Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_08656	LG2	8841456	8842772	PREDICTED: CBL-interacting serine/threonine-protein kinase 6-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	response to water deprivation, multicellular organism development, basipetal auxin transport, response to water deprivation, response to calcium ion, protein phosphorylation, protein phosphorylation, signal transduction, hyperosmotic salinity response, hyperosmotic salinity response, response to water deprivation, response to salt stress, protein phosphorylation, response to salt stress
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding, protein serine/threonine kinase activity, protein binding, protein binding, protein serine/threonine kinase activity, protein binding, protein binding, protein binding

SNP	Position	Effect	Amino acid change
C/T	8841602	missense_variant	p.Val391Met
C/T	8841605	missense_variant	p.Ala390Thr
T/A	8841781	missense_variant	p.Lys331Met
A/T	8841806	missense_variant	p.Ser323Thr
T/C	8841819	synonymous_variant	p.Glu318Glu
T/A	8841881	stop_gained	p.Lys298*
C/T	8841888	synonymous_variant	p.Glu295Glu
A/G	8842005	synonymous_variant	p.Leu256Leu
C/T	8842047	synonymous_variant	p.Pro242Pro
A/G	8842085	missense_variant	p.Tyr230His
G/A	8842090	missense_variant	p.Ser228Phe
G/C	8842206	synonymous_variant	p.Pro189Pro
G/A	8842305	synonymous_variant	p.Asn156Asn
T/G	8842306	missense_variant	p.Asn156Thr
C/T	8842560	synonymous_variant	p.Ser71Ser
C/T	8842568	missense_variant	p.Glu69Lys
C/A	8842578	missense_variant	p.Gln65His
T/A	8842605	missense_variant	p.Lys56Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_08656.1

MMAEKTSSGEANNSMLLHGKYELGRLLGHGTFAKVYHARNLKSGKSVAMKVVGKEKLIKVGMMEQMKREISAMNMVKHPSIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREDTARLYFQQLVSAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVSLYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNNRITISKIMDSSWFKKSVPKDVMGAKREELDLEEKIKQLEESKSTTMNAFHLISLSEGFDLSPLFEEKKKEEKEIRFATTRTASSVISRLEEVAKAVKFDVKKSESKVRLQGQQRGRKGKLAIAADLYAVTPSLLVVEVKKDNGDTLEYNQFCSNQLRPALKDIVWRTSPSENPTPV*

CDS Sequence:
>Vu_08656.1

ATGATGGCTGAGAAAACCAGCAGCGGCGAGGCTAATAACTCCATGTTGCTCCACGGGAAGTACGAGCTAGGGCGGCTACTGGGTCACGGAACGTTCGCCAAGGTGTACCACGCGCGGAACCTCAAGAGCGGAAAGAGCGTGGCCATGAAGGTGGTGGGGAAGGAGAAATTGATTAAGGTGGGGATGATGGAGCAGATGAAAAGGGAGATCTCGGCCATGAACATGGTCAAGCACCCCAGCATCGTTCAGCTCCACGAGGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGCGGCGGCGAGCTCTTTAACAAGATCGCCCGCGGCCGTCTCAGGGAGGACACGGCGCGCCTCTACTTCCAGCAGCTCGTCTCCGCCGTCGACTTCTGCCACAGCCGTGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTTCTCGACGAGGAGGGCAACCTCAAAGTCACCGACTTCGGCCTCAGCACCTTCTCCGAGCACCTCCGCCAGGACGGCCTGCTTCACACCACTTGCGGCACCCCGGCCTACGTGGCGCCCGAGGTCATCGGGAAAAAGGGCTACGACGGCGCCAAGGCCGATATCTGGTCTTGCGGTGTAATCCTCTATGTACTCCTCGCAGGGTTTTTACCCTTCCAGGATGACAACTTGGTCTCCTTGTATAAGAAAATTTACCGCGGTGACTTCAAGTGCCCGCCGTGGTTTTCATCCGAGGCACGCCGCCTCATTACGAAGCTCCTTGACCCGAACCCGAATAACCGAATAACGATTTCCAAGATCATGGACTCGTCCTGGTTTAAAAAGTCGGTTCCGAAGGACGTGATGGGGGCGAAGAGAGAAGAGTTGGATTTGGAAGAGAAGATTAAGCAGTTGGAAGAATCTAAGTCCACCACGATGAATGCTTTCCATTTAATTTCGCTTTCGGAAGGGTTCGATTTGTCGCCCTTGTTCGAGGAGAAGAAGAAGGAGGAGAAGGAGATTCGGTTTGCGACCACACGCACCGCGAGTAGCGTGATCTCACGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTTGACGTTAAGAAAAGCGAGAGCAAAGTGAGGTTGCAGGGTCAACAGCGGGGTCGGAAAGGGAAGCTTGCAATTGCTGCGGATTTATACGCCGTGACGCCATCGCTTTTGGTGGTGGAGGTGAAGAAGGACAACGGTGATACCTTGGAGTACAACCAGTTCTGCAGCAACCAACTTCGTCCTGCGCTTAAAGACATCGTTTGGAGGACTTCCCCTTCTGAGAATCCTACACCTGTTTGA

Promoter Sequence:
>Vu_08656::LG2:8842772-8844772(-)

TGTACAATTGCTTGGGGGAAAAACGGGAAAGGAACCCTATATATAGGGTTCCATGGAAGAAGGGGAAAACAACAAATAAAGTACATAAAACACCTGAAAAAAGATAACTGTTGAAATACAGTTAAGAGAATCAACAGTGATTCTCAATACCAAATTCACTCAAATAAACGACAAAAAAATTTATCTTCAAATCCTCTCAAATCCCCTCAAATCCACTCAAAAGAACAAGATCTTAATAAAGAAGAAAAATGAAAAATGCATAGAAAATAGATTGTTGTGAGAATAGTCATTGTATACTAATTATGATAATTGTACACTAGCTCCCGTAGATCTAGTAGAGTTTGTTCATTGAGATTATATGTATTATTCATTTTATCTACTTCTATTTTTTTGTCTTGGTTTGACCCTAATGAAAAATAGGGGTCGGTACCATCATTGATATATAAATACAAGTCTGTCTAAGATTAATTAATAAATGTTGTTATTCATATAAAATTGAAATTATGATAATCCGGCAAGACATAAAAAAAGAGGACAATATGTTTTATCAATTAACATTACAAAATTGAGAATTGATTATATAATTTTTCTAATACTTCTTATTTCAATAAAATCAAACAAAGTTGTTATAAATTTTACATCAAACTTCTTTTATAAATATGAATGTGACTCAAAATTAAAGAACACTTGTACTCTTTTACTTAAAGTCTTTGTACTTTAAATCATAACATATTATAACACAAATTGTTATCCTATATGAAAATACCACGAGGATTAAGAACAAATATCAAATTATTTTATTTCTTAAATGACATTAATTTTAGCAATATTAAAGAATCATTGATGTTAAGTGTTCTTAATAGTAATTTTTGTACTATAGTATATAATTAATCTTATCGGAGTTAATAATTCTCATGCAAAGACTTCACTCTTTCAAGAACTGATACATAAATTTTCAATACTTTTTTTCTTAATATGTTAATATTAGAAAATGAAATTTGTATTATCACACCACTATATTTACAGTGAAAACAGTGAAATTTAAATAATTATTTTTTGTGAAAAATGTCCATAGTCTTAACACAATTTTAATCAACCAACCAATGAAAATTTAGAGCAAAATGTTCATAATAAATAGGTGAAATGAATTGGCAATTCAATCCACAACAGTGTATTTATTTGATTCCAGGAATCTTGAGTAGGAAGTGTTTCATTAGGTAGCTCAATGAGCAGCAGTAGTAGGTTGATTGATTAATAATAATAATAATAATAGTACTAAATAATAAATAAATACAGAAACAATATGGGTACATTCCTAGGTGTTATCGCTGTCATGCGGGGACGAATGTTACATCTTTGCTTTTGTTGCTGCAAACCATAAGATTCTTAATCTTTTACTCTTATTCGCTCTCACTCTGAACCTCATGTGTCACTCATTCATGAACTAACAACCAAACCACACATCTACAACAACCCTTTTTACCATTTCCACACTCCTTCCTTCTCTTAAACAGAACAAACACACGTGTCACCATCCAAGCCCAAGATACCTTCCACGATCATGCCACGTGTCCTAGTTCGTTCCAACCAGGGCCAAATACGTAATTGCCCTGATACAAAAAGGCGCTTATAAAGAAGAACTGGAAGCGCAGAGAATGAAGGAAACAAGAGAGAAACAGGGAAACAGGGAGGGAGAGAGCGATTGAGTAATTGGGAAAAATCAAGCGAGTGGTTGTTTTTGGTCCCGGAAGGACCAGGGAATGAATAGAGATGATAGGTTTTCGGCTGAAGAGAACTGAGCTAAGTGGCCAAGCCAAACGCAGAATCGGCGGCAGAAATTGCCACCGGAAGCACGTCGAAGACGGGTGAACTAGCCCACCATTTCTCTTCAATTTCCCTTCCCCAACCCAAATCTGTAAGATACCACTTCTGTATTGTAATTCGCAGCACTGCTAGTACTAGTAGAAGTAAAAGGAGTAGTAGTGTTTTTCTATATTTTG

Gene Sequence:

>Vu_08656(-)