Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06706 LG1 98050026 98050320 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to abscisic acid, regulation of transcription, DNA-templated, defense response to fungus, negative regulation of abscisic acid-activated signaling pathway, root regeneration, negative regulation of abscisic acid-activated signaling pathway, response to abscisic acid, response to abscisic acid, response to glucose, response to osmotic stress, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, response to salt, response to osmotic stress, defense response to fungus, response to abscisic acid, root regeneration, defense response to fungus, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/G 98050037 missense_variant p.Ser60Thr
G/A 98050100 missense_variant p.Ser39Leu
T/C 98050104 missense_variant p.Thr38Ala
G/A 98050105 synonymous_variant p.Ala37Ala
T/C 98050111 synonymous_variant p.Gly35Gly
C/T 98050121 missense_variant p.Gly32Asp
C/T 98050122 missense_variant p.Gly32Ser
A/G 98050126 synonymous_variant p.Ser30Ser
A/G 98050159 intron_variant
G/T 98050173 intron_variant
C/A 98050241 splice_region_variant&intron_variant
G/T 98050252 missense_variant p.Phe23Leu
C/T 98050287 missense_variant p.Ala12Thr
A/T 98050317 missense_variant p.Trp2Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06706.1
MWLGTFDTAEAAARAYDEATLRFRAVTGYSLTVMQEAPLQRLLGLFSASTEHKGVPWTRSVVL*


CDS Sequence:
>Vu_06706.1
ATGTGGCTTGGCACCTTCGACACCGCCGAGGCTGCTGCCAGAGCCTACGATGAGGCCACATTGAGGTTCAGAGCGGTGACTGGTTATTCTCTGACGGTGATGCAGGAGGCGCCACTTCAGAGACTATTGGGGTTATTCTCAGCTTCTACGGAGCACAAGGGAGTTCCATGGACTCGATCAGTGGTTCTATGA


Promoter Sequence:
>Vu_06706::LG1:98050320-98052320(-)
TATAATATAATTCCTCGCAAATATGAAAGTTTCTTTAAACAAACCTTTAAATGGTAATGTAAATATTATATACATTATTTAGTTTATCTCCTGTAATTATTAGTAAAATGTCATATAAATGACATGAAAAACTCGGTATCATTTTCATATTTTAGAAAATACGTTTTCTTTACATATTTATTCACTTGACATTGAAAACAAAAATATCTAAAAATAAATAAATCCAATGATTGAGAAGGCGTGCCTTAACTCTCTTAAACATTTACTATTCAAACTCAAAGTATAATGATAGTCAAAAGAAAGGTAATAGTTTAGTGAATTAGATTCATTTCATAAAGAATATTAGTAAAAGAAGTGATATTAGCTCATTCAAATTATACACACACATATATATAAAAGCAAAATTATATCAAATGAAAAATGTAAAATGTTTTTGAAAGTTAAAATAATTATGTTTTTGAAGTGTTTATGAATTTTTTAATTGGGTCACTCTACATCAAGTAAATATAACGTTATCCTTTTTGTAAATTGAATTATAAAGGTTTTAAAATCGTCACAGATTATTATTTTATAACATTCAAGTTACTATGAACTAATTTCAGTGATTTAATAACAAAAAAAATACAATCTTAATATTTATCATTTTTTTTAGTTTAAAGACCTGGTTACAAAATTTAAGTAGTTCAAATCCTAAAAATTGATTTAACCAAATTTAAATTATATTTATTTATAAAAATGGAAATGAAAAATTAGCATATTTACAATAACTTAAACACTCTAATTAACCGTAGTTAAGTTAGTGGTTAGATCTTGATAATGTTATGAAAAAATAGCTGGAATTTACAATAAAAAAACTCTAATTAACCGTAGTTAAGTTAGTGGTTAGATCTTGATAATTTTTTTATTAAGTTAAACACCGAAAACTTACTTATAATTTACACATTATTTGTACACAGAGTTTAATATTTGGTAACAATTTTTTATTACATTATTATTGTTTTTTTATTCAAGGATTTTGTACGTGTCTGCATTAGCATTATACACGTCCTTGTCTGTTCGGTTAATGGATGGACGTTTAATATGCTTAGCCTTGGTGGGTGAATCATTCATGTGTCAAGGCATGTTTCATGTATTAATTTTCTCTTACGCAATAATAGCATAAGTAAAATACAATGTATAATCATAAAGTCGTAAATATTATATATTTTTTTATAAATACACGAATATATAAGGATTTTCATAGTTTTAAACTTAGCAATTATATATATAGTTTTTTTATTTCATTAAAAAATACTTGTAATTATTTATATTATTTTATTTTTTATAAATACCAATCGTTTTAGTAATATAAAAATTATATATATATATATATATATATATATATATATCCTGCTTGATGCATAAAATTATATTATAATAACATTTCTCCTAAATAGGTTTAATACTTTCTTTGATTCCTACTTTCATTTGACAATCTCAATTCAGTCTCCATTTTTAAAAGTGTTTAGAATATGTCCACAATTAGTAAAATTTGAGTCTAATTTGTCCCTTCCGTTAAGTATAACCAAACGGAGTTAGTGTGTTAATGATGTAGCACGAGTTATTGACAACATGTCAATATATTGTTTTGTGCATGCTGACGTGTAACTGACTTATAAAAGATACAATGTTTTATTAAGATAGGGTTTTTTTAATTTGGGAAAAAATTTATTTAGGGCAGAACCAATTAGGGTCTTCTTCTCCTTTCGGTTGCAAGGGGTACTGTAGTTCGGTTCCGACTCATTGGTGTCACCCTCTTTTGGGCTCGGGCTCGGGCTCGGTTGGGCAGAAAAGAGCCCGTGAAAATGATAGTGTTGCTGCCGTGAGTGGGGCTGAGGGTGGTTCGTCACAGAGTGCGTCACAGGAAGAAATCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGACAGAAGCGTGGGGGAAATAGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCAAG


Gene Sequence:
>Vu_06706(-)
ATGTGGCTTGGCACCTTCGACACCGCCGAGGCTGCTGCCAGAGCCTACGATGAGGCCACATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACGTTACCGCAGTTCGACCTCCTCCTTCCCGATTTTTCGGCAACCTCACTCTCGGGCTTCGGTGATGTTCCAGCGGTGACTGGTTATTCTCTGACGGTGATGCAGGAGGCGCCACTTCAGAGACTATTGGGGTTATTCTCAGCTTCTACGGAGCACAAGGGAGTTCCATGGACTCGATCAGTGGTTCTATGA