTTGGTGCCTTGAACGGAGAAATCGATGGTGAAAATCTATCGTACGTGTTTGATATATGGGCAACCGATCAATATAGCTGTTTTCCTCTTCAACCTATTTCGGAGAGTAACAGTTGTACCTTAGTTCTCCCCTATTGTGACGGAAGCATAAGGGATAACAAAAGGGTGAAGAGAACGGTGGGAATCCCCGTTGACTGGTTAGGGAATTTGATGAGCAATTCCCACAGTTTCCTCAACACCAACGCCAACAACTGCAATAGGAGTAGGGATAGCATACCAAAGCTTCATTTCAGAGATCACATACGGACTTACACACAAAGATATCTGGCAGCGGAAGCAGAAGAAGAGGCACCAGACGACATAAATAGTTCAGAAAGTGATGGAGCTGAAGAAGACGGTTGTCATGACGGTGTGAGGCTGGTTCAACTTCTAATAGCATGTGCAGAAGCAGTGGCTTGTCGAGACAAATCGCACGCTTCAATATTACTATCAGAACTCAAAGCCAACGCTTTAGTATTCGGATCTTCGTTCCAAAGAGTTGCCTCTTGTTTTGTTCAAGGCCTAATTGAGAGGCTGAATCTGATTCAGCCCACCGGGCCAGTGAGCCCGATGCCACCTATGATGAACATTATGGACACAGCCTCCGAAGAAATGGAGGAAGCATTCAGATTGGTTTACGAGCTGTGTCCACACATCCAGTTCGGACACTTTGTCACTAATTCTATAGTGATGGAAGCCTTTTCGGGTGAGAGTTTTGTCCATGTAGTGGATTTCGGGATGACTCTCGGTTTACGACACGGACACCAATGGAGAGAACTGATGCGGAGCCTCGCCAATGGCGGCAGCGAACGTCTTCGTCGGCTGCGAATCACGGCGGTGGGACTCTGCGACAGACTTCAATCCATCGGCGACGAACTCTCGGTTTATGCAACTAATTTGGGTATCAATTTTGAATTCTCAGTGGTGAAAAAGAATTTGGAAAGTTTGAAACCGGAGGACATAGAAGTGAGGGAAGAAGAAGTTCTTGCGGTGAACAGCATTCTGCAGCTGCACTGCGTGGTGAAGGAAAGCCGAGGGGCTTTGAATTCAGTGCTGCAGATGGTTCATGGGCTTGGGCCGAAAGTGTTGGTGATGGTGGAGCAGGATTCGAGTCATAACGGACCCTTTTTTCTCGGGAGATTTATGGAATCATTGCACTATTATTCTGCCATATTCGACTCGTTGGATGTCATGTTGCCCAAATATGACACTAAGAGAGCGAAGATGGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATAGTGAGCCGTGAGGGGCCGTTGAGGATGGAGAGACACGAGAGAGTGGATCAGTGGCGGAGGAGGATGAGCAGGGCGGGGTTTCAGGCTGCGCCGATTAAGATGGTGTCTCAGGCGAAGCAATGGCTTCTGAATGGGAAGGTCTGTGAGGGGTACACGGTGGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCCAAGCCTATTGTGGCGGTTTCTTGCTGGAAATGCTGA


Promoter Sequence:
>Vu_06546::LG1:96331279-96333279(+)
TTTTCCTTCATATAATGTATTTCTCGCATTCAACGTACAACTGTCAAAATGGTAATCTGACTCGATCTTGCCCGACTTACCACGGGTTGGTCATTTAGTGAGCCAACCCAACCCGACTCACTTATTAGCGAACGGAAAAAATTTAAAGTCGGTCCGACCCACTGCAGGTTGGTGGATTAAACGGGTTGATTCACTCACTCATTTAATTATAAGTTTTCTTTTAATAAAAAATTACAATATTTTTTTAATTCAAATCTAAATATTTTTTTAATAAAAAAAGTATTACACAATCCAAACATAATCCAAAAACATGTACAAAAAGCAAACAAATAAGTTTTCAATATTGATAATATTAGAGTCTTGAATAGATAAATCTATAATATTTTTCTCTTTTGAAACATCTTCTTTCTATCACCATTTACAATATAATAAAAAAATGCTAACTAATAATATTGAAACACAAAAATAATAAATAATTAAATTAAATTAGATGGCTTGGTGAACCAACCCGACTCACTACAGGTTCAATCCGGTGAGTCGAGTTCTAAGTAAGTCACGTTGAAAACTCGTCCATATAAAAAAATTATATTTTTTTCAAACCCAATCCAACTCAAACTCGTAGTGAGCTGAAGGGTTACAACCCATTTTAGTAACACTAATTCAACCATTTACCACTTTTTCTGTTTTCCTCTTTAACTCCATTGCCACTACCCTTCTTTAATTCTCATCTGGGCCTCTTCGCAAGTGCATTCATCTTCTTTCTTCTGTCAAACAACTCTTTCAAAATAATCGGTTAAACTTGACAAGTTATTAATGAAATTAAATAATTAAAGTTAATAATAATTATTAATGAAGGTTTGAATCGCTGTCATTTTCTCACCAAATCCATTAAATGTTTTTAAAAAATTAAAATTTATTTGTAATGTTTTATATTTAAAGACTAGATTGATCAATAATATATAATTTGAGAAACGATGACTTTGCTAAATTTAAAAATCAATTTGATAAATAATTAGAGAGTAAATTAGAGATTTAGTCTGTAAAATAATGGTAAAACTAGTAGTTAGCATAAGTGATATAGTGAAAAAAATTGCACTAAAATGTGAGTGTAATAGTAGTGTAAGAAGCTCAAATTATATATAGTTTAAATTGAAAAGTATGTGCAATAAATCCACATCAATTTCTTCTTTTGTATTTGCTGTATTTTTACTACTGAAATAATATTTATCGTTCCTCTTCCTTTGAGGTAGAAGTGGATACATATTAAGTTTTCATTCGCAAAAAATCATATTTAAAGTACTTCACCAATGCTTTTCCATAGCAACTTAAGCAAAAATATGCTTCTGCTTTATGTTTCAACACAATTCATATTATTTGTCAGTCACCCTTTTGTTAGAGGAAACTCCTGACAACTTTTTTCTGCCATGTTTGAATCAGGATTCATTCAAAGGATTCAACGAGTTTGAAAATCAAACCTTTCTGTAAGCAGAGCCATCCCATCTATGAAGAATGGTGTTTTGTATGACGCAGATTGAGAAAATCGATAACCCTGAAGTTCTGAACCGGTGGAAGTTGAGAATAACTTGGACACCCGCACATAGAAAACTTTGTTTCAATTCACACTACAGTAAATATACAATCATAAAAAAAAAATATTGTTAATACTATGTTACCCGTGTACATATCACAGTGTTATGCCTAAATGGGACAACATAGAAAGCGACGAAATGGATAATGCAATTTAATTAGGGAATAGAGAATGGTGTGGCGACCAATCACGAAATTCCCAAAGGCTTGGAGAAACGATGTTTCCGAGAAATCTAATTGATATACGCTTTCTCTGCTGATCAGTTTCAATGTAGTATCTAATGAAGAGAACATAGAAGTTCACGTCTACTAGGAACTAACGTACGAGTGTGTAGTATATATAGCCATGAGTTGAATGGAGGTTCTCTCAGTGCGTTATTGAATATCTTTAGAAAAGAAAAAGGTTGCATAAA


Gene Sequence:
>Vu_06546(+)
ATGGCCCCTCCTCAGTTTGGTGCCTTGAACGGAGAAATCGATGGTGAAAATCTATCGTACGTGTTTGATATATGGGCAACCGATCAATATAGCTGTTTTCCTCTTCAACCTATTTCGGAGAGTAACAGTTGTACCTTAGTTCTCCCCTATTGTGACGGAAGCATAAGGGATAACAAAAGGGTGAAGAGAACGGTGGGAATCCCCGTTGACTGGTTAGGGAATTTGATGAGCAATTCCCACAGTTTCCTCAACACCAACGCCAACAACTGCAATAGGAGTAGGGATAGCATACCAAAGCTTCATTTCAGAGATCACATACGGACTTACACACAAAGATATCTGGCAGCGGAAGCAGAAGAAGAGGCACCAGACGACATAAATAGTTCAGAAAGTGATGGAGCTGAAGAAGACGGTTGTCATGACGGTGTGAGGCTGGTTCAACTTCTAATAGCATGTGCAGAAGCAGTGGCTTGTCGAGACAAATCGCACGCTTCAATATTACTATCAGAACTCAAAGCCAACGCTTTAGTATTCGGATCTTCGTTCCAAAGAGTTGCCTCTTGTTTTGTTCAAGGCCTAATTGAGAGGCTGAATCTGATTCAGCCCACCGGGCCAGTGAGCCCGATGCCACCTATGATGAACATTATGGACACAGCCTCCGAAGAAATGGAGGAAGCATTCAGATTGGTTTACGAGCTGTGTCCACACATCCAGTTCGGACACTTTGTCACTAATTCTATAGTGATGGAAGCCTTTTCGGGTGAGAGTTTTGTCCATGTAGTGGATTTCGGGATGACTCTCGGTTTACGACACGGACACCAATGGAGAGAACTGATGCGGAGCCTCGCCAATGGCGGCAGCGAACGTCTTCGTCGGCTGCGAATCACGGCGGTGGGACTCTGCGACAGACTTCAATCCATCGGCGACGAACTCTCGGTTTATGCAACTAATTTGGGTATCAATTTTGAATTCTCAGTGGTGAAAAAGAATTTGGAAAGTTTGAAACCGGAGGACATAGAAGTGAGGGAAGAAGAAGTTCTTGCGGTGAACAGCATTCTGCAGCTGCACTGCGTGGTGAAGGAAAGCCGAGGGGCTTTGAATTCAGTGCTGCAGATGGTTCATGGGCTTGGGCCGAAAGTGTTGGTGATGGTGGAGCAGGATTCGAGTCATAACGGACCCTTTTTTCTCGGGAGATTTATGGAATCATTGCACTATTATTCTGCCATATTCGACTCGTTGGATGTCATGTTGCCCAAATATGACACTAAGAGAGCGAAGATGGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATAGTGAGCCGTGAGGGGCCGTTGAGGATGGAGAGACACGAGAGAGTGGATCAGTGGCGGAGGAGGATGAGCAGGGCGGGGTTTCAGGCTGCGCCGATTAAGATGGTGTCTCAGGCGAAGCAATGGCTTCTGAATGGGAAGGTCTGTGAGGGGTACACGGTGGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCCAAGCCTATTGTGGCGGTTTCTTGCTGGAAATGCTGA