Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07359 LG1 104991717 104993104 PREDICTED: transcription factor TT2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cinnamic acid biosynthetic process, cinnamic acid biosynthetic process, response to wounding, cinnamic acid biosynthetic process, cinnamic acid biosynthetic process, negative regulation of metabolic process
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 104991885 missense_variant p.Ile57Val
G/T 104991999 missense_variant p.Gly95Cys
G/C 104992114 downstream_gene_variant
G/A 104992196 downstream_gene_variant
G/T 104992418 downstream_gene_variant
G/A 104992422 downstream_gene_variant
A/G 104992613 synonymous_variant p.Thr161Thr
T/G 104992776 stop_lost p.Ter216Glyext*?
A/G 104992802 synonymous_variant p.Pro224Pro
C/G 104992903 missense_variant p.Ser258Trp
A/C 104993043 missense_variant p.Thr305Pro
A/C 104993045 synonymous_variant p.Thr305Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07359.1
MGRSPCCSKEGLNRGAWTAHEDKILREYITVHGEGRWRNLPKTAGSFLLPYTYNNTIPSSLSKTPNTYMQPGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHKTSSTFCRRPSNENSTRNPMPHLANPKPDSHLVRTKATKCTKVFFPHPSMLQLPNKSEEEEKVVADAVMSVQMELTTNNNGFLSFPDEEKQLSADMLTDFNVGDICFSDLLDSDFNNICNDQHLFSPCSDQPFHLVCSQELLNNCTQTNFADQNSASNNLHSFISFLDTTEETLGKS*


CDS Sequence:
>Vu_07359.1
ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCCGAGAATACATTACAGTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAACAGCAGGTTCCTTTCTTTTACCTTATACTTACAACAACACAATTCCTTCTTCTCTTTCTAAAACACCAAATACTTACATGCAACCAGGTTTGAAAAGGTGTGGCAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGCGAGGCAATATAACCTCTGATGAAGAAGAACTCATTATCAGACTCCACAACCTCCTCGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTTAAAGACGGTCACAAAACCTCATCAACCTTTTGTCGCAGACCAAGCAATGAAAACAGCACACGGAATCCAATGCCCCACTTGGCCAATCCTAAACCAGATTCCCACCTGGTCCGTACAAAAGCCACCAAGTGCACTAAGGTGTTTTTCCCTCACCCATCAATGCTGCAACTTCCCAACAAGTCCGAGGAAGAAGAAAAGGTTGTTGCGGATGCTGTGATGAGTGTCCAGATGGAACTCACTACCAACAACAATGGCTTCTTGTCGTTTCCCGATGAAGAAAAACAGCTCTCGGCAGACATGCTCACAGATTTCAACGTGGGGGATATCTGCTTCTCTGATCTTCTCGACTCCGATTTCAACAATATCTGCAACGACCAGCACTTATTCTCTCCTTGTTCGGACCAACCTTTTCATCTAGTCTGCTCCCAAGAACTTCTCAACAACTGCACGCAAACCAATTTTGCAGACCAAAACAGTGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGACACCACCGAGGAAACACTGGGAAAATCATAA


Promoter Sequence:
>Vu_07359::LG1:104989717-104991717(+)
TTGGACCTGAGACATTTTACGCCTTATTACAAAAAATCAAATATAAAAAAAAGAATCTTGTGTTTGTTTTAGATGGTTCAGGTTTGAATTATTTTTTATTTGTATTGTTATACACGTACTAAAACAAATTAACGTCTATGCTAGTATAAATCGTATAGTTGACATATATATATATTTTATTTTATTTTATTTATTACAACTTCGAATAGTACGATTTGAAGATAATACTTCTTTAAATGTACAAACAACATTTAATGTCACTTATTATATTCGTACAAGTGAGATGGATTTAATACATTTAACTAAACGTTAATTGAATCCAACCAAAATTATTAAATAAGGTTAATGTTAACAATGGTAATATAATTATTATCTAATTTACTTTATTATTTTTATAACTAAATTTATATTTATGATATATTAAATCATTTAATTCTTCACATATTATATATATTTAAAAAAAAAGTAACAAAAAGTTATTTTGGTATTAAAATTCTGGTCAAAAGATTCAAAATCTGTGAACAGTTACCTCAATTCAATCCAATCCGATTAAAGATAAACGAAGATCGACTGATCTTATAAAAAAAAATGATAATTTTAACTCATTCGAATTCATTTTTTTTATTGAATTTGTTTAAATCCAAAACAAATAGTAAATAACACATTTATATTTTCCTCTCATTCTAAAACAGTTTACACCATAAGTTGGTTAAGTTTTAGGATGATTATTAGCAATAAATTTGATTTATTAAGAATATAAAAAATATTGGTCTGAGAAATTCCTGGAGCTGACTGCTGCAACAAACATTCCAAGACGAAGAGGTTCGTGAGAAAGTCAGTTTGAGAGACCTAATTTAGGTAACAAAAATATCTAACAACACATTACTTTGAATAATTTTTGCTTTTCTCTTAATGATAGAGAGATTAAGTAGTTGGATAGATGTTCCATTTTTGTGAGTCGAAAGAATCTCGGCTACAAACTTAATCAAAAGCAGAGAAAACTGCAGATTTCTCCAGAAAATTAATCAGAGTAATGCAAGGAACATAGATTGTATGATACATCATAAATGAGGGAATTAAATCAACCTCACGTGCACGTTAGTCAAAACAACGCCTGCTTCTTTAAACTGAAGGTCTACAAACAGTATATATCTGAACTCCAATATATCTTGTTTGTGAAGTATTACATTCACTATTTCCATTATTATACTGCTTAATATTTCATCATTAATTCTGGGATATTTTTTTATACGTATTTGAACTATTAGACTTATTCGCATGACAAAAGTCCTATTTTTTTTTTACCTAAAATAGGATTTCTCACCTGAGAAAAACCGTATTAGAGTTGAAGCCAATTAATACCAGTAGTTATATATGCTTCAAAAAAAGATCAATAATTAAGGAACAATAAACTCTTTATAAATAAAGCAATTTCTAATACTCTCAGAATAACAAAGGAAAATGTATTTGAATTGACCATTAGAAAATAGAGATGAATAAAAAAAACAAAAATAATGTGCTTACACATAAAAACTATGAACCTTTTATATAACTTATATCAGTTATTTTTTGAAGTTTTAATATTTTAATTTGGCCTTCATAAAATTAAAATATTGTTTATAGTATTTTAAGAGTAAACCTTTCATAAAATACATGTTATTAATCATAATTTAATGAATTAAATCATTTTAGAAACGCATATTATAATTTTGTGATGAGTTTCTGAAAAGAGTAGCAGAGAGGCGCAATGAATGATTTGAAGGAATGATTTGGTCGAAAAATCTAAGATTGGTCCGTTGTGTGAAGAGAAATGAGATGAAATGAAGATATGCAACGTGAATGACGTGTAATGAATCTTCTGTGAGTTGCAAGAGTCGGATCATATATAAGTTGGACCACACTAAAAGAATTGCTGTATAAGTATCCATATATACTGTCAAACAGTTTCAAAGTTAGCTAGCTAGCAGAGAACCACAGAGAAAAAGAGAGAGAAAGAAAAA


Gene Sequence:
>Vu_07359(+)
ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCCGAGAATACATTACAGTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAACAGCAGGTTCCTTTCTTTTACCTTATACTTACAACAACACAATTCCTTCTTCTCTTTCTAAAACACCAAATACTTACATGCAACCAGGTTTGAAAAGGTGTGGCAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGCGAGGCAATATAACCTCTGATGAAGAAGAACTCATTATCAGACTCCACAACCTCCTCGGAAACAGGTCTCCATTTTCCTATCTTCATTTATTACTTTAATTTCTTCCCTCTTACCATAGTAACGTTAGCTCCATCTCTTACCTACATTAATAAATTTAAATTACTCCAAATTATATTCATTTTTTTTTGTACTAATTTTCGATGTGTTTTACTAAGACAATAGAGTTGTAAAGAAAATATAGAGAAATTTATAGGAAAATGGTTGGAGAAGTACAACATTACCGGTCTTCGATGACACTAAAAATGTTGATGATGAGAGATAAAGTAATAGTTAATGATGAGATAAAAAGTTAAATGTGTAGAAGGTGATGACCACTGAAACGGTTCGTTTTACCGTGTTACATATGAGAGGGATTGAAGAGGAATGTGTTGGACATAAATAGTAAGATGTTAATTGAATGTGTTACTTTGTGTGTAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTTAAAGACGGTCACAAAACCTCATCAACCTTTTGTCGCAGACCAAGCAATGAAAACAGCACACGGAATCCAATGCCCCACTTGGCCAATCCTAAACCAGATTCCCACCTGGTCCGTACAAAAGCCACCAAGTGCACTAAGGTGTTTTTCCCTCACCCATCAATGCTGCAACTTCCCAACAAGTCCGAGGAAGAAGAAAAGGTTGTTGCGGATGCTGTGATGAGTGTCCAGATGGAACTCACTACCAACAACAATGGCTTCTTGTCGTTTCCCGATGAAGAAAAACAGCTCTCGGCAGACATGCTCACAGATTTCAACGTGGGGGATATCTGCTTCTCTGATCTTCTCGACTCCGATTTCAACAATATCTGCAACGACCAGCACTTATTCTCTCCTTGTTCGGACCAACCTTTTCATCTAGTCTGCTCCCAAGAACTTCTCAACAACTGCACGCAAACCAATTTTGCAGACCAAAACAGTGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGACACCACCGAGGAAACACTGGGAAAATCATAA