Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07287 LG1 104318380 104318925 agamous-like MADS-box protein AGL61
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, embryo sac central cell differentiation, regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, embryo sac central cell differentiation, regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus, nucleus, nucleus, polar nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein dimerization activity, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding
SNP Position Effect Amino acid change
G/A 104318472 missense_variant p.Arg152Cys
T/A 104318791 missense_variant p.Arg45Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07287.1
MDNPDFAVAMDRLKQPQKKKNTGRKKIVIKKIEKCSNKQVTFSKRRAGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDVEGIVGRYLKGEKVLVASERRGSYEESNMQYEEAVKNLALEKKNLIETEKMVKGLSRRWWEDPIDEMSERELEQFMVSLYELRKKLTERAAQLFMLSIQ*


CDS Sequence:
>Vu_07287.1
ATGGATAACCCTGATTTTGCCGTAGCCATGGATAGGTTAAAGCAGCCACAGAAGAAGAAAAACACAGGGAGGAAGAAGATTGTGATAAAGAAGATTGAGAAATGTAGCAACAAGCAAGTGACATTCTCGAAAAGAAGAGCAGGGTTGTTCAAAAAAGCGAGTGAACTGTGCATTCTGTGCAATGTTAACATAGCCATAATAGTGTTTTCTCCTGCTGAAAAGTTGTTCTGCTTTGGGCATCCAGACGTGGAAGGCATTGTTGGAAGGTACCTGAAGGGAGAGAAAGTGTTGGTAGCATCAGAGAGAAGAGGGTCATATGAAGAAAGCAACATGCAATACGAGGAGGCAGTGAAGAATTTGGCGTTGGAAAAGAAGAATCTGATAGAAACTGAAAAAATGGTTAAGGGTTTGAGCAGAAGGTGGTGGGAGGATCCCATTGATGAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTGTCGCTTTATGAGTTGAGGAAGAAATTAACAGAAAGGGCTGCTCAATTGTTCATGCTTTCAATTCAATGA


Promoter Sequence:
>Vu_07287::LG1:104318925-104320925(-)
GTCATTGTCTAGAAAATGAATTTTTGAAGTCAGTTCTTAAAAATAATTCTAAAAAACCATATTTTCGCTGAAAATAATATTTTGAAATATACTTTTTACCTTCTTGCATATAATCAACAAGAACAAGTTATTAAAAAAAGGTTATGAACAAAGAAAATTGTTGTTGTTGACTTTGTTTCCTTATTCAGAGTAGAGACCACTGCTCGTTCCCTTTTGAATGTTTCAGATAAGCATATTTTCATTTCATTTTTGTAAAAAGAATAAAAATATTCTAACAAATTGCACATCTTCTAGATTTGAGCAGATTACAGTATATTAAGTAGTTTCCAAGAAGAACTGCATTGATATACCAACTAATTAAAAATCAATCAAAAATTAGTAAACTAGTCATAATGAACCTGTTAGCTCTCAGTTAAACCTAAAAATTACTTTCCAAAGCAAATCACATCATGTAAGTTTATTTTAAACAATTCACATCTCCAAATTGTTTGGTCAATATAAACATGATGTCGTCATTCTAATTTATATTTATCGTAGAAGTAAAATTAAGAAAAACAAAACGCACTGAATTTTAAATTGGAATTTAAACTTAACAAATTTGTTACCATTACGCTCATAGTTTAACTTATACTCCTTTCATTTCTATGATTTTATCAAAATTAATATTAAGAAACTAAATGTTTTGCAACTATTATGGATATATGCTAACATCTTTTCGTGGGAGTTTCTTGTTTCTTCTTTTAGTTTTGAAATTATTGAAATTATTATAGATTTTAATTTTTTACAAATTCAATAACAATCAGAAGGAACAAGATATAACACAATTCTTCAATCAAAAATCAACATCATCAATTATTTTGTTATTAAGGTGAAAAACAAATGAACGAACATATAAAGAGCAACAAACTGCAGTGTCGTAGGTTGCTGTGGGTGAGAGAGAGGATGGAGATAAGAGAGAAACAAATTAGATAAGTGATGAATGTGGATTAGGATTAGGTGAGTGTTTCTGATTTTTTCAATTGGAAAAAAAGAAAAGGTTTGAGTGAGAGAGATGAAAGAGAAAATGTTGAAAGGAATGAGGGATGAAAGAGATGAGTAAGGATTTGGGGGTTTCTTAGTTTTTTTTTTTAATTTTGAGAATGAAAATTAATAATATTTTTATTCACTGAAACTTGATACACTCTACTTTTGATACACTCTGCTAAAACAAAACGTACCTAACTAAAACAAAAAGTCTTACTTATCTTAGCAAACCCCTGTATGTGAAATGTATATTGTAAAAAATAATCATATATAATTGAGAGAATCTTACTCATTAAATTGTATATTCTGATTTGTAATACAAGAATAAATCGATAGGCAAATGATTGGTGCTTGGACCTCGAATTACAGGAGCCTTAAATATGTCCATTATTATTTTAAAAAATATTTGTGGTTGACTTGAGTTATCTATATTATATTTTATTTTTACTGCTTTAATTTTAACAGCGTATAAGTATTATCGTATAATGTTATCTTATTACCTTTTTTAAAATAAAAAAATATTTAAACACAGTCTTATATATTTATGCATATACATGCGCCGCGTATGAAAAGGAGAAGAAAACGGAATCAGAACTTGTTTTCCATAAATACGAATATATTTTCTTCCAAAATAAAACCTCAAGTTGATTTGTCAATTTACCTTTCATTACTTGAATTATGTTGAAAATTGGAACGAAGGATCTATAATTTTGTTTTTCATTTTGAGGGAAAATATATACATACATTATTACGTAATTGAATTATAAGCTGAGACATACGTAATTGTAGGATTTTATTAGGAGAATAAATCAATGATGAATATTCAATTATTGTAATTAGAAATATTTGCAAATAGATAATCTAAGAGAAGGCGTAAAAGTAGGATTTGTGGGCAATAAGGAATGATGAATATAAATATACATAAGCATAAATGATTTGATGAGAGGTAAATGGAAAAACATATTGTTCCTGTAACC


Gene Sequence:
>Vu_07287(-)
ATGGATAACCCTGATTTTGCCGTAGCCATGGATAGGTTAAAGCAGCCACAGAAGAAGAAAAACACAGGGAGGAAGAAGATTGTGATAAAGAAGATTGAGAAATGTAGCAACAAGCAAGTGACATTCTCGAAAAGAAGAGCAGGGTTGTTCAAAAAAGCGAGTGAACTGTGCATTCTGTGCAATGTTAACATAGCCATAATAGTGTTTTCTCCTGCTGAAAAGTTGTTCTGCTTTGGGCATCCAGACGTGGAAGGCATTGTTGGAAGGTACCTGAAGGGAGAGAAAGTGTTGGTAGCATCAGAGAGAAGAGGGTCATATGAAGAAAGCAACATGCAATACGAGGAGGCAGTGAAGAATTTGGCGTTGGAAAAGAAGAATCTGATAGAAACTGAAAAAATGGTTAAGGGTTTGAGCAGAAGGTGGTGGGAGGATCCCATTGATGAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTGTCGCTTTATGAGTTGAGGAAGAAATTAACAGAAAGGGCTGCTCAATTGTTCATGCTTTCAATTCAATGA