Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08057 LG2 2523402 2525971 PREDICTED: ethylene-responsive transcription factor RAP2-12-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, response to hypoxia, detection of hypoxia, regulation of transcription, DNA-templated, detection of hypoxia, detection of hypoxia, ethylene-activated signaling pathway, response to hypoxia, regulation of root development, regulation of root development, ethylene-activated signaling pathway, ethylene-activated signaling pathway, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, plasma membrane, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, DNA binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 2523525 3_prime_UTR_variant
A/G 2523646 3_prime_UTR_variant
A/G 2523771 3_prime_UTR_variant
T/A 2523796 3_prime_UTR_variant
G/A 2523822 3_prime_UTR_variant
G/A 2523995 3_prime_UTR_variant
G/A 2524026 3_prime_UTR_variant
G/C 2524031 3_prime_UTR_variant
T/G 2524037 3_prime_UTR_variant
T/A 2524041 3_prime_UTR_variant
G/T 2524058 3_prime_UTR_variant
G/T 2524168 synonymous_variant p.Ser329Ser
C/A 2524347 missense_variant p.Asp270Tyr
G/T 2524387 synonymous_variant p.Pro256Pro
G/A 2524507 synonymous_variant p.Pro216Pro
G/T 2524544 missense_variant p.Pro204His
G/T 2524560 missense_variant p.Leu199Met
A/G 2524579 synonymous_variant p.Asp192Asp
G/T 2524598 missense_variant p.Ala186Asp
T/A 2524622 missense_variant p.Gln178Leu
C/T 2524626 missense_variant p.Val177Ile
C/T 2524633 synonymous_variant p.Arg174Arg
A/G 2524667 missense_variant p.Val163Ala
A/G 2524672 synonymous_variant p.Ala161Ala
T/A 2524720 synonymous_variant p.Ala145Ala
A/G 2524729 synonymous_variant p.Asp142Asp
C/A 2524823 missense_variant p.Gly111Val
A/T 2524951 upstream_gene_variant
T/C 2524984 upstream_gene_variant
A/G 2525011 upstream_gene_variant
A/G 2525039 upstream_gene_variant
G/T 2525060 upstream_gene_variant
T/C 2525061 upstream_gene_variant
A/G 2525147 upstream_gene_variant
G/T 2525289 upstream_gene_variant
A/T 2525415 upstream_gene_variant
C/T 2525423 upstream_gene_variant
C/A 2525427 upstream_gene_variant
C/T 2525432 upstream_gene_variant
A/C 2525477 upstream_gene_variant
T/A 2525484 upstream_gene_variant
G/C 2525528 upstream_gene_variant
C/T 2525540 upstream_gene_variant
A/G 2525601 upstream_gene_variant
T/C 2525738 missense_variant p.Asp42Gly
G/T 2525745 missense_variant p.His40Asn
A/T 2525758 synonymous_variant p.Thr35Thr
G/C 2525776 synonymous_variant p.Ser29Ser
T/C 2525932 5_prime_UTR_variant
T/A 2525938 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08057.1
MCGGAIISDFIPAAVTARSRRITAGHLWSDLKKRTSEVIHSDDDFEADFRDFKDDSDIETDVDADHQVKPFAFSASSQRAVKSVAFNGGAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEASVKRSKLNPLGNRKIVQPNVHKFNAGNNQNDLRWPMDLVEQKPLVNQFADMGSFPGSGNGLRSLPSTDNVTLYFSSDQGSNSFDCADLGWSEKAPKTPEISSMLSAPLDCDSHFAKDATHQTNSQDVVSMQDDSSKTLSEELVDIESELKFFQMPYLEGSWDDTSLESLLSCDTTQDGGNLMNLWSFDDIASMAGGVF*


CDS Sequence:
>Vu_08057.1
ATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCAGTCACTGCCAGGTCTCGCCGGATCACCGCCGGTCATCTGTGGTCCGATTTGAAGAAACGGACTTCTGAGGTCATCCACTCGGACGATGACTTCGAGGCTGATTTTAGGGATTTCAAGGACGATTCCGACATCGAAACCGACGTCGACGCCGACCACCAAGTCAAACCCTTTGCTTTCTCCGCCTCTTCTCAGCGGGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAAAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCTAAATTAAATCCACTGGGAAATCGGAAGATTGTTCAGCCCAATGTTCACAAGTTCAATGCTGGGAACAATCAGAACGATCTTCGTTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTTTGCTGACATGGGTTCCTTCCCCGGCAGTGGAAATGGGCTCAGATCTCTGCCTTCGACTGATAATGTGACCCTTTACTTCAGTTCAGATCAGGGGAGTAACTCATTTGATTGTGCAGATCTTGGGTGGAGTGAAAAGGCTCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGCGATTCTCATTTTGCAAAGGATGCCACCCATCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTTCCAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAATTGAAGTTTTTTCAGATGCCTTATCTTGAAGGGAGCTGGGACGATACTTCATTGGAATCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTGCTTCCATGGCTGGCGGAGTTTTCTGA


Promoter Sequence:
>Vu_08057::LG2:2525971-2527971(-)
GTAAAGAAATTTGATTTGTTATCCACTGTTCTTTGCTTCAACCTGCTTGAACTCCCTACCATTCATTTTGAAATGTGACCATTGAGATCGATAGCCAAAACACTTTGAACTTCGTGCTTGCTAGTTAGTTGTAAGGAGATATGAAACATTAGGTCGTTTGGACTATCAGATTGTATATGACAGTTGTGGCTTCATGACAGTTGGGCTATCCATTTTTATAAATAAAGATGAAGTTGGCCTGTCATTTTCACTTTTTCTCATATAGGTCTTCCTTTATTGTTCGCTTTCTGCTTAAGGTAATAATAATGTTAACTATTAGTCTTTCTTTGTCTGAGGAGTCTTCTAGCTGGAATGGTCAGGGGTATATGGATGATTCCTCGTCGTCAATGTCATTGTTCAAGTCTTCGTTAGACAACTAGAGATTAACCAAGTGAAATTTAGGCAGTGCAACCATGGTTGTACACACTAGAGATGCGAAGGAAGGCCTTATCTCAAATGATATTGTCACGAAGATTGAGGTTGATTTCTTTGATGAGGGGGAGGAAGTGAATCTTCCACTCGTCCCACGTTATGATTGGCGTCACACGAGGTTTGTGAATATGTGACTAGCTTTCGTTGGGGTGCGAAATTGTGCGATTGGACTGGAAAGACATATGTGCTTGGCGACAACATAGAGGACCACGTGCTTGACTTGCGAGTCTACAAGGAAAATACATGGATTTGTCATGACAGGAAATGTTTTAAAGCAGACTTCTTTTTCATGTACGCCTACTTGTTCACCAATATGCTCGTCAAGATATCTTTCAAGAGTTTCAGATGGAGGTGTTGCACGAATTTAATATGGCACCTACTCAACTCCATCCGAACAGCTGGGTGGCTAATAATGTCTTTTAAGTTTTATGCTTGATACTTGATTTGACACCTATGTCTCGTGATAGAAGCCAAAATACTTCGATATCGATCACTTCAAACGAGGTGGTCATCCAACTTTTTAATTTCAAGTCTTCTTGTAAACATGAGTTATCTACTAAATGTTCTCTAATTCCAAAGTTAGTTTGAATTCAAATGCAAGAAGAATAATAATGTGTAATTAATGTACACCTACCACCTTATCATAACTCTAATTTATTGTTTTTCCAGTGGGCTTTTGATTATATAACTAATTTATTTGTGATCTAAATTGACTTAAACCTTAATTACTGACCTAATCAGAATTATTTAGCTATATGAAAATAACTTTATTTACATTTTGTTTTATATTATCTAATATCATATACATAAAATATTTTCTAAAATTTTAATTAATTACTTAATATTTTTAATTAAATAAATTAAAATAATAATTATTGTAAATGTTAACTTATTTTATTATAATTAGTAATTAGAACTTAATGTTAGTGATTTATATTATAATATTGTTGAATATTTTGATTTTCAAATAAATAATAAAATAAATAATGTTTTATTTTAATTTTTATTACCAATTGGTTTAATGGGTTAACTAGGAGAAGTTAGCCGCCTCATCGCTATCAATTTAACGGCTTAAACAAAACATCCAATCACTCTACCAATCCTAATTTCTTTATTCATGCTTCTTTCAAAACTATAATCCAAAAAGTTAGAGTTTTTGTTAATTAAAGATGGAGATTCGGCTGTTATAATTCAACTAACAGTTAACCATACCAACGTTGTTCACAAGAAAGTGAAAGTTATTAAACAGTGTCCCTGGATGTCTACACTGTACTCAATAAGTGAAGAAATAATTTATGATGAGAAAAAAATACTTTTGCCTATTACTAGAAAAAAATGAAAATTATATTGATATTATGAAAAAGTTAATTAGAAAACCTAGTACAGAAAAAAAAAACAATTTTAAACTTTTATTTTAATATAATAAATTACTGTAGGTAAATTTTATTGTATCACTTAAACCTCTTGTCAAAAGAGTCGTTCTTGTGTAAAAAGGCTGCGTATAAAACGAAAACAAATGAAGAGTGGGT


Gene Sequence:
>Vu_08057(-)
AAACATAGAAAACGCAGAATAGAAAAAGCAAAAACCTTCATTCGCAGCGTTCAACCAAAACCGAGTCTTTGGATATTCATTCATAGCTTTGTTGTTTTTCATCTGACCGATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCAGTCACTGCCAGGTCTCGCCGGATCACCGCCGGTCATCTGTGGTCCGATTTGAAGAAACGGACTTCTGAGGTCATCCACTCGGACGATGACTTCGAGGCTGATTTTAGGGATTTCAAGGACGATTCCGACATCGAAACCGACGTCGACGCCGACCACCAAGTCAAACCCTTTGCTTTCTCCGCCTCTTCTCGTAACTTCTCTCTCTTCTTCACAATTCTCTTTTTTTCCTTCGCATGCAAAATTATCAATGTCTGCTTTTTTGTTTGATTTTTTCGGACCAGTTTTTATTCATCCACTGGAATGGAAATCAATTTTGTTGGGCATCATGTGATATGAATTTCTGTACCCTCAATTTTAAAGTGAATCTAATATGTGATTTTCGTTTATGGAGTTGACTGTAGGGAATTTTATTTTCTAGATCTGCTAGAAACTCTTTGACTCGTTATGGATCCCGGGTTGATTTCTTGAATGATTTGTTTTTTGGGAGAAATGCTTCTTGTTTAGGAGTGTATGTTTATCCATTTTTCGTACCAGAGTTCACTTTCTACTGATTTTAACTCAAGGATCACTTTGTGGATTTTGTTGAAATTGATTGATGTTTCATTTCATCGTGTTGTTTTGTTGTTATCACAAGCTACAAGCTGTTCTGTCTCTCGGTCGCACACCACTGCAATTGTTCTTTCTCAGTATAGTGGGTGGTAACCTTCGCCTTGATTAAAAAACTAAACTACTAAAAATGATTTTTACTTTATTGGGGAGACTTCTAAAGTCCTCGAAGGGTTTTTGGGAGGATTGGAAATTTTCTTATATGATCCATGTATGATATCATTATTGTTATTTTCTTTGTTTAATTGTTCTGAGTGTCTGTTTCCCTCGCCGTGAAATGTGTTTATTAAAGAGCGGGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAAAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCTAAATTAAATCCACTGGGAAATCGGAAGATTGTTCAGCCCAATGTTCACAAGTTCAATGCTGGGAACAATCAGAACGATCTTCGTTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTTTGCTGACATGGGTTCCTTCCCCGGCAGTGGAAATGGGCTCAGATCTCTGCCTTCGACTGATAATGTGACCCTTTACTTCAGTTCAGATCAGGGGAGTAACTCATTTGATTGTGCAGATCTTGGGTGGAGTGAAAAGGCTCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGCGATTCTCATTTTGCAAAGGATGCCACCCATCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTTCCAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAATTGAAGTTTTTTCAGATGCCTTATCTTGAAGGGAGCTGGGACGATACTTCATTGGAATCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTGCTTCCATGGCTGGCGGAGTTTTCTGAGCAGCCTTTTGTTGGCCTCCTCCCTGTGTATTTAAATAAGTTGCACATCATTTTTCATTTTCCTTCGGAGTTCATTAATCTTGTTTGTGTTTTTTGTTGCATTTATTCCTCCCAAGTACACATCCTTGCTTGTGCTTGACAAAAATATGATGTTATTTCCATTTTTCTTGCTATCTGGAATGGTTGTGATCTCTGTTGAGGATAGAGTTGAAAACAATTAACTCGCTCAGCACGAGTGAAGTTTATTGATCACTTGCTTTTAAATTATGGGACTATATATAGCTATTTGGGCGCTCTTTTACCTTGTCAAAGTCCATAGTTTTAGCTTCAGGGAATCTCGATTGATGTTGCAGGGCGATTATAATATGATCTGTGAAACAGTCTTGGCTGCTGATATTTTTGAACTCGGTTGTTTCTCTACGGTTATCTTCTCGTGAGAAAATTTGAAGGATGAAAAAGAGCACTATGATGAGCAAGATGCAGAAAATTATAAATATTTGATTTCAATAATTTTGTTAGTTTGGTATGTAAGAGATGGAGAAGTTTACGAAACCAAAGTTTTTCAATTCCATTGCGTAGAAGTCCAAAATGTCGGGAATGTTAAGGTTACGATTGTTGTACATGATGTATGATGTAGAAATATGGTGTTCTTTAAGCAATCGTCTTCAATGTC