Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07639 LG1 107648245 107648640 PREDICTED: nuclear transcription factor Y subunit B-5-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein heterodimerization activity, DNA-binding transcription activator activity, RNA polymerase II-specific, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
G/A 107648248 synonymous_variant p.Phe131Phe
C/A 107648253 stop_gained p.Glu130*
A/G 107648254 synonymous_variant p.Ala129Ala
T/A 107648277 missense_variant p.Ser122Cys
G/A 107648297 missense_variant p.Ala115Val
C/G 107648303 missense_variant p.Arg113Thr
C/T 107648307 missense_variant p.Asp112Asn
C/A 107648313 stop_gained p.Glu110*
C/T 107648321 missense_variant p.Arg107Lys
A/C 107648323 stop_gained p.Tyr106*
G/A 107648329 synonymous_variant p.His104His
G/A 107648349 missense_variant p.Pro98Ser
C/A 107648370 missense_variant p.Gly91Cys
G/A 107648375 missense_variant p.Ser89Phe
G/C 107648377 synonymous_variant p.Gly88Gly
C/T 107648379 missense_variant p.Gly88Ser
C/G 107648397 missense_variant p.Asp82His
G/A 107648410 synonymous_variant p.Thr77Thr
G/A 107648411 missense_variant p.Thr77Ile
C/T 107648413 synonymous_variant p.Lys76Lys
T/C 107648416 synonymous_variant p.Arg75Arg
C/A 107648429 missense_variant p.Arg71Ile
T/A 107648430 stop_gained p.Arg71*
C/T 107648439 missense_variant p.Glu68Lys
C/T 107648446 synonymous_variant p.Glu65Glu
C/T 107648448 missense_variant p.Glu65Lys
C/G 107648452 synonymous_variant p.Thr63Thr
C/T 107648457 missense_variant p.Val62Met
A/G 107648458 synonymous_variant p.Phe61Phe
C/T 107648473 synonymous_variant p.Ser56Ser
A/G 107648489 missense_variant p.Met51Thr
G/C 107648492 missense_variant p.Thr50Arg
G/T 107648501 stop_gained p.Ser47*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07639.1
MVDNVGGSSSNPENSGMREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYADPLRRYLHRYRELEVDRSANQERGNSPSKDKDAEF*


CDS Sequence:
>Vu_07639.1
ATGGTGGACAATGTCGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATGAGGGAACAAGACCGTCTGTTGCCAATAGCCAATGTTGGAAGGATCATGAAGCAGATTCTGCCTCCTAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCGGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGAAAGGAGAGGAGAAAGACCGTGAACGGAGATGATATATGCTGGGCCTTAGGCTCCCTTGGTTTTGATGACTATGCAGACCCATTGAGAAGGTATTTGCACAGATATAGAGAACTAGAAGTAGATAGATCAGCCAACCAAGAGAGAGGAAATAGCCCCTCCAAAGACAAGGATGCTGAATTCTGA


Promoter Sequence:
>Vu_07639::LG1:107648640-107650640(-)
CATCTCCATGTATGCAGCGGCAACTCTTCTTCCTCTTTATCGTTCGTTCCCTCATTGTTTCATTGTGCTCTTCTTCCTTTTTTTCACGTTCCACTTCTTCCTCTCATTCTTTAATTGTGATAGAATTGTGGTCTTAGAGTGTGGTGGACTTTCATTAGTTGATGTGTTTAGTGAGAGATTGCAAGTGGTGGTGGAAGCAATTGATCAGCCGTGCCAAGATCGGTGTGTGGTGGTGGTGTGGTGGTGCTCGAAGGATTCGTCGTGAAGGTGCGTAATAAACCCTAAAAAAATAAACATATAATATTTAAACGGATGTGAGCATCCCTCAGCGGATGTCAACATCCGTTTAAGGGAAAACGAATGTCGATATCCGTTTTGCCTTAAATGGATGTTGACATTCGTTGACGGATGCTCACATCCATTTAAGTTACATGTTATTTTCCAGTTTATTTTTATTAGTTTATTTTTTTTATATTTATTTTGGAGATATTTTAATAATGTAATTTATATGTTTTGATGTATTATTTTTGAATATATTTTTGATGTATTTTAATAATGTATTTTTGAAGATCTTTATTGTTATTAGTTTATATTTATATTTTTTTGTATTTTGCAGTTATATATAATTAGTTTTTTGTTTTAATGTGTTTATATAATATATATTTTTTATATATGATATTTGTATTCTTTAACAATTTTATAATTATATAAAAAATTATTTATTATTTTAATTATATGAAATATATAATTTTATTATATTAATATTTTTGTAATTAAAACAAAGGGATGTGGTGGAGTTGGGGGGTGGGAAGAGAGAGAAGGTGAGTTGGGAGGTGGGATTGAGTGAAAAGTAAAAATAGGTAGAAAGATAGAGTTTGAGTTTAAAGTAAATAAATAGGGTTAAAAGTAAAAAAAGATATTTTTATAATTAATTTTTTTTTGGAGAAGGTTGGGGAGGTGGAGGGAGAAGTGGTGGTGGTGGAGGGAGCAACACCCTTAATGTAAATGGTAATTAGAGGTAATTGGGCTCAGATGAGCCGAAGTTAAGATTTCACTAATCTCAAACTCATGCCAAAAACTATAAATATATGTAAAATGTAGGAGGTAGGTAATCGCATTTACTATGCATTTATTAACATTACACCAAACTCTTGTACAAACAGTTTACTGACTTTAGTATTGGAGAACCTTTGACATGTATATCTCCGAACGGTGGAGTGAAGACGAAGACTTAAATTAGTTAACGGAAGGCATGTTAAGAAAAATGGTATAGATATTTGAAGTAACTTAACGTCGTATCCAAAACAAACAAAAAAAAAAACTAAAAAGAAAAAAGCATGAATTGAAATACATCTCGACCAATTCAACTAGTTGAAATAATAAAACTTGTATAGAAAAGAAAAATTGTAGCAAGAGGAATCAAATAAGCTGTTATTATTATTATTTTACCTCAAAAAAGAAAAAGTGCGTAATATTATAACTCATACGTTGAAGAATATTGGGTGAATCATGATTCATGATCTTTGTTGTACCATAGAGATGAATAAATTAGTTGTAGCTTAGGGCTTTCGAACGGATAGTGAGAGTGATCTTCACTCTTTTGAACTGCCTGAAAAGCCTCCTCAGCATCCATTAGCAGTGACGAAGCCAATGAAATGGATGGATCCATTGGGTGGACTTTGTCTAAACTTTGCAACAAAAAATGACTCTGAACTCCAATTCATTTAATCAGTGTTGCGGCATCAGACCCCACAATCTTAGCCGACCGCCTTGGCATCATTCGCATGTCACCTTGAATTAACTAACTCACAACATTAATGTTCATGTGTCACTGTGACTGGGCTTCCTTGCATGTGCACTTATCTTTATTTTTTTTCTTTAGTCACATGTTTTCAATCGAAGAATAATCACTTTATATATATATATATATACACACACTCACAAAGCCTTGACATGTTGTCTGTTGGAGTTGAATTCCTTCCTCTTGCTTCCTTCCAAAG


Gene Sequence:
>Vu_07639(-)
ATGGTGGACAATGTCGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATGAGGGAACAAGACCGTCTGTTGCCAATAGCCAATGTTGGAAGGATCATGAAGCAGATTCTGCCTCCTAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCGGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGAAAGGAGAGGAGAAAGACCGTGAACGGAGATGATATATGCTGGGCCTTAGGCTCCCTTGGTTTTGATGACTATGCAGACCCATTGAGAAGGTATTTGCACAGATATAGAGAACTAGAAGTAGATAGATCAGCCAACCAAGAGAGAGGAAATAGCCCCTCCAAAGACAAGGATGCTGAATTCTGA