Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07235 LG1 103625045 103628538 PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   seed germination, root development, auxin mediated signaling pathway involved in phyllotactic patterning, regulation of transcription, DNA-templated, positive regulation of embryonic development, regulation of transcription, DNA-templated, auxin mediated signaling pathway involved in phyllotactic patterning, regulation of transcription, DNA-templated, plant organ morphogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, auxin mediated signaling pathway involved in phyllotactic patterning, auxin mediated signaling pathway involved in phyllotactic patterning, post-embryonic development, leaf phyllotactic patterning, regulation of transcription, DNA-templated, phyllotactic patterning, root development, plant organ morphogenesis, lateral root formation, lateral root formation, callus formation, positive regulation of embryonic development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, lateral root formation, auxin mediated signaling pathway involved in phyllotactic patterning
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 103625462 missense_variant p.Ala86Thr
G/A 103625494 synonymous_variant p.Pro96Pro
T/A 103625700 intron_variant
G/A 103625701 intron_variant
G/A 103625709 intron_variant
G/A 103625964 intron_variant
T/A 103625993 intron_variant
C/T 103625997 intron_variant
T/A 103626145 intron_variant
C/T 103626148 intron_variant
T/A 103626227 intron_variant
A/T 103626228 intron_variant
G/T 103626389 missense_variant&splice_region_variant p.Gly188Cys
C/A 103626488 intron_variant
A/G 103626702 splice_region_variant&intron_variant
G/A 103626706 intron_variant
T/A 103626770 intron_variant
A/T 103626789 intron_variant
A/G 103626818 intron_variant
A/T 103627337 intron_variant
C/G 103627478 intron_variant
A/C 103628218 missense_variant p.Glu521Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07235.1
MDSSSSPPNNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFASYPSLTLTGSSTVDAPPEAAGRGGATNLSIFTAAPKFEDFLGSSATADTTATGAPPQLPQFSTDNNLYESELKTTIAACFPRGFAAEASTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKTSADSASESKSHEASRSDERDPSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTASVTTTSPFQMDLSSAPSNTGSENNAAFFSGGGIFVQQQSGHGHGNGNGHGHGNGSGGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME*


CDS Sequence:
>Vu_07235.1
ATGGACTCTTCTTCATCACCGCCAAACAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCCTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCGCCTCTTATCCATCTCTCACACTCACAGGCAGCAGCACCGTGGATGCACCACCGGAGGCAGCAGGCCGCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTTGAGGACTTTCTTGGCAGTTCCGCCACAGCAGACACCACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCACTGACAACAACCTATACGAATCGGAGCTGAAGACAACAATAGCCGCCTGCTTTCCTCGCGGCTTCGCCGCCGAAGCAAGCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTGGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACTCGGCACAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGGAGAGATGAAGAACATGACGAGGCAGGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCCGAGGCCTATGACATTGCAGCTATAAAATTCAGGGGGTTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAGAGCATTGCAAACAGCACACTTCCCATTGGGGGTTTGTCTAGCAAGAACAAGACATCCGCGGATTCGGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCGGACGAACGAGATCCGTCATCAGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCACAATCCTACTCTCGACAACAGTGGGGTCAGGAACACTGCTAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAATACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAGCAAAGTGGTCATGGTCATGGAAATGGGAATGGTCATGGTCATGGAAATGGAAGCGGTGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACTCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCGATATTTGGCATGGAATGA


Promoter Sequence:
>Vu_07235::LG1:103623045-103625045(+)
AATTAAAATTATTATTGTACATAGAATAAAAAATATTGGCATAGCTTCATATGCAAAAGTTAAAATTTTCTTTAGTCTAAACATTAAAACATTGAGTAGGCGTCTATAAAGTTACATGCACAAAACAGTGTACGCCTGTTCTAAATATACGATACAACTACTCTTATTTTATACGATCCCATTTTTTGTATGTTCTAAATAATATTAATCACGAACCTAATTAAATTAATATTTTTATAATAGCTTAAAATCAAGTTTATTATTCATATTTTATAGACAAAATAAAGTTATGTGATTGATAAAACGCTCGTTTTCTCTACTGTAATTTGATTTCACTCAAATATTTATACAGAGTGTACATGAATTACATACTCATTTTATACAATATTTTTAGTTCTTATTTTTTTTTACTCTTTTATAATTTTCCCGTATTTAGATTTCCTGTTTATTCGTCTAAAACAGTTATTGTTCTAGTTATAGATAAGTTACCAATTCATTAACAGTTAATGTTGGACTTTGGAACTACAGAAAGCAAACAAAAAAATCTCAATTAATATAAATTTAACTAATTTTTTGTCACTAAAATATTGTGTTGGTTTGTACTTTTTGTTTCTAAGAGAAAAACTGAGAAGATATATTCATATAAGCTTTATTTACAAGGCATTTCACAAAAGATATTAATGTCGGTTAAAATTTTGTTAGACTTATAGGGTTGTGTGTCTTAAAAGTTTGGACGTAAAATGTTTGTGATTTTGAACGGAGTGCTTTAAATTGTGGTGAAGAAAGTTCTGAAAAGGAAAAATGTGAAATTGATATAAAGATTGGTAAAAAACGAAAGTAGTAGGGTTTGAGAGGAGTATGGGCGGGAAGACGGGACAATGAAGGAGTCAAAAGAAAAGGTTGTGTTGTGTTGGTGCGCTTTATAAATTCAGAGAAAGAAACACGCGAGTTTATGTTCCCATGAGCCACCATGTTTTATCATTAATTTGGCTTAATTTACAGAGATGGCTTAATATTTATGTAAGAGAAATAAATGAATAGAGAGAGAGACCAAGCATGTTCAAATCGAAATGGTTGATGGGTCACCGTGTCCCCTCTTCTTCCCTCTTGCTTCCCTACAATCATACACTAAACATTACTAACACAAAATGGTGCATCATCTCTTATACACATGTCTATCATCAATCTTTTTATTACTTCATTTTTTACTATATGATCTTCCTCTATATTCTAACTTAATTCACCCATAAATATCTCTATTATACCCATACTTTTATTGCGTAGTACTACCATTTCCATCTCTATCCCAACCGATGCTTTTTCAATATTGGGACCGCCCATTCTTCCTGTAAAAACCATCCACTTTGCCTTCCTACGCTATATTTTAATCTTTTCTCTCCCTCCTCCTTAATTTCCTCTTCAAATTCAATTTAATAACCTCCTTCCTACTACTAATAAAATGCACCAATCGGTGGAGATCAAATCAAAATTTAGATAAAAAAAAATATGCCTTTTTTTCTTCTTCGCAGTATCAGACATGATCATATAATAACATGATACCGTATGCATATTGACACAATTTTGAACAGGGATAGATATTTGTCGGTTGCGGGAGTGAAGATTATTTTATGGATATGTTAGGAAAAGATATATATGCACACATGCACGGGAGGCATGGGCATTTTATGCATTCATGGATCGTATTTAAACATATTTGTTATTATTAGAACGTAATAGTAATAAAAAAAAGATTAATATATTATAAAATGATAGCATAGAAATGTCACTGTTGTGTGGCATATCTATCTACAGCCATCCTAAGAGAAAGAACCTCGTTTTTGGTGAACCCTAAGAAGCAGCTGAGTTGAGTTGAGTTGAGTCTCTCTCTCTTAGACCACCTCTATATCTGTGTCATAATCTAACCCCTTTCTTCTTCAACCTTTCTCCTTCTCTCTCTCGAATAGATTCTATAAGATCGCAGTTTCCAAAGAACCCAACTG


Gene Sequence:
>Vu_07235(+)
GAAGTTCAAACCCCATAATCTCTCTTTCACGTTCATCGAAGACAACACAACACACAAACATGGACTCTTCTTCATCACCGCCAAACAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCCTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCGCCTCTTATCCATCTCTCACACTCACAGGTTCCCTTCTCTCTCTCTACTCCTTAATATTTTTTTTCCTCTCACTTTAAATAAATTCTCCCTAAAAAAATATCTTATTTATATTAATATTCTACAACTTCAGGCAGCAGCACCGTGGATGCACCACCGGAGGCAGCAGGCCGCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTTGAGGACTTTCTTGGCAGTTCCGCCACAGCAGACACCACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCACTGACAACAACCTATACGAATCGGAGCTGAAGACAACAATAGCCGCCTGCTTTCCTCGCGGCTTCGCCGCCGAAGCAAGCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTGGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACTCGGTATCTTTTTCATCGCCACCTTTTGTTTCACCGTCATTGTTTTATTTTTAAATAATTTTTGTTTATTTATCTTTTTTCCTTGTTTTTTTTAGGCACAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGGTAAAACTACTATTACATGCTAGTTTTAGGTATTATTTATTGCTGTTAGAGAGGGGTTGTGTGTAACGTGCACCGGGGAGGGTGCAGGCTGGAACCGGGTCCACGAGATCTGGGACTGAGTGTGAAACGTTCCACTGAATGTGACCGGAATAAATGGGAGTAAAAGAATGTGGCTCACCATGTATAATCCCAATGAAAACCCTTCTCAATGGTTCAGATTGCTCTGCCAGCCTCGCAGGAGCATTAGATTGCTGAGTTTGTGTGTTTAATAACAGTGCGACGAGTGTCGTGTCTGTCTAGGTTTTACGAAGTGAAACAGTGAGTGGCACAGTGCGTGCTTCTTTTTCTTTTTGATTAGTTCATTAGTGATATTAATAATATTATTTTTTGTGTGATGACTGATGTAAGTGAATGGGAGGTGCTGGTGTTAAAGATTCTGACCGTGCTTTCTTTTGTTTCTTTGCGTGGCTTTTGTACCTGGGGAATGATTGCTGACTCGCGGGATCTTTTGCTCATTATGTGGTTTCAGTTTATTTGGGTGAGTATGATTATTACTTTGCAGCATTACATGGCTTGGTTTAGACATTGACCTCATCATTTTGTTTTACCGTCACAGCACATATTCTCTTCCATCTCCTGTTCATTTATGATCATGAGTTTGATTGCGCATTTCTTAGATTCAGATTCTTCCCAAGGATACTAATCATTTTAGTCAAAAAATGACTTTTTTGTTTCTTCCTCCTTTCTGTGTTTAGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGGTTAGTAGAGGGATATACCTTTCATTTCAGACATGGTTTCATTTTTACCTCTATTATGTATTACTATGCACCCCTTAGCTCTGGTGTTATTCAAACTTTTCTATAGTTGATAATCTTTATTGATTACTTTATTCTGAATTTCACAGATTTCCAACTATGAGAAGGAGCTGGGAGAGATGAAGAACATGACGAGGCAGGAGTTTGTTGCTTCTCTACGAAGGTAAAATTACTTATTTTTATTAAAATCCGAGCTAGGAGAATAGTTTTATGGACATGTTTAATTTATTTTGGCGCTCTCCATGTTACAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGGTATTTGTCTATCTTGTACTTTTAGGTTTTAACGTTTTGTGGCCTCATTTTCATTCCTTTTGACCGCTAGCGGATATCTATTGATTCTGAATGAATAAAATAATTTGATTCAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTGAGTCATCAATATCTTCCTTATATTCACATCAATTATTGTCTTTTTTCTTGCTTTCCATTCCTCTATACATGTCCTTTTTTGAAAAGGAAACAACTTCCTGATTTTTTGTACACATACACAAGATGCTGCTGCCAATGAGGTGTTTGTTAAACTACCCAAATGGCCAAATCTCTTGCCACTTGCCCAGTTTCATATTTATATATTTTTTTCAGTTTATGATTTGATACTAACAAAAAGGAGTAATTTTCTTAAAAAACTTAGGCACTCAAGAGGAAGCTGCCGAGGCCTATGACATTGCAGCTATAAAATTCAGGGGGTTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAGAGCATTGCAAACAGCACACTTCCCATTGGGGGTTTGTCTAGCAAGAACAAGACATCCGCGGATTCGGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCGGACGAACGAGATCCGTCATCAGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCACAATCCTACTCTCGACAACAGTGGGGTCAGGAACACTGCTAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAATACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAGCAAAGTGGTCATGGTCATGGAAATGGGAATGGTCATGGTCATGGAAATGGAAGCGGTGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACTCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCGATATTTGGCATGGAATGAGCTCATGCACGAGGTAGGATGAGAATCTGTGCATATAATGATGAAAGGGGAAGGAAAGTAGCGGTGATGGTGTTTTAGCATGCAACACAACGCAAGGACAAACGGACGAGTCTCTTTAGCTGATGCACCATTTGAATGAGTTGGACTGACAGTCATAATTCATCAGAACCGTAGCTAGACCTAGCTGACACTGTACTAACTCAAACTTCCTTTGTTGTGTTTTGTATCTTTTTTTTCTTTTACGCCTTTAGCTTTTTGTCCCTGTTAATATACTGACATGATTTCATGAGTATAATGGGAAGGAAATCCTTTTGTGT