Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08368 LG2 5294156 5297370 serine/threonine-protein kinase PBS1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, seed development, protein phosphorylation, protein phosphorylation, seed development, macromolecule modification, seed development, seed development
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane, plasma membrane, chloroplast, plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, ATP binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, ATP binding
SNP Position Effect Amino acid change
T/G 5294219 synonymous_variant p.Ala282Ala
G/A 5294220 missense_variant p.Ala282Val
T/C 5294391 missense_variant p.Gln225Arg
A/G 5294512 intron_variant
A/T 5294546 intron_variant
C/T 5294815 intron_variant
G/T 5294829 intron_variant
G/A 5294867 intron_variant
C/G 5294965 intron_variant
G/C 5294983 intron_variant
G/C 5294984 intron_variant
T/C 5294990 intron_variant
G/T 5295068 intron_variant
T/G 5295253 intron_variant
G/A 5295283 intron_variant
G/C 5295557 missense_variant p.Leu156Val
T/G 5295591 synonymous_variant p.Thr144Thr
G/A 5295592 missense_variant p.Thr144Ile
A/T 5295604 splice_region_variant&intron_variant
C/A 5295663 intron_variant
A/C 5295945 intron_variant
C/T 5295955 intron_variant
G/C 5295961 intron_variant
T/C 5296091 intron_variant
C/T 5296106 intron_variant
A/T 5296126 intron_variant
A/T 5296425 intron_variant
T/C 5296475 intron_variant
T/G 5296494 intron_variant
G/T 5296568 intron_variant
G/T 5296687 intron_variant
C/T 5296722 intron_variant
T/C 5296768 intron_variant
A/G 5296943 intron_variant
C/T 5296952 intron_variant
T/C 5296960 intron_variant
A/G 5296961 intron_variant
G/T,* 5296978 intron_variant
A/T,* 5297038 splice_region_variant&intron_variant
A/T 5297162 upstream_gene_variant
G/A 5297358 missense_variant p.Pro5Ser
T/G 5297359 synonymous_variant p.Thr4Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08368.1
MTQTPQHKSEETLFYILGGIVVLLIVLIFLYVLRKRLKWSPHNMTEQQEIRKHRESADMMKMIFSSNQQSGSKEFFSGNLGTINCFDYQTLKNATMNFHADNFLGSGGFGPVYKGKLADGRVVAVKKLSLNKSQQGEKEFLVEWTPKPLFDECLKELRGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDHTLPSEMQYLPEYAWKLYENARILDIVDPKLQEHGLVEKDVMQAIHVAFLCLQPDAHLRPPMSEIVALLTFKIEMVTTPMRPAFLDRGAKKDDEKQSLGEIYHGLTSPI*


CDS Sequence:
>Vu_08368.1
ATGACACAGACACCACAGCACAAATCTGAAGAAACATTGTTTTACATCCTCGGAGGAATTGTTGTGCTGCTCATAGTGTTGATTTTTTTGTATGTACTTCGGAAGCGTCTAAAATGGTCACCACACAATATGACAGAACAGCAAGAGATTCGGAAACACAGAGAATCAGCAGATATGATGAAGATGATTTTTTCATCTAATCAACAGTCAGGGTCCAAGGAGTTCTTTAGTGGAAACCTCGGGACAATTAACTGCTTTGACTACCAGACATTGAAGAATGCAACCATGAATTTCCATGCAGATAATTTTCTTGGAAGTGGTGGATTTGGACCTGTTTACAAGGGAAAGTTAGCAGATGGAAGGGTGGTTGCCGTTAAGAAATTGTCTCTCAACAAATCTCAACAGGGAGAAAAAGAATTTCTGGTAGAGTGGACACCTAAACCACTGTTTGATGAATGTTTGAAGGAGCTTAGAGGTTATACTGCTCCTGAATATGCCATTAGAGGAGAATTATCAGAAAAGGCAGATATCTATAGTTTTGGAGTTCTCTTGCTTGAAATAATCTGTTGCAGGAAAAACACTGACCACACTTTGCCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTGTACGAGAATGCAAGGATATTAGACATTGTAGATCCGAAACTTCAAGAACATGGGTTGGTAGAAAAGGATGTTATGCAAGCAATCCACGTGGCTTTCTTATGTCTGCAGCCTGATGCACATTTGAGACCTCCGATGTCAGAGATTGTGGCATTGTTGACATTCAAAATTGAAATGGTGACAACACCAATGAGGCCAGCATTTCTGGATCGAGGAGCAAAAAAGGATGATGAGAAACAATCTTTAGGGGAAATATATCATGGTTTAACATCTCCCATATAA


Promoter Sequence:
>Vu_08368::LG2:5297370-5299370(-)
CTTATTATATGTATACTATGTGTTCTTGGATTGGAGAAAGGAATCTAAGTGGATTGAATTTGAGAGTATTGTAGTGTTGTTTGGATTAGTTCACTTGTGAAAGACAAATTTTAGAAAGTGTGGATAGATTTTGGTGGATTTGAGTAAATGTATTTGAGTGGTATCTTTTAAAGAATTTGAAACTGAATATAAGTAGATTTGGAGATGAAATTATTGAATGATTTGACTGATAAAAAAAATTAATAAATTAACATATAAGATTATTATTTTGTTCTTATAATTAAAATTAATATATTATTTTTTATTATGATAATAATAATTATTTATATTATTAAATTATATTGTAAATGTAATATATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAATCAAACACACACTCACATATGAAATCGATTCCATAATCGAGTCTATTGCTTATATACACTCATAGAGAATTGATTCACATAAACTCATCAGCTTAGTATAAGCCTTAAGAAAAAGATTATATGATTTGAAATAAAAATTTATGAATGTTTGTTTAAGATGTGATGAATATAAGAAATTAAAAAATATTTTAATAAATATAATAAAAAATAAGCAATCTCATTAAATGAAAAATAACATTTTACTTAATCAATTAAAGATTATTTATACCCTCACAGATTTGTTTTTGGTACCACTCCAAAAAACTTCTTATCAATGAAAGTATCTTATGTGTATATAAACTCATGTTCATCTCTTATTTTATCTAATATGGGACTTTGTTTGTACCTAACAAGCGTGACCTCTTCTGTTTAGTATATTTAAATTTCATTTCTTACTTTTGAAATTCGGAAATTGCTTTAAGGAAATATATATTTTTATCATTTTAAAAATGAAAATATTTAAATTGAGGCTAGAATATTTTCAACCATTAGATATATTTAGATTTTAAATGATGGTTTGAATTTCATGAGGTGTAGATTACTCCAACAATGTGCTACTTGTTTTTATCGCCATTAGAATCTTTAAAGAGTATTCCATCATTTAATTTAATTAACATACGAGAACATACAGTTGTCATGAGAAAAATTGTACTACTTGAAAACGTTGTTAGTTTAAGTCCTTTTTATAGACATAATTTTTATTCTTGCTGGTAGAGATAGTTCCTACCAGTGCATGTAAATATTTGTTGTGTCCTTTGTAATATCACAAGGGTCAAAAACAGGGGATGCTATAAACATTTTGGATTTCCATCAACTCTTGTAAAAAAATATTATTAAAAAATATGTGTTCAAGAGTCCTATGTAACCAATCATTGGCATATTTCTAGCAGAAGAAATCATTCTCCTCTTGTTTTCGATCTATTCTATGGGATATTCTTAGAATACTTCTCCCTTTTTCTGTCACACACATATGAACTGTCAATCTCTTTCTCTTTTCTCACAACAAAGTACAGATTAATAAATAGAATAACACAAAGCAAGAAAAAATAATAGGAGAAATTGAACCACAGAAAGCTTTCTTTTCTCTCCAAGAATGTCTCCCCGAACACTCCAAGGTTTCATTTTCTCAATTTGTGTCTGCACAATTGTCACAGTGATATATCAGTTGGTCAAACTTATTTTTGTTATAGCAATTGCAAATTCATGCATCATAAGTTGAGCATACATACATTTTGATCATCCATTGAAGCTAGAATGTTTCAGGATTATTTAGTAGCATTGAATTGGTTCAATTTGAAAACCACACTCAATCACATGACCCAGTAAATTGTTAAAGGGTCATCCACTAATTCCAGAAACTTGAACAAAGCAAAACAAACATTGTAGCTACTTCAAATAAGATTTTGGTAGAACTTCTTTGATGCATCTTGTTTCATTTTACCAAGTCTTGAACATGATCATGAATCATATGATCTTTGATAAAGTTTGTGATTGATTGCAACAGAAGCTTCACTCTCTAAT


Gene Sequence:
>Vu_08368(-)
ATGACACAGACACCACAGCACAAATCTGAAGAAACATTGTTTTACATCCTCGGAGGAATTGTTGTGCTGCTCATAGTGTTGATTTTTTTGTATGTACTTCGGAAGCGTCTAAAATGGTCACCACACAATATGACAGAACAGCAAGGTATTTTGATAAATGAGAAAAATCATCATAAACTAATGTAAAAATCTTTGAGACCTTGTGGTTTGTTTAATATCCGTGATTATCCTATGAATAAATGTTTCTGTTTGTTCTTAATTAGAGATTCGGAAACACAGAGAATCAGCAGATATGATGAAGATGATTTTTTCATCTAATCAACAGTCAGGTATCTCTAACAGAGAATTGCATGTTTAATCAAATATCTTGCATATATCATCCTTGGACCTCTCTCTCTATATATATATATATATTGAAGTTAATTAATTTCAATATGTACACAGGGTCCAAGGAGTTCTTTAGTGGAAACCTCGGGACAATTAACTGCTTTGACTACCAGACATTGAAGAATGCAACCATGAATTTCCATGCAGATAATTTTCTTGGAAGTGGTGGATTTGGACCTGTTTACAAGGTATAAACATTATATCTAATAGGAAGCATAGAGAATTTAATAAAGGGAGTTGCGAACTTGATCTATACATGCAGTAAAATCACCAGTTTTTTTCAGTCTTATCTTATCCTGGAATTGGTTACACAGATCACAGGGTACTATTAGATTTGGTTAAAAATCAAATTTTGTAAGATGACATTACCTATGAAGTGCCTCTTGATCATAATACAATGTCATATTTTTGTTGGCATGGTATTTACAAGTGAAGTTTTAGATTGATTGGTAATAGGCAAATTGAACAAAAAGTCATAAGTATTCTCATAAGTAGCATAATTGCAAGGATCAGAGATGATAAAAGTAAACTTTAAATCTAACAATATGTGATAAAATTTACTTATGAGACAAGATTTTATTGTATATTTATACTGTAGTTAAGCCACATTTTTAGAGCGTTGTTATGTTTTAACAGGGAAAGTTAGCAGATGGAAGGGTGGTTGCCGTTAAGAAATTGTCTCTCAACAAATCTCAACAGGGAGAAAAAGAATTTCTGGTAGAGGTGAGAACAATCACTAGTATACAACACAAAAATCTGGTTCGTCTTCTTGGATGCTGCATAGATGGACCACAAAGGATAATTGTCTATGAATACATGAAAAACAGAAGTTTGGACCTCTTTATTCATGGTATCCTTTCTTTCTGAATTCTCTTTGGTCCTTTTTAATTATAAACAATTACTGGTGTGAAACTTTACCTGCTAAATCTGTTATTCTAGTGAACATAAAAGTCTTAATATAGTTCTATACAAGGACAACACAGTTCCAAAACTTATACAAATTCACCAATGACAACATATCACAAACAGAAACTTTCATATATAATAAAATTATAATGAAACATGTATGAACATTTTTTCCTCTCCCTAATATTATCAACTTTGCACCAGATATTGATTACCTACATTGATCAATAAGCTACCAGAATTTAATTAACTCAAATAAAGAACCCATTCTAACTTTGTGAAGAATACTAACAGTAATGAAGTGTATAAGAGAACACAATGAAGTTAAATTTATAAAAATGCATGTACAAGGCTCAATCTCATTGATTAAGGGTGTTTTAATCTTGATTATCAGGAGAAACTTGGGTCTAATCTGGATTATCAACTATCACTTTCATTATAGTTCTTATAGAATTATTTCTGTAGTGGAATATTCATATAGTGGACACCTAAACCACTGTTTGATGAATGTTTGAAGGAGCTTAGGTTTGTATTGATGGAACAATTCTTTCTTTTGACTGCTTCTTGAATGCAGAAAACAGTGATCAATTTCTGAATTGGAGAACTAGATTCCAAATTATTCTGGGAGTAGCCAGAGGACTACAATACCTTCATGAGGATTCACACCAAAGAATTGTTCACAGAGACATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCAAGGATTGGGGACTTTGGGCTAGCTAGATTTTTCCCGGAAGATCAAGCTTATCTTAGCACACAGTTCGCTGGAACACTGTATGTCATTTATGGAAAAAAATTAAAACTATATCCTTATATTATAGAATGTTATTTCTTTGCATTCACTGAATAAAAGTTGCTATATAGCATTAATAGTTCATCATATGGTTCAGAGCAATTTGATCATCATTATGATTTTAGTGCTGCCAACTGCCCGGCCTGCAAAAGTAGTGCTTTCTGCTGAGAACTTTTAATGTTTCCACACATTTCAACACATCATATCTAGCAGCATATCATTAAAGTCACCCTCTCTGATACTGTTTGAGGTGATTGGATGAAGTACACCAACATTAAATTCCATTTGTTACGACATCAATGTTATTATACTTTATGTGTAAAATGATTATTGTAGTTTTATGCACAGTGAAAATAGGATGTTTGACAAAATGTTCCTAGCATTGCATTGTAACTTTTGTTTGTCACTTGTTTTATTGAGATGCGAAACATTTTCAAGTGCCAAACAACATAACTATCTAAAGTTAAGAGGTTTCCATTGATAAATGTCATTTGTTTTTGTTTTTTACTTTTTGGGCAGAGGTTATACTGCTCCTGAATATGCCATTAGAGGAGAATTATCAGAAAAGGCAGATATCTATAGTTTTGGAGTTCTCTTGCTTGAAATAATCTGTTGCAGGAAAAACACTGACCACACTTTGCCATCAGAAATGCAGTACCTCCCTGAATATGTAAGTTCTCACATTTTCAAATACATATGTCTGTATTGTTGCTAGGGAAATGCTAGCACCACAATCTCTTTTCTATGTGCTGCATGTAACATAAATTATATTTTATGAAGTATGTTAATTAGTTTGATGATACTAGGCATGGAAACTGTACGAGAATGCAAGGATATTAGACATTGTAGATCCGAAACTTCAAGAACATGGGTTGGTAGAAAAGGATGTTATGCAAGCAATCCACGTGGCTTTCTTATGTCTGCAGCCTGATGCACATTTGAGACCTCCGATGTCAGAGATTGTGGCATTGTTGACATTCAAAATTGAAATGGTGACAACACCAATGAGGCCAGCATTTCTGGATCGAGGAGCAAAAAAGGATGATGAGAAACAATCTTTAGGGGAAATATATCATGGTTTAACATCTCCCATATAA