Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07067 LG1 101782202 101788140 PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to cytokine stimulus, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, response to light stimulus, detection of cytokinin stimulus, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cellular response to cytokine stimulus, detection of cytokinin stimulus
Cellular Component   located in   nucleus, nucleus, nucleus, cytosol
Molecular Function   enables   protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific
SNP Position Effect Amino acid change
A/T 101782208 3_prime_UTR_variant
G/A 101782209 3_prime_UTR_variant
G/T 101782218 3_prime_UTR_variant
C/G 101782279 3_prime_UTR_variant
T/C 101782575 downstream_gene_variant
C/T 101782593 downstream_gene_variant
T/C,* 101782679 downstream_gene_variant
T/C,* 101782687 downstream_gene_variant
G/A,* 101782688 downstream_gene_variant
C/T 101782916 downstream_gene_variant
G/A 101783010 downstream_gene_variant
C/T 101783149 downstream_gene_variant
C/T 101783191 downstream_gene_variant
G/C 101783234 synonymous_variant p.Arg335Arg
T/A 101783407 downstream_gene_variant
C/A 101783418 downstream_gene_variant
G/C 101783460 downstream_gene_variant
A/C 101783513 missense_variant p.Trp286Gly
G/C,* 101783536 missense_variant p.Ala278Gly
C/T 101783537 missense_variant p.Ala278Thr
G/A 101783551 missense_variant p.Thr273Ile
G/A 101783554 missense_variant p.Thr272Ile
C/A 101783561 missense_variant p.Gly270Trp
C/A 101783600 stop_gained p.Glu257*
C/T 101783609 missense_variant p.Asp254Asn
C/T 101783610 synonymous_variant p.Val253Val
C/T 101783612 missense_variant p.Val253Met
G/A 101783613 synonymous_variant p.Ile252Ile
A/G 101783638 splice_region_variant&intron_variant
G/A 101783689 downstream_gene_variant
A/G 101783695 downstream_gene_variant
C/T 101783827 synonymous_variant p.Leu207Leu
C/T 101783986 downstream_gene_variant
T/C 101784052 downstream_gene_variant
A/T 101784098 downstream_gene_variant
T/C 101784101 downstream_gene_variant
G/A 101784131 downstream_gene_variant
T/C 101784350 downstream_gene_variant
C/G 101784427 downstream_gene_variant
A/T 101784448 downstream_gene_variant
C/T 101784984 downstream_gene_variant
G/T 101785053 downstream_gene_variant
C/T 101785108 downstream_gene_variant
T/A 101785143 downstream_gene_variant
A/G 101785367 downstream_gene_variant
T/A 101785499 downstream_gene_variant
C/T 101785506 downstream_gene_variant
G/A 101785594 downstream_gene_variant
T/C 101785615 downstream_gene_variant
C/T 101785649 downstream_gene_variant
T/A 101785712 downstream_gene_variant
A/G 101785843 intron_variant
A/T 101785860 intron_variant
A/G 101785869 intron_variant
A/G 101785913 intron_variant
C/T,* 101786045 intron_variant
C/G,A 101786054 intron_variant
G/A,T 101786072 intron_variant
T/C 101786077 intron_variant
G/A 101786492 intron_variant
A/G 101786502 intron_variant
A/T 101786520 intron_variant
T/C 101786591 intron_variant
A/T 101786594 intron_variant
A/C 101786700 intron_variant
T/C 101786703 intron_variant
A/C 101786913 intron_variant
G/A 101786922 intron_variant
G/C 101787093 intron_variant
G/A 101787104 intron_variant
C/A 101787180 intron_variant
A/C 101787252 intron_variant
G/T 101787379 intron_variant
A/G 101787502 synonymous_variant p.Leu137Leu
C/T 101787558 missense_variant p.Val119Met
A/G 101787574 synonymous_variant p.Leu113Leu
C/T 101787944 5_prime_UTR_variant
A/T 101788024 5_prime_UTR_variant
G/A 101788080 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07067.1
MAFQDHLQHEIAFQRFTEEQELSEGRDMQQRLPPTWLNSVNAAQQRQQNFLDGAAEKSVDRNRGESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALANNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNGNLYEGSFDGGESLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNTKTKRKSAGESSNQSFM*


CDS Sequence:
>Vu_07067.1
ATGGCTTTCCAAGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGCTGAGCGAGGGAAGAGATATGCAGCAGAGGCTCCCACCGACATGGCTCAACAGCGTCAACGCGGCGCAGCAGCGGCAGCAGAATTTCCTTGACGGCGCCGCCGAGAAAAGCGTGGATCGGAACCGGGGCGAGAGCAATTGCGAGTCGGAGGATTTGAGGGAATACAAAGCGGACATTCTTGGACACCCTCTCTACGATCAACTGTTATCGGCGCACGTGTCGTGCCTCAGGATTGCCACGCCCGTCGACCAGCTTCCCAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTGGTGGAAAAGTACTCGGCACTCGCGAATAACGGCGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTCCTGTTGCTCTGTGCATTTAAAGAACAACTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTCTCTCCCGGAGAAGGTACGGGTGCAACAATGTCAGACGATGAAGATGATCAGGCAGAGAGCAACGGCAACCTGTACGAAGGGAGCTTCGACGGCGGCGAAAGCCTTGGGTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGATCCTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAATTGAAACAGGGTTACAAGGAGAAGATCGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCAGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCATACCCCACTGAGGAAGACAAGGCTAGACTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAATAACCCTTCATCTTCGAGTAACACCAAAACCAAGCGCAAGAGTGCAGGAGAAAGCAGTAATCAGAGCTTCATGTGA


Promoter Sequence:
>Vu_07067::LG1:101788140-101790140(-)
GTAAAACTTTAATTGTATTATGATTTCATCTTTCAAATTCATGAACCGTTTTTTAGCTCAACCTCAATTGAATGCACTTGGGTTCGATTCGGGTCCATTCTCAACTAGACATTACATTTCTGAACTTATGTTTATAACTTTTTTTATATATAGGTAGTGTTATTTTTCAATTAACTATAGTTAGAGTTTTTTTTTTTCATATAAGTAGTAGTTTTCAGATTATGACAGGTAAAACTTTTTCTGTTAACACATACTTAGCTTTGAGTTGATGTTATTTAGGATCTTTTTCATCAACACTTAATTTATAGTTGGGATTTATTTAATAAAACAATAATATAATTTAGACTTATTTTTTATGGACATAAACTATATATTTTTATCGATATATGTAATAATTATTTCCTCTTCGTATATATACAAAGGGTTTTATTTAAATAAAAAATTAAAATCGTTATCAGCTACGAGTGATGGTGGACCGGTAGATGAGTGGAGATTTCGCTGCTATATGTTGTAATGATAACTTGATGTTAAAAATTGAAGTTTAATTTAATTTTATAAAATGGATGTAAAAGTATATTTATAATTATTTATAATATACATATGAAGGAAAAATATGAAATGGTTTGAATGGGTGATGAAGTAATGATAGCATGGATGGATGGAGATGAAGATGGTTGAGGGGTCCAGCGGGGTCCAGCGGAGTGCATGGTTAAGATAAGCCATGTGTACGAACCTGATTCACTCCTACTTTATTTCGCACTCCCAAATCTTGGAACACACAGTTACTGGTGAAGTGGTCCATGAATCCTGGGAGTGACGCGTGTCAGTCGTGGGTGCTGAGGTCGCTGTCGGGTTGGGTAGTGGCTAGCCCAAGTTCAGGAACGCCAACGTCCACTCTGCTCGGTGTGGGCCTCACCTTCACTGCCACTACCGCACCCTCTCATACGTCGTTTTGGGTTTCTGGGACCTCTGACACCGACCCATTCCACCACAAATAAAAGACTCTGTTTCATTTTTACAACGCCTCAGTGCTTTTCGATTCAAGAGATGGAAACTGGAAAAGCAACTTGTCACTTCAACCCATCAAAAAACTTTCCCCAAACCAACATCATCAAAACTTTTCCCAAATTCATTTTTCATCTTTCCCAGATGTCTTCAGCTTAGTAGCAAAACAGACTCATTCATGGAAATACGTTAACCCTCAACTTCATGCCTATTTTAAGTATAGCAATAATTACTCAAATTAAAATATGCTATGCTGCACCTCACCGATTCACGTCAAATTCAATTACAAACTTCACACTTCATTCAAAACCATAATTCCACGTCACAAAATCACTCCTATAATAGGGGTAATATTTTTTTTTTGTCCATGCACAAAATAGAAACATGTATAATACAACTTAAACGGATAACAAATAACTAACCTTTAGATATTTAAGAGGCTTTATTGTTTGGAACAGAACAGTTATCTTAATTTTGTTTTTCCATTGTTTATTTATTGGTGTTAACTGTTTGGACCGGTGAGGACAGTTTAGTCTGGTGTTGACTCTATCAGTTCAACTTGTTCTTGAAATAACAGCAGCAAAAGTAGAATCCCTTTGTCAGGGTTTAATTCAATTACAACTCAGTCCTTTGTGACAGTTTGAACGTAGAAGGGAACGTGGGCTTTGAAATCTAGGATTAAGGTGGTGTTTATGTTTTGCTTTCATTAATCTCAAACTAATTGTTTACTCTTAAGGTGGTTTATTTGGTAAACAGTGTAAAAGAAAAAAAAAAAAAAAAAGAGTGAGTAGATTATTTTTGATAGGTGCCTCCCACATCGATGATTGATCAATTTTTTTATCCGTCTTTGTCTTTTTTTATTATTACGGGAAAGCTCCAATGAGTAGTCTCCACAAATCTCTCCACGTTATCGCCAATCCCACCGTTGGATATCATCCACACCTCGATCCCTGCGTCGACGTTTCCAAAAGTCTTTCCATAAAAAGTGCTTTTCC


Gene Sequence:
>Vu_07067(-)
GAACTTCTTCTTCCTTCTTCCTCTTCTCTCTCGTCCTTTCTTCACCGCAACTCTTCACCACCTTCGACGACAACAACAAACAAACGGACAATCCCTCTCCTTCCAAACGCGCCGTTTCTCTTTCTCCCTCGAATCCACGCTTCTCTCACTTCCATCGAGAAACAAAGCCACCTAACCACTAAAATGTAGCGAGCAAGAACAAAAACAAAAGCGCAGAATCGGTTAACTATGGCTTTCCAAGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGCTGAGCGAGGGAAGAGATATGCAGCAGAGGCTCCCACCGACATGGCTCAACAGCGTCAACGCGGCGCAGCAGCGGCAGCAGAATTTCCTTGACGGCGCCGCCGAGAAAAGCGTGGATCGGAACCGGGGCGAGAGCAATTGCGAGTCGGAGGATTTGAGGGAATACAAAGCGGACATTCTTGGACACCCTCTCTACGATCAACTGTTATCGGCGCACGTGTCGTGCCTCAGGATTGCCACGCCCGTCGACCAGCTTCCCAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTGGTGGAAAAGTACTCGGCACTCGCGAATAACGGCGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGGTTTGTGTTTATTTGTTTATCTCTTTTCTTTCTCCTTACTAAATTAGCAAACCTGCTATCTTCTTTGTACTTCAATTCCGTGTGTTTTCTTGTCGCACTACTTTAACCCACTTCTCAGGAGCACTTCTACTTCTAAGAATCTTAATTTCATTCAATTCCTCACTTTGCTTCTAAGTGCTACTCTGAATAAATTATTACCTAATTTCCGATTCCGTAATCTCAATTAATTTCTATGTATTTAACTTTAACAATTTTTGTAAACAAAGGTTCAATCGTGGGATTTCATTATTTCTTATCTTTCTGATTTATGGAATCATTTTGGCTTTTGTGTCTATCCTCATTCATTAACTCATTTTTTTATTACGGTCTTGCTGCTTTTGTTAAACGATAAATTTTCATGTCAAGATTTTTATCATGGACAAGCTAAGAAGAAATCAGAAAATGAATAATGGGAATGATGGTTTTAGAAGTTTGATTCTGGATGGATGGTGGTACGATGCATTATGTGGTGAATCTGATTTGTCATGGAGTGGCTCCCCTTGAGTGTTCTCATGCTGCTGCTTCCTACAATAACCTTTAGGAGTGCTTTATGGAATCTTTTCTGTTAATGCTGTCATGATCTTCCCACTTGTTCACTTACTCTTTTTTCTTTCCTTTCCCCTTTTTGCTAAACTTTGATGGTTCAGTTCTTTAATTCTTATGGAATATGTTCTGAGCCAAAGTTGAAGCTCTCGTCAAGTTTTCTCAACCTTTACTTCCTCATTAATGTACGTTTCTGACTTCGCCAAGTACAATAATGAGGGAATACGGAGTTTGGTGATTCTGTACGTATCAACTGGACGTAGTGTTTGTCCTGTAGTGTATGGTAGAATCAACTATAATTAAGTTGGTGATTTTCAACTTTGATTCTGACTTGATATTCACTTTACACATAATGATTGGAGGATGCGAAATATATAGTACACTCCATTTGTATGATGGAAACTCTAATTAATAACATATTTGTGTTCATCTAAACTGTATTTAACATTTATGATCCGTTGCACTTGTCGTCGTCTTTTCTTAGTTTTTAATTATCTGAAGCTCCTTTATGAGTTTTGCTAGTATTTGGTTGTTGCAGACCCATTATGTCCTGTTGCTCTGTGCATTTAAAGAACAACTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTAAATTTTCAGCATCTTTTTTTTGGCTCCCTAGATGTTACCCTGTCTTTTTTCTGCTCATTATTACTCTCTCGGTAAACAAAACAAGGAGAGAGAAAATTAATTAATTAATTAATGAAAAAGGAGATCAAAACAGACCACACACTCCACCTCCTCCAATACTTTCACTGCATTCACTGTCTTTCTCCATAGAAGAGGAAAAAGAAAACTAGGAGGAGATAGATAAGAAAAACAAAACTTAGATAAGCAAAACTACAGTGTGTATACCTACTAGGTATCTTTAATACAAATTAATATTAAGCAAAACTACACTGTGTATGCCTACTGGGTTTATATTTCAGTAAGAAAAGAAAATAATTTAAAACTTTGAAATAAAAAATTGAAAATTTCATACATTAACAATAATTCAATATGAATTATTGTTTACCTTTCTTATTGTATCTCATACTACATTGCAGCTGAAAACTCTATCAAAACTCGTAAACTAACTAATTCAGATTTTTTAGAGTAATAATAGGATATTATCATATTAAAGAAGAAAATCATTTTTTTTTAAATAATGACCCATCACATTTAATTATTAGGATATATTATCTATCGCAGTATAAAATATATCCACATCCAACTCGTCTTATGTCCACATTTCTTCTCAAACATTGAACACATAAAAGTGTCCAAATGCTAAGAAATTAAGTTTCACCGGTGGAAAATGGAGTTAAGTATTTTATTATAGAATAGAAAGGTGAAAGAGAAACGACGAAGAACGAAAAGTTAAGGCTGTTCTTACTCAGATCCCAGGGTGAAGGGGCTTTGAATAATTGGTGACAGTGAAGGAAAAATGAGTGGGTAAAATGAACCGAGAAGAAAAAAAAATGCAAAACTTGATAAAGAAATAGCATATTAATCTATGGCAAAAGGAAAAACTAAAGGAATAATATTTTTGACGAATTAAAATGTTCTCATTCCTCCCACTCATGAAAGTGGGACTAGTGGCATTTTTTTCTTCTTTCATAAATTTTCATTGAATTAGGTTTTAATTTTAGAAATATCAGACTTTAGAAATGTCTTTACATAAGATAAAATGTTAAAAAGTATTTCGATATACAAAAATATTAAATATAAAAATATTTTAGTCATATAGTTTAAAAAATGCAAGTCAAATATAATTTTTTTTTATAATTAACCGTGAGAAAAACAAATATTTTTTTCTTGATAAAAAATTGTAATCTTTGATTGTATTGTCAATGGAAGTTAAATTAATGAAGTGGAAAGAAGAGAATAAAAGGGTTCTTATTTGCCAGTGTTGAAATTGATACCACATAAAATTTTAGTAAGAGATGTACAGATATTATTGCTGAAATGGTAAATATACCTGAATCTTTTGTTGATGTATTCTGATTTCAAAATATTATTCCCATGATTGCTTTATTTGAGATTGGTTTTATTTTAAGTATGTCAAGACATAATAATCCTTTAGAATGAGAAAAGAAAATAGTAAAAACTGTAATACAAATGTTATGTGAAATAAATCATATAAAAAATAATGAGATAAAAAAAGAGATTAAATACTGTTACTCCTTTAATGTACAAGCATGTGAATATTGTCGAATTTATGTTCCCTTAACATCCCCACGTCAAACTTAACATGCAAAGCATTGAGTGAAAATCGATAAAAGCCCGTTTCTTGCTCTTTCAAACGATATGTCCAACTTTTACCATAACTGGATGCTCTAAAATAGACCCTATTAATAACCCCACAGCTTCTTCCCACGAATTAAATTACTTGTCCTCTTCGTCGTGTATTTTCTTTGTCACTCAAAAGAAATATGGGTGGAAATAACTAATAAATAAGAGTGAGAAGGAAAGATAATTTTTTTTACGGCATGTTAATTTTTAATAATTAAGAGATAGAAGGAAGGAGAGAAGAGATACAACATATTACCAATTATTAGTAATAGTTTAATTATCAAAACGGTGCATCCAAGTTATATTAAATGAATTGTCGACACATTACTAATTATTAGTAATAGTTTAATTATCACAGTTCAGTAATTTTTGTAATTAATAATGTGATTGACTACATAAATTGTACATCCAACTTTTATTCTTAAAGGAAGCACTCCATCCGTTTGAAAAGAGTTTGGAAGAGTTAATAGTAATAAGCATATATCCTTAAAAGTATTCTTCTCAGAAAGCAATGATAGAGCGAGATTACATATAAATAGTTGAATGATGAGCTTAGATTCTGGTGTAAAGGTTATTGTGTATTTATATTTGCGTCTTTGATTAGTTATAAAATGAAGGTGATGAGGATGAATATTGAAATATAATGGATGAGGATGCAGGTGTCTCTCCCGGAGAAGGTACGGGTGCAACAATGTCAGACGATGAAGATGATCAGGCAGAGAGCAACGGCAACCTGTACGAAGGGAGCTTCGACGGCGGCGAAAGCCTTGGGTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGATCCTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAATTGAAACAGGTAATTGTTAAAAGTATCATCAGTTTATTTTTGTCTGAAGAGCAGAAAATAGTGTTAAATTTGTTTGTGTATCATCAAGGGTTACAAGGAGAAGATCGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCAGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCATACCCCACTGTAAGTTTGGACATACATCTCAATCATAATATATTATACTTGTTTCCATTTTTATATTTTAAATAATATATATATATTATGATAAAATAAGAAGATAGATATATTTTTGTGAGCATGACGGTATTTTCAGGAGGAAGACAAGGCTAGACTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAATAACCCTTCATCTTCGAGTAACACCAAAACCAAGCGCAAGAGGTACCTTAATTCTCAATATTAATTATCTTATGTTTGAGTTTTATGTACTCATCTTTTAATTCATCTAATTTATTCCAATGCAATATATCAATTGCTAGTTTAATTTTTATATTTTGGATGTCGCTAACGTATCACATCATTAAATAACAAACATTTTTTTTAATATTTTTTATTTAACTTAATCTGTCTTGTAGCTTTATTTTTATATGTATACATGTCGATTAATTTATTTATTTAACGCAGAATTATGTAAGAGACATCTCTACAATTTAAAAATGAGGCGTGATCCATGCATAAACCAAATTGCTCATCGATCGATTATATTCAAAACATAAGGATTCACTTTTAGTTGATTTATTTATTTATACTAATTTTTTCCAGAAAATAAGACTTATCGATTCACGGTGAGTCAAGCCAGGTTATGTTTTTTCTAGCCCACCAAAAGAACCAACTTATTTTACTAATTCTTTTTCTCAACCTGTCATGTTCAAGTTGAGCAAGTAATTTCACTTAAATTTACACCTCTATTAATATCAGCAACAATATTAAAAATATATCATGGGGAGAAGTGATTAATGAGTAGCATTTTATGTGGATAGGAATAATTGCATTAATAAAAATTTAAAAAGTAAATCGTGTTTGAAAATATTGTTATATCTTTTATGCCTACATCTGATTGCTATTTTTGGTTGGTAGCAGTGCAGGAGAAAGCAGTAATCAGAGCTTCATGTGAATGGTCGCATATTTTGAACAAAAGTTATTGGTAATTATTCTTCTTTTATGCGTGGTCGTGGGATTCTTAGATCTTTACAGTTAGCATGAACCTGAAATGATGAACTCTGGATCTAAAGGTAAATTCATGATAAAATTAATCACTGTTTACAGAAAATTAGCCCTTCCTGGTATTGTTGTATATGAGGCTGCTGCCACTTCATTTCTGATATTGAGGGAGGCACAATTAATCTTTTCCATTTAATGGGCAGCATGCTGATACATATATATATAATTTTCTTTTTCTGCTTCTTTC