Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06684 LG1 97794016 97797470 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of DNA endoreduplication, DNA endoreduplication, regulation of transcription by RNA polymerase II, negative regulation of DNA endoreduplication, negative regulation of DNA endoreduplication, DNA endoreduplication, regulation of transcription by RNA polymerase II, negative regulation of DNA endoreduplication, regulation of transcription by RNA polymerase II, DNA endoreduplication, regulation of transcription by RNA polymerase II, DNA endoreduplication
Cellular Component   is active in   RNA polymerase II transcription regulator complex
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 97794260 downstream_gene_variant
G/T 97794667 downstream_gene_variant
C/T 97794730 downstream_gene_variant
G/A 97794788 downstream_gene_variant
C/G 97794797 downstream_gene_variant
G/T 97794847 downstream_gene_variant
G/C 97794994 downstream_gene_variant
T/C 97795172 missense_variant p.His342Arg
T/G 97795221 missense_variant p.Asn326His
T/C 97795528 synonymous_variant p.Pro223Pro
G/C 97795602 downstream_gene_variant
T/C 97795641 downstream_gene_variant
T/G 97795756 missense_variant p.Ser203Arg
A/T 97795792 intron_variant
G/A 97795829 intron_variant
A/T 97795914 intron_variant
G/T 97795915 intron_variant
C/A 97795918 intron_variant
C/A 97795919 intron_variant
G/A 97795935 intron_variant
A/G 97796035 splice_donor_variant&intron_variant
C/T,* 97796146 intron_variant
G/C 97796176 intron_variant
G/C 97796181 intron_variant
A/G 97796318 intron_variant
G/C 97796487 intron_variant
G/A 97796580 intron_variant
C/T 97796583 intron_variant
C/A 97796670 missense_variant p.Asp134Tyr
A/G 97796735 splice_region_variant&intron_variant
G/A 97796785 intron_variant
G/A 97796908 intron_variant
T/C 97797175 missense_variant p.Arg51Gly
G/A 97797227 intron_variant
C/T 97797274 synonymous_variant p.Leu40Leu
T/C 97797340 intron_variant
A/T 97797374 intron_variant
A/T 97797380 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06684.1
MTSSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRENSSSLRGSTNDDMYKVSDDEDDEETQSNAATGSQNDKLNPKSIQPRSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNESRKRAFGSDITNISFERNKVELFTNGDLNSNPKKLKIENDRGLDQADENNLKQGTKQTSKSYQFGPFAPACVPGVGASGNNNVKQVHDWDGLVTTHSPQYQNEALRDLFSHYMEAWKSWYSEIAAKRPLKIL*


CDS Sequence:
>Vu_06684.1
ATGACTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCTTAGGACTTTTGTGTACCAATTTCTTGAGTCTCTATAACCGAGACACAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGTTTAGGAGTAGAGAGAAGACGGATCTATGACATTGTTAATGTTCTCGAAAGCATTGGGGTTCTCTCGAGGAAAGCAAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTTACCCTTCGGGAGCTAAAAGAGGATGGGCTGAGGGAGAACTCCAGTTCCTTGCGCGGGTCCACCAACGACGACATGTATAAAGTTTCTGACGACGAAGATGACGAAGAAACACAGTCCAATGCCGCAACTGGAAGTCAAAACGACAAGTTGAACCCTAAATCTATTCAACCCAGATCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTCGTGTGCTCTAATGTTGAGTTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGACGCTCACAACACCTCAATAATGAGAACAAAAGTTAGACGCCTATATGACATAGCAAATGTGCTATCCTCTATGAACCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCAGCGTTCAGGTGGTTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGAGTCTAGGAAAAGGGCGTTTGGGAGTGATATTACAAACATCAGCTTTGAGAGGAATAAGGTGGAACTATTCACAAATGGAGACTTGAATTCTAATCCCAAGAAGCTAAAAATTGAAAATGATAGAGGGCTGGATCAGGCAGATGAAAACAATTTAAAACAAGGTACAAAACAAACTTCGAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCGTGCGTGCCCGGAGTTGGAGCCTCTGGGAATAATAATGTAAAGCAGGTGCATGACTGGGACGGTCTAGTAACTACACATAGCCCTCAGTATCAAAACGAAGCTTTGAGAGATCTCTTTTCCCATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCAAAAAGACCATTAAAAATTTTGTAA


Promoter Sequence:
>Vu_06684::LG1:97797470-97799470(-)
TATCATACTTATCAACCACCTTCTAACTCATCATCCACTAGTAAATGTTCTAACCTAGGTTCACCATCAACCTTAATAGGTAATTATCACATTTATCAGACTCTGTTGTTTCTTTGACAAATTATAGTTTCCATTATCATTACTTACAAAGTCTCCATTATGGTGGACCACCACTTTAAAATGTTTCTCAAACATTTTATACTATATATTTATGGATCTGTAAATTATATCCACAAAATAATAAATAAATTACAGTCCTTACCATTGAAATATGAAAACGAGGGACACATTGCTATCCCTGTTGCCGAAACATCCAAATGGAGGACCATAACTACAAATTTCAAAATGAAATAGGAGACCACAATGAACAATACATTACAAATAACAATTGCTACCTCCAACAATAAAACATTTCTATCCCAAAACGAAAACACAAAATTTAATAACCACAATAAATAAAAAATAAGTAAAATAACCGGTAACTACCCATAAAATCAAATTCACCTCCATTATTCACCATCAAATGCTCAATTTTTGCTCAAAATCTTCTTTCCTATTCCTTCCATCAATGTTGACACTCTATTCAAATCTCTAATTCAACCTCTCTTTCAAATCCATAATTCTGCTACCAACGCATTGTCAAAAAGTAAAAATTAAATTCTTCATCACCATGTTTATCATGCACCGCCATTATCAATTTAAACAACATTAACAATAACGGGAGCCTTGTACACATTTTTTAAAAATATCTCAAATTCTAAAAACCTAATTAAAATTTTCAAACAAAAACTTGTTCATACAACATTTATTTATTAAAGTAAATTATAATTTAAAATATTTGGAAGTAATTTAAAGAATTTAGACATAATAGTACTTCAATTAAAGATGAAATAAAGTATAGAGTGCTAATTTACTTATAATTCACAATACAATAGATCCTTTTTAAAATACACAAATAATTTATTCATTAAATATAAATACATTATAGTTGAATATAATTATTTGGTACAACAGAATAATTTAGGTTCATGGATCAATGTGTGAGTTATTTTTTTATTCCATAACATATGTACTCAATTCCTATATATAAAATATAAAATTTTTATAAATGACAGAGTTAATAAAAAGAAATTGGATTAAACTGAATCCCATTGAGAACTGAATTAATTTTTAAAAAACTTCTCTTATAGTTTAATTTCAAAAATATGAATTGTTCTAAAATAAATGTGTTTAAACTAAATTGAATAATAACTTCTTGAACTAATAGATATACTTTAAAATAAGATCTTCATAATTTTATTTTTCTATTTTTATTATTTTAATAATTACTTTTGAAACTAAAATAATTATATTTGTAATTTCACTGTAAATCGAAAATTTAACATTTTTTAAAATTAAAATAATTATCTATACAGATTTCTTTAATTTTGTTGTTTGAGTATTTTTTTAGACTAAAATGATTATCTTATCAATTTTACCTTTTAAATAACTATTTTTTCTAAATTAAAACAATGATTTATAATAAAAAATACATAAATCTATTATAGAAATTATTTATATTTAATTTCATAAATATAGTAATAATAAATTTTTTATTTTATTGTATAAAAAATAAATGTACAATAATTTGCAATAAAAATCATATATAGTAAATTATAAATTTGATTCTTGTAACAATAATAATAACAGATATTTGATTATTATTTTTATTATTCATATATTTTTAATAATAAAAAAAGAAAAAAAAGATAGAGTTAAGTAAGATTGTTGGGAAAGGACGTGGTTGGGGACAATCAATTGCAGATTGCAGTTGTTGAAGAAGAAATTCCCGCTTAATTGTTTGTTTTTGTTTAAAAAACAAAACAACATCCCTCCCACTCCCTCTTCAGATCCATTTTCAAAATTTTTGCCCCGCCAACAGACACCCTTCTTTTCCTCTCTCTCTCTCCCTCTTATTTAACGCTCTCATCTCCCTCTTCCTTCTTTTCTGCAACACTTCA


Gene Sequence:
>Vu_06684(-)
ATGACTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCTTAGGACTTTTGTGTACCAAGTACTTCTTCTTTTCTTTCTCTTCCATTCCTTCCATTCAATTCAATGGCTAATTTTTGTTTTTTTTTTTCTGTCAGTTTCTTGAGTCTCTATAACCGAGACACAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGTTTAGGTATTTAATCATCTATTATCTTCCTATCTTTCTTCTCTTTTTGAATCTAATTCTTGATTCTCTGCAGGAGTAGAGAGAAGACGGATCTATGACATTGTTAATGTTCTCGAAAGCATTGGGGTCTGTATATTTTTCCCTATTTTCTCATGTTGCACTTTTTTTTTCACTGTTTCATCTCATGTTATTCATTCCGATCCGTGCATGTTTTAGGTTCTCTCGAGGAAAGCAAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTTACCCTTCGGGAGCTAAAAGTAATTATAATCTCTGTCAGCTTGTGATTTTCAAGTTTAATATTTAGGTGCTAATTGTTAGCTCACCATGGTTTCATAGGAGGATGGGCTGAGGGAGAACTCCAGTTCCTTGCGCGGGTCCACCAACGACGACATGTATAAAGTGAGTTTTTCCCAAAAACCTCATCTCGTTTCCTTTTTTTTAGTTAAATATATCTTTTTTTTTAGATTAATGACTGTGTCTTGTAGGTTTCTGACGACGAAGATGACGAAGAAACACAGTCCAATGCCGCAACTGGAAGTCAAAACGACAAGTTGAACCCTAAATCTATTCAACCCAGATCACTAAAAAATGGTAATTAGATCAAAACTAAACTTTTGTTTTTGGACGTGGAAGTGCCTTGCTGTATACCCTCAAACTAGTGATAACATATATCCTCAAACTCTGATTAAGGTTATGTGTGTTTGCTTCTTCTTCTTATTTTCTAAGTACGATCATTATTATTTTTTATTAATTTTATATATTTTTTAAAATACAACATTATTTTTAACTTTTTTTTTTTTCTTTTGCTTTGTGGATCAGTTTAGAGATTTAAGAGGTTGTTGCCTCTATTATTGTTGTGAATTTTCATAAGTACCGGAAAGCAAAACTTTTTGATTTTTTGCACAATGTTTGATGCTTCCACACTGTTTTTGCAGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTCGTGTGCTCTAATGTGAGGGTTGCCACGAGTTTTTTGGACGTCCCATTTCATATATATTTGTCTTAGCTGTGTAGCGTGGTAGGTCAAGATTGACAATTTTGACCCTACTTTACAGGTTGAGTTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGACGCTCACAACACCTCAATAATGAGAAGTAAGAGTATGTTTTATTCTTTGAAAAATATAATATCATGAAGCAACCCATGGTAAATAAGGATTGCATAAGTGCTACTCACTTTTTTGTTATAGCATAAACCATTGGCTCTTTTTTGGTTCTCCTCCTTATACTGTATTTTAATGTGTATTAAGCACATTGTTAAGCCATGATTACTGTTAGTTGTCCTTTATTCCTTGGCTAAGACAAAAATTTCCAGCATTTTTTCACTTACACTCTGATTTGGCCTTGCAGCAAAAGTTAGACGCCTATATGACATAGCAAATGTGCTATCCTCTATGAACCTTATTGAGAAGGTGATACTCGCCATTCTTTCATTTCTAATTAATTTGTTGCTGAGTGTCTTAAAATATGATAGAGAGAGAGGTTCACATATCCTCGTATGTGTTAATTTGTTTAACGTAATTGCATAACTAATCATATTCTAGTCCTCAGCTTACGATGATTTTACAAATTGACAGACCCATACGTCAGATACAAGAAAACCAGCGTTCAGGTGGTTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGAGTCTAGGAAAAGGGCGTTTGGGAGTGATATTACAAACATCAGCTTTGAGAGGAATAAGGTGGAACTATTCACAAATGGAGACTTGAATTCTAATCCCAAGAAGCTAAAAATTGAAAATGATAGAGGGCTGGATCAGGCAGATGAAAACAATTTAAAACAAGGTACAAAACAAACTTCGAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCGTGCGTGCCCGGAGTTGGAGCCTCTGGGAATAATAATGTAAAGCAGGTGCATGACTGGGACGGTCTAGTAACTACACATAGCCCTCAGTATCAAAACGAAGGTAATCAATATTTCATATTTCCCCCAACATAAAACGTTGTTTAAATATTATTGTTTGGATTTACGTTGAATTATTGAAAATTGCGTTGAAGTACTATTTAATGTGATTTTAAGTAAATGTTTACTTTTTTTCAATATGTTTTGTTTAATATTGGCTTGGACTTAAAAAGTCTTATTTTAAATGAATTTGATTAATTTGATTTGGTTCGTATGAAGTCGAGCTTAAAAAAAATCGGTTCAAAAGTATCGAGTTTATTTGATTTGATATTGTTATTTGTTATAGAAGTTTTATAAATATAAATCAAAAAAAGAGGCTATTTTGGTTTGAGTTGATAGAACAATGGATTAGAGAGCGAAAATACAGTCTGGAAAAAAATTGGTATAGATTGGACAAGTACACTTTCTATCTTCAATCTATTGGATAGGTGAACTGTTCTATTTGACATTTATTGGTATTTTTTTTTATATATTTATTGTTTCGTCATTCATTCTTTAGCTCATCTTTCACCTGCACACTGTTCACTACTCCCTTACGGGGAGAATCCTTTTACTCGTATATGCAACTCAAGATTCTCATCGGCACATCAGTTATAAACTCAATTTCGTGTCCCATCAAGACAAACATGTTCTCCATCATCAGAACATGTCTCTAAAAATCACCATCCAGCCAATAGTGCGGCCAATATCGTTACAATTGCTAGCATATCCCTTTCCATCTGTTGATGCAACGCAAGATCCTCATTCAAACCATCAACGCACCTCCTTCCTGTGGTTTTCAAAGCTCTATAAAATTGTTATTCGCATGCTGAGAGGAAGGCAGAGTTGTGTGCATATTTTTACAGCCATTCTTTAATGATAGAAAACGCTATTTCCTCCAATCTGTTGTCTTCTGTGTAAAAGTTGGCTGTAAACTTACAACCCTGTAACCATTCGTGTTGCAGATGTTCCAAGTCTCATTTAACTCACTTCTATAGTCCAGTAGCTTGATTATTGACATGTTGATTGAAAGCCAACTAATTTGATGTCCGTTTTTCTTTTGATTCAGCTTTGAGAGATCTCTTTTCCCATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCAAAAAGACCATTAAAAATTTTGTAA