Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07195 LG1 103224937 103226287 PREDICTED: transcription factor MYB36
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, endodermal cell differentiation, negative regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of root morphogenesis, positive regulation of transcription, DNA-templated, endodermal cell differentiation, positive regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, ion homeostasis, endodermal cell differentiation, endodermal cell differentiation, cell differentiation, regulation of root morphogenesis, negative regulation of cell population proliferation, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, regulation of root morphogenesis, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of root morphogenesis, positive regulation of cell differentiation, positive regulation of transcription, DNA-templated, endodermal cell differentiation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of cell differentiation, endodermal cell differentiation
Cellular Component   located in   nucleus, Casparian strip, Casparian strip, Casparian strip
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 103225075 missense_variant p.Val315Ala
A/G 103225381 missense_variant p.Met213Thr
C/T 103225383 synonymous_variant p.Lys212Lys
G/T 103225405 missense_variant p.Pro205His
A/G 103225435 missense_variant p.Ile195Thr
T/A 103225676 missense_variant p.Asn115Tyr
A/T 103225852 downstream_gene_variant
G/A 103225957 stop_gained p.Gln80*
T/A 103226069 downstream_gene_variant
A/T 103226076 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07195.1
MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNTKDTNNGIEENSYSNALSSSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPFQEKMIQSLQSLNDGSNPVVQDALPTPHVEQGQKDEFIYKPQHDGAKIHSPQVHLLENIPSSNSGVSFVASESNNNPMHSSLAPRAEAVEQTNNVGFQQLGALQTELDDILNNRTMGYVPQEDHQMAEFDCFREMNGSKDSLIWWSNDSDTRSASSNSWDSSATPALLTQGMFQDYELGYSL*


CDS Sequence:
>Vu_07195.1
ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTCAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTGCACTTAAGGCCTACATTGAAAAGAACGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAATCTTTACATTAGCATTGGTAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAACTGCTTGGGAGGCGCAAACAATCTAACTTCAACACAAAGGACACAAATAATGGAATAGAGGAGAACTCTTATTCAAATGCCCTAAGCAGCTCAGCCCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAATAACCCTGCGTTGTGGCCTAAGTTGCATCCTTTCCAAGAAAAGATGATCCAGAGCCTGCAATCTTTGAATGACGGCTCTAATCCTGTGGTGCAAGATGCTTTGCCTACCCCCCATGTCGAACAAGGACAAAAAGATGAGTTCATCTACAAGCCTCAACATGATGGTGCAAAGATCCATAGCCCACAGGTTCATCTTCTGGAGAATATTCCTTCAAGTAACAGTGGAGTTTCCTTTGTTGCTTCTGAGAGCAATAATAATCCAATGCACTCAAGTCTTGCACCAAGAGCTGAGGCTGTTGAACAGACTAATAATGTGGGATTTCAGCAACTCGGTGCACTGCAAACTGAACTAGATGACATTCTGAACAACAGAACAATGGGTTACGTGCCTCAGGAAGATCATCAGATGGCTGAATTTGATTGTTTCAGAGAGATGAATGGTTCCAAGGACAGCCTGATTTGGTGGTCCAATGATTCTGATACCAGATCAGCATCCTCAAATTCCTGGGATTCATCTGCTACTCCAGCTCTTTTAACACAAGGGATGTTCCAAGATTATGAACTGGGTTACAGTCTGTAG


Promoter Sequence:
>Vu_07195::LG1:103226287-103228287(-)
ATATATTAATTAAAATTATTAAAAATCACAAACTTTTATAGATGCTTTTAATGAATCTCCCATATAAATTGTAATCTTCAATATATTTTCACCCTACTCACATGTTAATTGTCACTTGGTGTGTTGTTTTTAAATCTCTTTATATAATAGTTAATCGATTCAAAATTTTGAACTTAAAGCTTGTATAAGTTTTTTTTATCCACAAAAAAAAATATGTTAAATAAGAATAATAGGATTGTTTCAAGTCTCATACAAGAAACAAATAAAGAAAAAAGATGAAAAAGTTATAACACATTCAGTAACTAAACTATATATGTCTAGAAAAGCATTCCCAACTAAAAAATATAAAGCAATCTATAGAACTATTTTGTTTCCGTAAGTTTCTTTATATGATGTAAAACTCCCTTCACTGCTAAATTGAAACTTCTTCCGAAACTCTCTGTTCCATTAGCATAATTGGAGTTCTTGCTCAAAATATGCATAAGAAGATTGAGTTTACAAAATTGCTTAGAAATAAATAATAATAATACTCTTTTTTTTAACAAATAATTAACGTATCATTTAAATTAGAAATAAATCTCTATTGCTAGATAACACATTGACATAATGTTGAAATTGTTTAAGATTTTGTTGCTTTCTCCGATCGATGAAGGGTTATGATATAGAACTTTGTCAAGTAACTTAGACCTAATTTGTATGATGAGAAGAATTCAAGCTAAATAACTGTGATTTTGACTTCGAGGGAGAATGAAGCACTTGAGAGTGGAATAACATGAACTTGAGTTAGAAATTACTAGCCGATACGACGGAAATACACCAGTTTTATTGGTGTGTGGTTTGACATAAGAATGAGTTGGTTAGGATTTTGTGGTGAAAACAAAGCAAGGGCACATTTTCAAGATATTTGACTATTTTTTCTAACTTTCATCATCAGCTCGTCAACATCTATATATTGGTTTGACATACACTTCAATCGCTTTAAACTGTATAGTGCTTATGTTGAGACCTTAAGAAAAACCAATATAACTATGACCTAGTTTCAAGTCCGTACAATCCCATGAAGATGACCCAATTTGTCGCAATATTTATTCAATTTCAATTTAAACGCAACCATCATGGAATATATATATATATATATCTATCTGAAATTCAAGGCTGAAGAATTACGAAGGAAAATATTCCATCTTTGATGAGAAATGTGACATTTTCCAAAAATGAAAAAGAAAAGTTCTGTTTTTGATTCGGTACACTGCGACATTTCCATTCTTCATCTGCGTACGCACTTACCTGCTAAAATAATAGACCAGAAGTTAAGCTTATACATATTTTCTCTGCAAATGTATTTGTTTTTTACATGATCACGTTATTGACTGAATCAAAGCAATATGTGTCTCCTTTCCACGAGAATTCCTGAGTTAAATAATATTACACAGGGGTAATTTTTTTTAAGAAATAATAATTTACCAATAGGAAGGTCGCAGTACATTTCCCACAATAGAAAAAGATGTGTTGGGAAGGCTTGACATGGAACATTTTGAAGGATAATGCCGACAAACTAAGAGGATGGAGACTTCTATTGATCAAATACTTGTAGCATTGGGTTGAAGTATTAAACTAATAGAGCTATGAAAAAGCAGTGCAATTTTTTATGAAAAGGAAGAGGAAATTTATGTTACGTTTGTCCAGTTGCATGCATAATTAAACGCGGGTGACCGAACTAATCCAAAAAGGAAGACAGAGAAAGAAAGAGAGAGAAAGATGGATGAAAAAACCCTAGAAGAAAAAAATGGAGTTGAAAATAGCTAGTGAGGGAATGGAGGGGGTGAGGTGTGTAAGACTTTTTGTCCTTTTAAGAATCACATCAGCCATACTTGGCTACCTATAAATCACAACCTTCCTTCGCCGTAGTTTCCCAACAATCCTAGCTAGCAAAGTTGATATTTGCTTCAACAAAAAACATAAAGAGAAACCTAATTGGAGAGAGACAACAACACAACAAC


Gene Sequence:
>Vu_07195(-)
ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTCAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTGCACTTAAGGCCTACATTGAAAAGAACGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGTACACTCCTTTCTTATATGTTTATTTATTTTCTATTGAGAGTTTTATGAGACCAAGAGAGATCTTATTGATGGATACAAATAATTCCCAGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAATCTTTACATTAGCATTGGTAGCAGGTCATTCTCTCTCTCAAAAACCCCAATCTCTATCTTCGCGCCTGTGCTGTTGTTTCTCGACATAACTGTTTGTCCTTTTTCTTTGTCACTAGAATATGTCTAGCTACCTCCACATGTTATTTCTTTGGTTGTTCCTAGAAATTAACCGAACATGTTCCAACATAATCTGTATAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAACTGCTTGGGAGGCGCAAACAATCTAACTTCAACACAAAGGACACAAATAATGGAATAGAGGAGAACTCTTATTCAAATGCCCTAAGCAGCTCAGCCCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAATAACCCTGCGTTGTGGCCTAAGTTGCATCCTTTCCAAGAAAAGATGATCCAGAGCCTGCAATCTTTGAATGACGGCTCTAATCCTGTGGTGCAAGATGCTTTGCCTACCCCCCATGTCGAACAAGGACAAAAAGATGAGTTCATCTACAAGCCTCAACATGATGGTGCAAAGATCCATAGCCCACAGGTTCATCTTCTGGAGAATATTCCTTCAAGTAACAGTGGAGTTTCCTTTGTTGCTTCTGAGAGCAATAATAATCCAATGCACTCAAGTCTTGCACCAAGAGCTGAGGCTGTTGAACAGACTAATAATGTGGGATTTCAGCAACTCGGTGCACTGCAAACTGAACTAGATGACATTCTGAACAACAGAACAATGGGTTACGTGCCTCAGGAAGATCATCAGATGGCTGAATTTGATTGTTTCAGAGAGATGAATGGTTCCAAGGACAGCCTGATTTGGTGGTCCAATGATTCTGATACCAGATCAGCATCCTCAAATTCCTGGGATTCATCTGCTACTCCAGCTCTTTTAACACAAGGGATGTTCCAAGATTATGAACTGGGTTACAGTCTGTAG