Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06763 LG1 98596382 98600254 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   pollen maturation, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, positive regulation of transcription by RNA polymerase II, regulation of pollen tube growth, pollen development, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, cis-regulatory region sequence-specific DNA binding, protein binding, cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
G/T 98596499 missense_variant p.Asp40Tyr
G/T 98596847 upstream_gene_variant
G/A 98597052 upstream_gene_variant
A/G 98597104 upstream_gene_variant
T/G 98597204 upstream_gene_variant
A/G 98597206 upstream_gene_variant
G/A 98597525 upstream_gene_variant
A/G 98597602 upstream_gene_variant
A/T 98597791 missense_variant&splice_region_variant p.Arg62Ser
A/G 98597792 missense_variant&splice_region_variant p.Ile63Val
T/A 98597992 upstream_gene_variant
T/A 98598102 missense_variant p.Phe93Ile
A/G 98598149 splice_region_variant&synonymous_variant p.Ser108Ser
G/A 98598152 splice_donor_variant&intron_variant
C/T 98598582 upstream_gene_variant
G/C 98598659 upstream_gene_variant
A/T 98598948 upstream_gene_variant
A/G 98599325 upstream_gene_variant
T/C 98599330 upstream_gene_variant
A/G 98599344 upstream_gene_variant
C/G 98599356 upstream_gene_variant
G/A 98599358 upstream_gene_variant
C/T 98599359 upstream_gene_variant
T/A 98599374 upstream_gene_variant
G/A 98599396 upstream_gene_variant
C/T 98599405 upstream_gene_variant
C/T 98599424 upstream_gene_variant
G/T,C 98599461 upstream_gene_variant
T/C 98599462 upstream_gene_variant
G/T 98599465 upstream_gene_variant
C/T 98599479 upstream_gene_variant
G/T 98599833 upstream_gene_variant
G/A 98600071 missense_variant p.Ser206Asn
T/A 98600173 missense_variant p.Ile240Asn
T/C 98600197 missense_variant p.Leu248Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06763.1
MGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELSHQVRVLQAQLTEVHQRLSDNTNREVECSTDISLPSYSNYIGSNKLEVGSSPQVTLGQGGGAMNELNGTTYLNVQRCDQFTFPPQDIEEAKHLPTLNNKSNTVDYQVNNFDLSGSLFENGHQFWNSASGSCGIAMYNENGYHRVSNPFMFQ*


CDS Sequence:
>Vu_06763.1
ATGGGAAGGGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTGTGCGACATAGACATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAGGTTGTTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCTTTAAAGAAAACCTTCAAGAAATTGGATCATGACGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACAGTGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAGCTCACAGAAGTACATCAGAGACTGAGTGATAATACTAATAGAGAAGTTGAGTGTTCCACTGACATTTCACTTCCAAGCTATTCAAATTATATTGGGAGCAACAAACTTGAAGTTGGTAGCTCTCCCCAAGTGACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGCTAAATGGAACTACATATTTAAATGTACAACGTTGTGACCAATTTACGTTCCCTCCACAAGATATTGAGGAAGCAAAGCATTTACCTACATTGAACAATAAATCAAACACCGTGGATTACCAAGTTAACAACTTTGATCTTTCCGGTTCACTATTTGAAAATGGACATCAATTTTGGAATTCTGCTTCGGGGTCTTGTGGTATTGCCATGTATAATGAGAACGGCTACCACAGGGTAAGCAATCCTTTTATGTTTCAATGA


Promoter Sequence:
>Vu_06763::LG1:98594382-98596382(+)
CGAAAAAGGACAACCCGTAACGGTAATTTCCATTGAAGTTGCTTTTCCTTAATCTACGTGGGAATATGCAATACACAAATTATGCAGAGCATATAGAAGTGCAGAGTAGGGTCTTCTCCTAAGACAATTTGGTACAATACCACGTAGGCATACGGCAACTCAAAGAAATCTAATTATTGAGACAAAAGAAAAACAATAGAAATTGAGTTAAGAAATGAAAATAAAGGGTAAGACCTTAGAGTAAGGGACAATGTGGTCGTAGTCATGACAGAGACAACCGGGGCAACCTACGAGCTTGCGAAAGACAGTATTGCCGAGGGCGTCCCTGCGCCAGCGGTCGGGGTCTCGTCCTTTGACCTTGTCTGCCTTTTCCCAGCATTTCTGCTTAACGCTGTGAGGGAAGCTCCGAGGGTTAGGGTTAGGATAATCGAGAGAGAGAGAGAATACGTCATGGTCAACGTCGAGGAGAGTGGCAGAGGGTGATGTGCTTCGTTTGGACGGAGAAGATAATTTAGACGAAGAGGTTTTGGATCTGTCCTTCAGTGGTGACGAAGACCTCGCCCTCCTTCTTCTTTCTTCTCTGCTACTCGACTCAGTAGCAATACTACCCTTCATTCTCTTGGCCCCTTTTTCTTCCTTATCCAATTTCACATTTTATAATTTAGGATTCTCTTAAAATTCATATACATAACTCTTTTTAGGAGCACATTTACATAACTTATAAATATACTTTTATCATTAAAAAATAAGCAATTAAGTGTTTTTTTTACTTTTTTAAAAATAAATCATTTGTCTTTTGTAGAAAATAAGTTTATACAAACAAAAAACCTTACATACTACTTAAAAAAAACTATGACACTTTTTTTGCATTAACATTTTATTGCCTAATTTTATTTGAGTTGTAATTAAAAATTATATATATATATATATATATATATATATATATATATATATAAATTTATATTTTAAAGATTATTTTTAAATAAATTTGTTTTTTTAAAAAAATAAATATAAAAGTAGTTACAGGTGTTTAACAAATTTCATAAATTATACTTTTACTTTTATTTTAAAAAAAAATTAATGAATACATAAAGTTATAAATTAGAAATTATTTGTATGATTTTATTCATAGAGAAAAAAAAGAAAAAAAAGAAAAAAAATATTTTTTTATTTGATAAAAATAATAAATGTGTTACAATAATGAGTATATGTCCGAGTAGACCTTTTCAAAAACATAAAAGAGACATAAAAACTAAGGAAATGGGTAAAAAAAAAAGATAAACAGAAAGAAACATGTGAGTTTGTTTTAAAACGTGGTATATGTGCATGAGGAGGAAGAGAGAGGAAAATGTGTTGGTTTTGTTGGTAGAGGAGGTGTTTGTTGCATGGTGCCAACGATTGGGGTCTCCCAAATCTCACCCTTCATATTCATGTTACGAGCTTGGTTGGTTCCCCAAACTCTACCCACCGAAATCACAGCTATACCTTTCATCTTTCAACAATTTGTTAGCTCCTAGATTTCATATCCAGCTTTCCTTCTTTCTCTCTACTCGCCATCTCCCATAAACAAATGCTGCTCTGATTCTTTAGTTACCTCACACCTTCACCACTTTTTTTTAACATTTCCATTCACTTCTCTCGATTCTTTTCCTACACGCTCTCTTCACTCTCTCAATAAGGTTCTTTTTTTTAACTCTATCACAATTTGGATTTCCTTCAAATATAGCATTGCCCCTTTCTCTTCAACTTCAATTCTTTCTCTTCATATTTGGCTTAAGTTTTTGTTTGTTTGTTGCATCCTTCAACCTCCTCGCTTTTTTAATGGCTTGGAAACTTTTTTTACCAGATGGGGAATTTAAGATCAATTACTATGTTACATCGAATCATTTATTGTCAAAATTTGGTTAAATTAATTATTTGTTTTCGGTTGTTTGTGGCAATATTGGGGGCGAGGGTATATAAGGCTAAATGTGTTCACTCTTAATCCTAAATTTGCAGGA


Gene Sequence:
>Vu_06763(+)
ATGGGAAGGGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTGTGCGACATAGACATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGGTAATAATAATGAAAAAATATTTAAGTTGCGTTGGGAATGACTGAATGATACTGTTTTGTGAGTGAGTTGAACATGTATGTCTGAATAGAACAACTAACCAAGAACCTTGATATGATATTTATGCCTTTCTATGAGGAAACAACCCTGCTTGCTGTAACAAACATTGTATGACATATGACACCCAATGGTTTTTTTGTATTTTGAAAGTATTTGTATGGTAAACTTTTATTGTTTCATTAAAACACACTATCTGTTGTAGGTGCAAATAATCTTCTAGGAGGATAATGAGATATTGTTAGTTTTATAGAGAATGCAATTTAATACTGTATATTATTTTATTGGGTGGATCTGTAATAAGAGATTACTCTCGCATTTGAAATTTGAAATCATTAAGTATATATTCTTTGGACTGTAATTGTTTATTGGATAAAAGAACTGGATTCCAAATTTTCTCGGTGTGACTAGAATTCTTTCCATTTGCTCCGGAGGTCTTGTTAAATTGAAAGCTGTAAATCAAAACATGAGTGTGTAAATTTATAAGTTTTTTTTTATAGTTTTGTAACATTTATTTATAAGCATAATATTATATACTTCAAACTATTAAATTGGTTGGTTTCGTGGTAACATAGAAAGAAATGATTCTAATCTATTTGCAAGTGTTTCAAGTATAACTAGTTCCTAGTCAATCCTTAACTTAAAACAGTACATTAAAATGTATATGCAATAATTGAACAGTTGAAAAGAAAAATAGCAATTCAACAACTCCAACACTATAATAATAACAACAAAAGTCTAATTATACTATGATTTGTGTTCAACATATTTGATGAGTATTATGTTGGTTTTCAAGTGTCCTAGAACCCTTTTCCTCTGACCAGACTGCATCCAGCTACTCAAGTATTATATATGAGATATATTTTTGTATGTAATACAGTTTAATATTCTAAATGGTATAAAGAGACAGAACGATAGTATTGTTAACTAGCTAGTCCTTGTTAACGCCCATATTTTCATATTTACTGTTCAAGTTTATGATTTGTTTTCTTTCAAGCTAGAACCAAGTCCAAATAGTTATGTTAATTTTTTTTTTTTTCACAACGTGAAAGAGACTAGATTCATGCAATATCACTAATAAAAAAAATGCACGTTTCAGGACTTAAAATGTAAAATAGTAAATTCATTATGATCTTTAATAATATTGAATATTGGTTATTATTTTCAGTAATATTGAGGAGGTTGTTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGTTTGTCAACCGTTTTTGTGAACTTGAATCGTTTCTTAGTTTTCATTTGTTAGTCATAAGGAAGCTAATATATTTCCTTGTTTTATTGAGCAGGAAAATGGAAAGTCTTGAAGTAAGAATACTCTGTTTTTCTCAATTACGTTTTCTACATACATTGTTTTTGTTTTGTCAAATTCATCTTTCGTGTTGTCTCTACATTTGGTAATGTTTAGAATTCTGTTTTGGTTTTAAATGTAGGCTTTAAAGAAAACCTTCAAGAAATTGGATCATGACGTAAAAATACAGGATTTCTTAGGTTCAAGGTAAGTTTCTACGATCATCAATTTGTCAATGTCTTTTACATAAAGCTGTCTATAGTTTCTCACTTTTATCTTTTCTACCTTGCAGCAGCCAAACAGTGGAGGTACAATTTCTTCATAGACAACGCAATGTTTAATAATAATGTCAGAATCTTTAGTTAGAAGTTGAGCAACCAAAATGTTATGATCTGTGTGTAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAGCTCACAGAAGTACATCAGAGACTGAGGTGCAACTTTGGAGCTTTTGGTTGTTAAAGTATTTCTTTTTCTTTTTGGTTTTATAAGCTCTCCTGTTGAAATATTATTCATTTGACCTCTTCAGGTTTAGTGTTTTGCAATCAATTGGTTACTTCAATCCCTTATATATTATTTTCTTGTGCATTTGAACTTTGACATGTTTCTTTATGCTCATACCCACGTTCACATGTCAAAATTATTGCAGGTGATGTAACTTTTGATGTTTTTTAATCTATTTGAGATTTGGGTTTTCTGTATATAAAATGATTTATTATAACGTCAAGAGATCAAATATAACAAATTATAATTGAAAATACTATTCTATCCTCTTCCCATAAACAAAACACTAGCATAGTTATGATGTTGAGTTCTGATAATATTTGATTTGTTACTAGAATGTTATAAGTTTGTTTATAGTATTACAAAAGGAAGTAGTAATTGATACTAGTTTATATATTGCATTATTTATATTTTGGCAATGCGTAAGAAAATCCAATCAAATTTCACATTTTGTATGACATATTCTACCAGTTGTGAGTATGAAACACAACACCTTATCTTTGTTCATAACCTGTACTTTGTTTAGGTCAGAGAAGTGAAACCATTGTACTCGTTCACCTTTCTTAAATATCTAGTTTTTCATAGTTGCAGAAATTTTAGTAGTTGGATTTGAGCAATTCTTATCCGTTAACATTCATCGAACTTCTACTTGATTTTTCCTCTGCTAACATTAACACTCATAATACGAACATGATGCTATATGAAATTGATGTTGTCATACATGAGTTATGGGTCATGAAAGTTTAAGTAATAATCATTAATTAATATTGTGTTTAAATTTTCAACATTTTAGCTATTGGAATAATGTAGAGAAGATCAACAATTTAGAGCATCTGAGGCAAATGGAAGAGTCAATACGAGAATCAATCAATCGAGTCGGCCTGCAGAAGGTAAGTCTTTGTTTCATGTGTAGACTAGCCATATTGCCATGTCATCTTCAAATGACCACTACACCAATCCATAAATAACTAATGAAATTTAGGTTTGTATGTTAACATGTCAACATGCTTTCTGAAATTAACAGGAAAATTTAGGGAAGCACCAACTCATTTCACTTGAATGTGCTAACCAGGTAGTAAATGCTGTATTTTCTCTTTGTTAATATTTCTTGTTCCACTTTTCAATAATTTTATTTGGTATATTATTGCATCATAGTTACAGGAAGGGATGGCTTTACCCTTGATGATGGCAAGTCTACAAGAATCTCAACCACTGTCTTGGCTTTTGAATAATGATAATCATCAATTGTTGTTACCAAATGAACCAAAATTTCTACCATTCAGGTGGGTTAAATCATGTCTATTAATGGTTTATTAGATTTTCTTCCTGTGATTCATCTTTCAATGTAGTTACTGGTTTAATTGTGTAACATACAGTGATAATACTAATAGAGAAGTTGAGTGTTCCACTGACATTTCACTTCCAAGCTATTCAAATTATATTGGGAGCAACAAACTTGAAGTTGGTAGCTCTCCCCAAGTGACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGCTAAATGGAACTACATATTTAAATGTACAACGTTGTGACCAATTTACGTTCCCTCCACAAGATATTGAGGAAGCAAAGCATTTACCTACATTGAACAATAAATCAAACACCGTGGATTACCAAGTTAACAACTTTGATCTTTCCGGTTCACTATTTGAAAATGGACATCAATTTTGGAATTCTGCTTCGGGGTCTTGTGGTATTGCCATGTATAATGAGAACGGCTACCACAGGGTAAGCAATCCTTTTATGTTTCAATGA