Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_07749	LG1	108590304	108592537	PREDICTED: NAC domain-containing protein 35	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, response to light stimulus, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to salicylic acid, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to wounding, regulation of transcription, DNA-templated, developmental growth, plastid organization
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/A	108590805	missense_variant	p.Gln181His
A/T	108590836	stop_gained	p.Leu171*
G/A	108590859	synonymous_variant	p.Ser163Ser
G/T	108590886	synonymous_variant	p.Pro154Pro
C/T	108591051	upstream_gene_variant
C/T	108591052	upstream_gene_variant
A/T	108591446	intron_variant
T/C	108591462	intron_variant
G/T,*	108591558	intron_variant
A/G	108591908	intron_variant
A/G	108591925	intron_variant
A/G	108592100	intron_variant
A/G	108592102	intron_variant
A/G	108592104	intron_variant
G/A	108592106	intron_variant
A/G	108592233	intron_variant
G/A	108592376	synonymous_variant	p.Pro54Pro
G/T	108592420	missense_variant	p.His40Asn
A/T	108592516	missense_variant	p.Ser8Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_07749.1

MAIAAANSSPTMSLSQSQSQEDVTTASTTNDNTNSNNNNHDNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPEILPSETIARFGAMAHQNAIAARNLQPLMAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSETKKHNELVHHNMGFVGQSKPTEHIVDKMNETEASSDVNTALGLSKYNAYRAAMGALSSTMALPVVPMDEEGLMMMQHQQQSKQAAAHAGAPGIGTIFSAGPSSSNNNGVVNMDDLNRLVSYQQQFYNVQSHPNQFSTLLMQPSPVVSLSSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK*

CDS Sequence:
>Vu_07749.1

Promoter Sequence:
>Vu_07749::LG1:108592537-108594537(-)

ATGTTTTGTTTTCTTCAAAACTGAAACATGTAACCTGAGGCAAAATCTGTACGGATATACGATAATTTTAACATGATATTTCTACTAGGCAACATAGTATATGTAATGTGTAATGAGATGAATAAAACAAATGTATCATTTATTTTTTACTTGTAAGGTTGTAACTAAAGTGTAAAACAGGTGTGATAGATGCAACATAGTGGACAAACTTAGTGCAACATAGCGAAACTGTAAATCACTTTATATAATTTATTAGTTTAGAGCTAAGTAATAAAAGTAACATCATTTAGAAGTTTTTGTGGATATCAATGAGTTGTAGTATTTGGAATATAAAAACATAATTATCTTTAAGAATGTTATAGCAAATGTAAACAGAATATTTTGTTTGACACATGTTAACGATTGGGTCTAATTGGCACATAAATTCAATAAGACTCATCTTTCATACCATAAATAGTATCTCTGTCCCCTCATATGTATATGATCAACAAGGTAGTAACAAAGTTGACAATTTTGGGTGAAAAGAGGCAGTAATGCTAGGGAAGGATGAAATGATATGTATATATTGTGAGTATTCTTTACTGGTATTAAATATTATTTTGCAATTTTGTATATAAAGTTATTAGGACACCTTAAGTGTTCTACTTTATTTTTATTGTTTTGCAATTTTTGGTAATTGTTATTTTACAGTTTTTTGTTGATTCTGATTTCTTTTAAATATTTATCCTAAAAACCGAAAGCCATTATAGAAATTAATGTTGAGGTGGGTTTGTAAATAATGACAGTATCGAACTGATAATCCATAACGGGTTGTAATTAGACGATAGTATAAAAGTGTTTTTATAACAGGAGCTGACATAATAACTTTATTAGTAGTTATTAATCAGTTAACTTCCATATATAATTAATCCTTATGGAAGACGAAGTCGAAGGCTGGATGACATTTTCATCGTATTATAATTGATGAGACTTACAAGATTCATGTGGTGCACGTGAACTGCCAACGTACGGGCGGGAAAAGAACCAATCAACCCAATAACCAAACCACAACAATTCAACTTACTCAAGAACTTGCATGGAACATATCCCACCACTCTAACAACCCAACCATTTTAATTTTCTTTCTTCACATAAAAAACACACTTCTTAATACATAATTCATCGTTACTTCTTTATATAGTATTATTCTTAGATTAAAAAAAAAAGGTATACTGAATGTAAAGTTTTAGTTAAAAACAGTTGAAGTTTAGAGCTAAAATGTATAATCTAAGGGAAAGAGACAGAAAAGAGGAAAGAGAGAAGAGCACACGAGTGTTTCCTTTTGTCTTAAAAAAATTAGATATACATGTGGGGGTAAAAGAAAGAGAGAGAGAGAGAGGTGAGAGAAAGTTAAAATAATTATAATAATAATATATTTTGGTGAAGGTAGAAAAAAAAATGGAAAATGGAAGGTTATAAAATAAAAAAGAATTTAGTTTGGAAACATATTTGTGTAGTGTTGTTGTGTTGTGTAGGAGATGGAAGAAAGGTCCAAGGGCACCGCTTTGGGGCTGTAGACACCCTGTCTTCTTTTTGAAAAGTCATTTTCTCATCTTAAAAACACCTTAGCGTATGCCCTCTTCCCATGTAGGCCCTCCTTGAAAGCTATGTAGATGTTTCTTTTAACTCTTCTCTTTTTTTTTTCTTTTTTTTTTTCAATTTAATAAATTGCATTTTCTAGAGAGAGAAGAGAAAAGACAATATTTTTGAAATGTAAAAAAAAAAAAGAAATATTTTTGAAAAGTGACTTACTTGCATATACATATATACATATACATAGTAGTGGTAGTGATGTTAACCATCAATCTCTTATCTTTGCCTAACACTGGTGTACCACCAAATTCGTACAAATATTACTTGTGTGAGTATAAAGAGGTGAGGCCAAAGGAAAGTGTCTGTCTGAGTCTGAGTCTGAGATTAACTACTTGTTAGTTACTTACTTTACATAGACATAAGAGTGA

Gene Sequence:

>Vu_07749(-)

ATGGCAATTGCAGCCGCAAACTCATCGCCCACCATGAGTCTCAGCCAGAGCCAGAGCCAGGAGGACGTCACCACCGCCTCCACCACCAACGACAACACCAACAGTAACAACAACAACCACGATAACAAGCCCGACGATCACGAGCATGACATGGTTATGCCCGGTTTTCGCTTCCATCCAACTGAAGAAGAGCTCGTCGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAACTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGGTATATATATACACACACACACTCACTTACGCATATATTAAAGTTTCGCTTCCCTTTTCCTCAAGCAATTCTGGGAACTAACTCCCCCTTTTTTCTGCCATCTCCCACTAATTATATATATATACATACACACACACATATATATATATATATATGTATATATCATTCCTTTTTCCTAGACGGCTAGCTTTTCCCGCTTCTTATATATATGGATGATTACCGCACATACATATATATCTCGTGTGCAATTTTGTTTTCATGCTGGTTATTTAATTGAATTCGGATGTGTGTTGTGTTCATGGATCCTCCGATTTTGATGAAGTAAGTGTGTGTGTGTGTGTGTGATGAACAGCGTTGGCGGCTATTGGGGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGAAACGGTGATCGTCCCAATCGTGTCACCACCTCTGGGTATTGGAAGGCGACGGGAGCTGATAGGATGATCCGAACGGAGAATTTTCGGTCAATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATACGAACTAGTTGGATTATGAACGAGTATCGGTTGCCGCAACACGAAACCGAACGATATCAAAAGGTACCACATACCTCACACCTCGTACGTTTGTATTTGCAATAATCGATCCACTTGCTGCTTCTCCTTCTTCTTTCGTGATATGTGTAGGAAAACCCGCCGGTTCTTAGTTTTGGTTTTATAATTATTCAACCCTAGTTTGTTTTAAACCTAAAGTAGTTCATCTTGGTTTTGGGTTTGAGATCGTTTTCGTTGGCTAGACTTTATCTGGTGTTGCTAGAGATTCTTCCTTCCGAAACCATAGCTAGATTCGGAGCTATGGCACACCAAAATGCTATAGCTGCGCGAAACTTGCAGCCACTCATGGTCTAAAGTCAAGATACTCGACCAAGATCGAGAAGCCGAGAGGTGAACAATTAATGAATACGTGATAGAAGGAGGGATTGGAAATTTAAAATAAAAGTGTTGGCAGAAAATCAAAACAACCAGCACCGTTTGTCATTAATTCACTTTCTTTATCCTCTTCTCTCTCGCACACATTTATGACTGCATGCATGAATTTTGAAGTCTTATCATAAATTCAATTCGTGCCTCCCTCCGTACCGGTACAAAGTTTTTCTCAAACTTTGTCCGGTCATTTCTTTTCATCAAAATCTCTTCACGGAATGCTTAATTAATTCTCGAATATTGAAATGATTTTTGTTTCTATTTCCAGGCTGAGATATCGCTTTGCCGCGTGTACAAGAGAGCTGGAGTAGAGGATCATCCCTCCCTCCCTCGCTGTCTCCCAACAAGGCCCTCTTCATCAAGAGCTTCTTCGCACTCCGAAACCAAGAAGCACAACGAGTTGGTTCATCACAACATGGGATTTGTGGGACAATCGAAGCCAACCGAACACATAGTTGACAAAATGAATGAAACGGAAGCAAGCAGTGATGTCAACACGGCTCTTGGACTTTCGAAATACAATGCTTACCGTGCTGCGATGGGTGCACTCAGCAGCACAATGGCACTTCCGGTTGTTCCGATGGACGAGGAAGGGCTGATGATGATGCAGCATCAGCAGCAGTCTAAGCAAGCGGCAGCACACGCAGGTGCTCCTGGGATTGGCACAATCTTCTCTGCTGGACCTTCTAGTTCCAATAACAATGGAGTGGTGAACATGGATGATCTGAATAGGCTAGTGAGTTACCAGCAGCAGTTCTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTCTGCTGATGCAACCATCACCAGTAGTGTCTCTCAGCTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCAGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA