Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07274 LG1 104097995 104098941 transcription factor bHLH35
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein dimerization activity, sequence-specific DNA binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/A 104098128 synonymous_variant p.Gly173Gly
T/C 104098245 missense_variant p.Asn159Ser
G/C 104098316 synonymous_variant p.Leu135Leu
G/T 104098378 missense_variant p.His115Asn
G/A 104098560 intron_variant
T/A 104098638 synonymous_variant p.Gly58Gly
G/T 104098670 missense_variant p.His48Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07274.1
MDNMGGEYNHFWDTFFQNQELDSWAMDEAAMSGYYDSSSPDGGASSMASKNIVSERNRRKKLNERLFALRAVVPNISKLASIGDRWQTRINLVVDGEFLQMDKASIIKDAIEYIEHLHEQEKRIEAEILDLESGKLKNPTYEFDHDLPILLRSKKKRTENSPIEVIELRVAYMGDKTFVVSLTCSKRIDTMEHF*


CDS Sequence:
>Vu_07274.1
ATGGACAATATGGGTGGGGAGTACAACCATTTCTGGGACACCTTCTTCCAAAACCAAGAGCTTGATAGCTGGGCAATGGATGAGGCGGCGATGTCCGGGTACTATGATTCAAGCTCTCCGGACGGTGGTGCTTCATCGATGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCCGTGGTCCCCAACATCAGTAAGCTAGCTAGTATAGGAGACAGGTGGCAGACACGTATTAATTTGGTTGTTGATGGCGAATTTTTACAGATGGACAAGGCTTCTATCATTAAGGATGCTATTGAATACATCGAGCACTTGCATGAGCAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTGGAATCTGGGAAGCTCAAGAACCCAACCTATGAATTTGATCACGACCTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACGGAAAATTCCCCAATTGAAGTAATCGAGCTGAGGGTTGCATACATGGGAGACAAGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGATAGACACAATGGAACACTTTTGA


Promoter Sequence:
>Vu_07274::LG1:104098941-104100941(-)
TATAGAAACTTGGAGATATGGTCGTAATATAATATAATAAAAGAGATATTTTTATAACAACTTAATATATATAAATAATTCATGTAAATAGTTGATACAAATGCATGTTAATTAACTACTTTATATATAATTTTTGTTTGTTTTGATCGATTATTTTTGTGTTCTTGTCCTTCCTAGACGCATTATGCTTTCTCTCTCACTAGAAACACTTTATTCCGACGAACCCACTTTTTGAAGGTTAGTTTTCGTTTTCGTTTTGAAGAACTTATTTGTTGAACTTGTTTGTTGTTATTTGGTTGAACTTGTTTGTTGTTGTTGTTTGATTAAAATTTTTTGTTGTTTGTTAGTGTTATTTGTTGTTGATACTATACTTCATAGTTTATGCTTTATAAAATATCAAAAACTGAAATTTATTATTTTTCTGCTTTTCATATCTAGTAGAGTTGTAAAAAAAGATTACAATTAATTAAAAAAACTTAATGATATTCGACCTGAAAGAGCAAAAGACAACAACATTATACGATATTTTTGTACTAGTGATTTGAGAAGACAACTTATAGATTTACTAAAATCTCACTATCTTTATGAATATGAATTTATTTTATTTAAATGATTCAAAATAAGATTTGTTTCGGATAAGATGTTGAGATTCCTTACTCAAAGCACTCCCAGTTGTTTTGAAGACTGGATGAGCTTCCTGAAGATCTTGCATTATCCAAATTGCATATCTTTCCCTTGTTCATGCCGTGGGAGCGGGTACCTGTCAAATGCACTCAAGTTAGTGGTTTATTCAGTAATTTTATAATAAGATTAAGTAATCAGAATTAATTACTTGTCTTTTTCGTCAAACATATAATAAATGACATTATTCTTATTAATTGTCAATCAATGACTATTATTCTCATTAGTTGTCCATTAGTAGTTATTATTGCTCAAATTAATTGTCATTATTGACTATTTCAAATCGGTCGATCATTCCCTTTATGGAGGGTCGACCGTCTAATCATTGGCTGACCGGTGGTCATAGAGTCCACAAGCTCAAACAAGCTTTTTATTGAAAAAAGTGCGCAAAAATTATTATGAGTTTAAGACAAGTTGTTCATGTTATACTGAAAAATTTATTTTTTTTAAACTTAACTGAATAAAATCATATTTTATTTTATTTTATTTTTGTTTGGAATAATAAAATAAAATGGTCATCATAATCTAATAAAAAAAATTTAAAGACTCAATACAACCATTTTTTTAATGAATAATCTATTCAAAATAGTAAAATTTATGAAAGATTTAAAATTAAATTGGTTTTTTTTTTGTATATGTGAAGACTCAATTAAAGACTTGATACTTAATAAAACACAATTTTTATAAAAAAATTAATTAAAAATACTTAAATTTACGAAAAAGTTAAAATTCAATTAAATTAATATTTTAAAATACAATATCTAATTAGTCCGAATCATGAATCTAAAACAAAATATATATTAAGAATAACTAATTTCACTTATTTAGATAACAAGAGAATGTACAAATTTAAAATTAAAAAAAAAATTGACTATATTTCCTCCCATTTGAAATATTAATAAACATATTTCCACATAAAATATAAAATGTAAACGCACGGGGATACGATACAGTGTGATGACGTAAGATCTGTGAAGAGTTTTCCTAATATAATAAATAATATATATTTTGTGGTTGAATCCATGATTAATTATTAATGTGAATAACGCGGCCTCAGAGACACACATTGTTTGACGGTCTCGGTCGCTGTTTCTGGGAAGCAGCTAACTAGGAAACAAACATTCTCATCTCCATCGCTTCCTCTCCTCTCCATATATATATATATATATATGTGTGTGTGTGTGTATATGTTGTATCCCACCCTGCACCCATCTAGCACAGAAAAACATTAGGTGAAAACACACCATAAAAAAAGGGAAAGAAAGAAAAGGATCAAAACCTTCCTCCTTCTGTCCGTTACAACCTCAAACTTTCCAACC


Gene Sequence:
>Vu_07274(-)
ATGGACAATATGGGTGGGGAGTACAACCATTTCTGGGACACCTTCTTCCAAAACCAAGAGCTTGATAGGTAAACACAACTCACAAGATTTTCCTTATTCTCCATAAAGCAGTTAATCAACCGTTCATCATGTTGGTATATATAAACATAAGGGATATTGAATTACTAATTAAAAGAATTTGGTGATTGGACATGCAGCTGGGCAATGGATGAGGCGGCGATGTCCGGGTACTATGATTCAAGCTCTCCGGACGGTGGTGCTTCATCGATGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCCGTGGTCCCCAACATCAGTAAGGTATATATGCTAACAGTGCTGACAAACCCCACCTATATAACTTAGTGTTGTTCATTTCGCTTTCAGAAAAAGTAATGAGCATCTAGCAGCTAGCTAGTATAGGAGACAGGTGGCAGACACGTATTAATTTGGTTGTTGATGGCGAATTTTTACAGATGGACAAGGCTTCTATCATTAAGGATGCTATTGAATACATCGAGCACTTGCATGAGCAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTGGAATCTGGGAAGCTCAAGAACCCAACCTATGAATTTGATCACGACCTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACGGAAAATTCCCCAATTGAAGTAATCGAGGTATAGCTCATCACTCTTTTCTGCATTTCATACTCACTCATGTGTTATAAACTCATTGAGATGGTGAATGGCAGCTGAGGGTTGCATACATGGGAGACAAGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGATAGACACAATGGTAAAACTGTGTGAGGTCTTCGAATCTTTAAAGCTGAAGATCATTGCAGCCAATATCACTTCTTTTTCAGGAACACTTTTGA