Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08083 LG2 2665665 2667245 PREDICTED: B3 domain-containing transcription factor NGA1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   flower development, regulation of leaf morphogenesis, stigma development, regulation of leaf morphogenesis, stigma development, stigma development, leaf development, leaf development, stigma development
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding
SNP Position Effect Amino acid change
T/A 2665666 splice_region_variant&synonymous_variant p.Val458Val
C/G 2665668 missense_variant p.Val458Leu
T/G 2665683 missense_variant p.Ile453Leu
C/A 2665691 missense_variant p.Gly450Val
C/A 2665692 stop_gained p.Gly450*
C/G 2665713 missense_variant p.Asp443His
C/T 2665721 missense_variant p.Arg440Gln
C/T 2665779 missense_variant p.Glu421Lys
C/T 2665788 missense_variant p.Ala418Thr
G/T 2665793 missense_variant p.Thr416Asn
T/C 2665794 missense_variant p.Thr416Ala
C/T 2665797 missense_variant p.Val415Ile
T/G 2665818 missense_variant p.Lys408Gln
A/G 2665842 missense_variant p.Phe400Leu
G/A 2665853 missense_variant p.Pro396Leu
C/A 2665869 stop_gained p.Gly391*
T/C 2665902 missense_variant p.Ile380Val
C/T 2665905 missense_variant p.Ala379Thr
C/T,* 2665908 missense_variant p.Glu378Lys
G/T 2665910 missense_variant p.Thr377Asn
C/T 2665918 stop_gained p.Trp374*
G/A 2665923 stop_gained p.Gln373*
G/T 2665929 missense_variant p.His371Asn
T/A 2665932 missense_variant p.Asn370Tyr
C/G 2665953 missense_variant p.Val363Leu
G/A 2665962 missense_variant p.Arg360Trp
C/G 2665988 missense_variant p.Gly351Ala
A/G 2665990 synonymous_variant p.Arg350Arg
C/T 2666009 missense_variant p.Arg344Gln
C/A 2666029 stop_lost p.Ter337Tyrext*?
G/T 2666091 missense_variant p.Pro317Thr
G/A 2666364 missense_variant p.Arg226Trp
C/A 2666369 missense_variant p.Arg224Leu
G/A 2666402 missense_variant p.Thr213Ile
C/T 2666931 splice_acceptor_variant&intron_variant
T/C 2667010 intron_variant
T/C 2667012 intron_variant
T/A 2667199 missense_variant p.Glu16Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08083.1
MDLIQQVKGTYSDSREEEEEEEVTEIIGITREAESSRLHHQDAASNFGKKLDLMELSLGSSKEEEGEGNLQGGGGGGGGGPLHHHHQHHHHQQHEHHHHHDGHGTCSNAKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMYRHRLYIDWRRRTDHGHPPSDPSASPLFLPSIRWYSLPATSPIVPPRYHHDHHFHHLNYNNLFTFQHQHQYLGHAHGAATSAAAAAHHHNNYGEHNSGSGTGSLYYLRSSMPMGGGADQNLAGRGNSIVPMIIDSVPVNVGHHNHRHGHGGMSSGGGSSTTSSGKRLRLFGVNMECASSGEDSKGLSLGSAAHVTVGNSLPSSSSLQQRLRMPHEDPLSSSARFGDHKGGSGTSLLFDLDPSLQYHQ*


CDS Sequence:
>Vu_08083.1
ATGGACTTGATACAACAAGTTAAAGGCACTTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGACAGAGATTATTGGTATCACAAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGAGTTGTCACTGGGGAGCAGCAAGGAAGAGGAAGGGGAGGGCAATTTGCAAGGCGGAGGAGGAGGAGGAGGAGGAGGACCGCTTCATCATCATCATCAGCACCATCATCACCAACAGCATGAACATCATCATCATCATGACGGTCACGGAACTTGTTCAAACGCCAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCGTCGTCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGATATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTTTCCTTCCAGCGTGGCCTTGGAGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGGACCGATCACGGCCATCCTCCCTCTGATCCCTCCGCCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGTTCCACCCCGCTACCACCACGATCATCACTTTCACCATCTCAATTACAACAACCTCTTCACTTTCCAGCACCAACACCAGTACCTTGGTCATGCTCATGGTGCTGCCACTTCCGCCGCCGCCGCCGCCCATCATCACAACAACTACGGCGAGCATAATTCGGGATCTGGGACTGGCTCACTCTATTACCTCAGGTCCTCCATGCCAATGGGTGGTGGTGCTGATCAAAACTTGGCAGGCAGAGGGAATAGCATTGTGCCCATGATCATCGATTCGGTGCCGGTGAACGTGGGTCATCATAACCATCGGCATGGGCACGGTGGCATGTCGAGTGGCGGAGGTAGTTCAACCACAAGCAGTGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGGGGAAGATTCGAAAGGCCTGTCTTTGGGTTCGGCAGCGCATGTGACAGTGGGAAATTCACTTCCTTCTTCTTCGTCACTCCAGCAACGGTTGAGGATGCCCCATGAAGACCCCCTTTCTTCTTCAGCAAGGTTCGGTGATCACAAAGGCGGAAGCGGGACTTCTCTGCTGTTTGATTTGGATCCCTCATTGCAGTATCATCAGTAG


Promoter Sequence:
>Vu_08083::LG2:2667245-2669245(-)
AACTTTACAAACTTTAGCCTAACATAACAAAAACAACTCCATCTTAATAAATGTATTAAAACAATCTTTACTGAATAAATCGTATGTAGTTTGTACACAGGAATTAAAGCACTCCGCATACACTTTTAATATCTGTGTTCATAAATCTTATAACTAACTTATTATACTTAAAATACTTTTTTTATTAAGTTCTATCACCTAAAGTTTAATGATTTCTTCTGTACATATAATCAATCTCCTTAAGTAAACTATATATCTTTATAGGAAATTGCACTGGAGTTGTCTAATTTTTATAATTAACTTTGTTAAAACAAAGTAATTAATATGCACGAGCCAACGACCTTATATACACTACTAACGGTTAACCATTTACCCAGAAGGGTTATAATATCTCTTCACGTTTCAAGGTATTAGTCTCGAAGAGTGAGACCATGAAGAGTTGCAGAAAATGCAAATGCATAAAAAACAATTTGCTTACATTAACCAATGATTGAAGTTTTATAACATAGGAATAAAATATTGATATACAATGTTTCGTATATGCATACAAACTGAAGACGTACATATAAAAAAAGGTGTTAATTATTGTAATAAGAAACATCACGAATTGAAAATGTAAATAGAGGAATAAGATCAAAAGGTAGGGCAAAAGGGTCCTTGGAGTTTTGAGTTATATATGAAGGGAAGTAGAGGGTGGTGTAGTTGTGGTTGGCTTGGAAGAGAAAGATAGTTTCCATATTAATATTGATTGTTTATAAGGACAGAAAAGAGTTGAAGGGAAGAGAAGAAGAGATTATGAATATATATATATATTATTGAGAGAGAAAGAGATGGCAGGAGAGAGGATGGAGTGGAGGGCAGGGTGGTCTGTTTTGATTTTCTCATAGTTTAGGCATTTGCTTTTCCTTTTGTTACCTTTGAGCCGGGGACCATCCAGAAGAGACTCAATCAATGACACACTAAAAGTCAAAAAAATAAAAATAAAAATAAGTGTACACTAGTCTATCGTCTCTCTCCATAATGCCATTATGCCATTGCCATTTTCTCTGCTACAACTAGGTAGAGCCATGTAGTTTAGCCCGTACCATGTGTGTGAGCTGCCATGAGATAAATTAACAGACATGATTGCGTTGGTTTGTAGGATTTAGGAAGAAAATGAGGGTGAAAGCAAAATTTAACAGAGTTAAGTTAAGGTCATTGGTTCTGGATTTGGTCTCAACCCAGAAGCATATGTACTGTACAGATTATACCAAATATGATGAAAACGACAAGTTGCTCACATGACCACAATAGGCACATTATTCATGGCCCCCACGTAAGTGTAGTAATCCTCTCTATCTACCTTTCTCTCTCTCTCCCACGAATAAAACTGGGTTGCAACAAATTTTTTTGCTTCTTTTCCTACTTGTAAAGAACCTTCCTGTGAGGTAACTATACTTATAGCTAAAATCCACACGACTTCTCTCTCTCTCTCTCTTTCTCTCTCTCGATCTAACTTCCCATATTATGCTTTATAGGTCAGCAGCAGTATATAACAATAACACGACCCCTTTTTGAATTCTCCATTCCATGGCTTGTCTTTCTTTAGGGTTTGGATTTGGAGTGTTCTGGTCAAATATGAAGGCACCGACGGTTTTAATTTTTGTGTACTGAGAGTCTGCTTTTGTTTTTCTTATTAGAGCCTCGGCAATCTGGGTAAAATATCTTCTTCCCCATGCTACAGCTATTTCATGGCAACCTTCAATTTATTCTCATTAAGTCTTTTTAATTCGCACCTGCTTTTCCTCAGACTTTTCCGTTTCTTCTCAAATTTCTCTTTTTGTTTTTTTTTGTTTTTTCATTTCTGTTTACTTTCCTGCCCTCTTTCTTTCTTCGATCGCTTTATTCTAATGATTTCGTTTTTTATTATTATTATTGTTTGTATCTTTTTTTTTCCATTGTTTTTGCTGAGATCCAGAGGTTATTATTAACAGAATTGAAGGTAGGTCAGCCATAACTCC


Gene Sequence:
>Vu_08083(-)
ATGGACTTGATACAACAAGTTAAAGGCACTTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGACAGAGATTATTGGTATCACAAGAGAAGCAGAAAGCAGCAGTAAGCTGGCTCTATTTTCTTACCCCTTTTAATTTCTTCATCGATCCACCACAAATTAATTAACTCCTCTCTTTAATTAATCATCCTCGTCTACTTCAATTCTTCATGTAATAAATATTCCCCCACACCTTCAAAATCCACGGTTGGGGAACCATCGTTAATCTCTCTACGCCACTGACACTTCACCCACTCCCCATGAATTAGGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGAGTTGTCACTGGGGAGCAGCAAGGAAGAGGAAGGGGAGGGCAATTTGCAAGGCGGAGGAGGAGGAGGAGGAGGAGGACCGCTTCATCATCATCATCAGCACCATCATCACCAACAGCATGAACATCATCATCATCATGACGGTCACGGAACTTGTTCAAACGCCAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCGTCGTCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGATATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTTTCCTTCCAGCGTGGCCTTGGAGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGGACCGATCACGGCCATCCTCCCTCTGATCCCTCCGCCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGTTCCACCCCGCTACCACCACGATCATCACTTTCACCATCTCAATTACAACAACCTCTTCACTTTCCAGCACCAACACCAGTACCTTGGTCATGCTCATGGTGCTGCCACTTCCGCCGCCGCCGCCGCCCATCATCACAACAACTACGGCGAGCATAATTCGGGATCTGGGACTGGCTCACTCTATTACCTCAGGTCCTCCATGCCAATGGGTGGTGGTGCTGATCAAAACTTGGCAGGCAGAGGGAATAGCATTGTGCCCATGATCATCGATTCGGTGCCGGTGAACGTGGGTCATCATAACCATCGGCATGGGCACGGTGGCATGTCGAGTGGCGGAGGTAGTTCAACCACAAGCAGTGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGGGGAAGATTCGAAAGGCCTGTCTTTGGGTTCGGCAGCGCATGTGACAGTGGGAAATTCACTTCCTTCTTCTTCGTCACTCCAGCAACGGTTGAGGATGCCCCATGAAGACCCCCTTTCTTCTTCAGCAAGGTTCGGTGATCACAAAGGCGGAAGCGGGACTTCTCTGCTGTTTGATTTGGATCCCTCATTGCAGTATCATCAGTAG