Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09171 LG2 16265826 16267394 nuclear transcription factor Y
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of photomorphogenesis, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of photomorphogenesis, positive regulation of photomorphogenesis
Cellular Component   is active in   CCAAT-binding factor complex, nucleus
Cellular Component   located in   nucleus, cytosol, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription activator activity, RNA polymerase II-specific, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein heterodimerization activity, protein binding, protein binding
SNP Position Effect Amino acid change
A/G 16265828 missense_variant&splice_region_variant p.Val280Ala
G/A 16265912 downstream_gene_variant
C/A 16266116 downstream_gene_variant
A/G 16266126 downstream_gene_variant
G/A 16266155 downstream_gene_variant
G/A 16266272 downstream_gene_variant
T/A 16266872 synonymous_variant p.Pro126Pro
T/A 16267063 missense_variant p.Asn63Tyr
T/A 16267314 missense_variant p.Lys27Asn
T/A 16267329 missense_variant p.Lys22Asn
C/A 16267342 missense_variant p.Arg18Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09171.1
MVEEDGGDRWAEQSNIGRKEKKRKKGKGHLQCYVWLRYEVTQHNNTTLSSSSSSSSAILRIGGMENNQQGGQGQSGAYPGAAAGSAGAGAGAPPFQHLLHQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAADDTSYGGAGGAGRLP*


CDS Sequence:
>Vu_09171.1
ATGGTAGAAGAGGATGGAGGTGATAGATGGGCAGAGCAGAGTAATATTGGAAGGAAAGAGAAAAAAAGGAAAAAAGGGAAAGGGCATTTACAATGTTACGTTTGGTTGCGTTACGAAGTGACACAACACAACAACACAACACTCAGCAGCAGCAGCAGCAGCAGCAGCGCAATTCTCAGAATTGGGGGAATGGAGAACAACCAGCAAGGGGGCCAAGGGCAATCGGGAGCCTACCCCGGCGCGGCAGCCGGAAGTGCAGGTGCAGGTGCAGGTGCGCCACCCTTCCAGCACCTCCTCCATCAGCAGCAGCAGCAGCTGCAGATGTTCTGGTCCTACCAGCGTCAAGAGATCGAGCACGTCAACGACTTCAAGAACCACCAACTGCCCCTCGCTCGCATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGCATGATCTCGGCAGAGGCCCCAATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATAACCCGCACCGACATTTTCGACTTCCTTGTTGACATCGTTCCTCGCGACGAGATCAAGGACGATGCCGCGCTCGTCGGGGCTACCGCTAGTGGTGTGCCTTACTATTACCCTCCCATTGGCCAGCCTGCCGGCATGATGATTGGCCGTCCCGCCGTTGATCCCGCCACCGGAGTCTACGTCCAGCCCCCGTCCCAGGCCTGGCAGTCTGTCTGGCAGTCCGCTGCCGACGACACATCGTACGGTGGCGCAGGCGGAGCCGGCAGACTTCCGTGA


Promoter Sequence:
>Vu_09171::LG2:16267394-16269394(-)
TGTTTAATCCATGATGTAATCTCAAAGAATCCTCTGAATATGAGGATAAGCTGGTTGAATACCAAAAGCAATGATGAATTGGCCCCAATAAAGTGGATCAGTTCTGGCTTTCTTAAGACCAGTGGAGAGTTCAGAATAGGAAAGCGTGTGTATTATAGCACTCTTAACTCCTTTTCGCACAGAGTGAAATGGACAAAGGGTTCGAGAGGGGTTGTCCATATATATCCGAAGAAAGGTGATGTATGGGCACTGTATCGGAACTGGTCCCTTGACTGGAATGAATTCACTAAAGATGAAATCATACAGAAATATGACATGGTGGAGGTGCTTGAAGACTACAGTGAAGAGCAAGGGGTGAATGTTGCCCCACTTGTCAAGCTTGCAGGTTTCAAGACGGTATTTCGGCAGAATATTGATCCAAGAAAGGTCAGGAATATTTCAAAGGCGCAGATGTTTCGTTTCTCACACCAGGTACCTTCATACTTGCTTACTGGTGAAGAGGGTCCCAACGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCTACGCCGATGGAGCTTCTTCAGGTGTTAGCTCAAGATCTGGAGCAAGAAATAATAATGACAACTGAAAAATCTGTGGAAGATGAATTGAAGCACAAAGAGAATTCCAAGGAGGAGGGTTCGCTTAAGGGGTGCCAGTCAACCAAGGAAGAAGGTTCTGATGCAGGATTAGGAGAGAAGAGAAGCAAGCCTGAGATTTTGTTTGTATATAAGCGGAGACGTCTGGGGGAAAAGAGAGCTGTGAAGTGTTAATTAAAGTAATGTTAATGATTGGGAAGAGATTTTGTGTTCCATTTAGCCAGAGATAGCAAATTTAATTAGTCAACAAAACTATAGCTTACAGTCACCAACTCAACATACATTAGAACAGTTTTTGTTGTTTTTGCTGTATATTGGCGGGACTACAGTTTTGCTTTGAGTTTTGCCATTGCCCTCAGGACTTATTTCAGTTGTATCTATGAAAATCTATGAAATGCCAGTGTACGGTAGTTATTAGTTTCTGCAAGCCAATAAATTTCAGCATCATTTTTAACTTTTTTGACCGGGAACATTGATCTCCATGTTCAAAAATTCATTTTTTTCTAAAGAATCCTGCTATACAGGTCAAATCATACTCCATAAGATGTTTTTTTTTTCACCTCAAGGATGAAAGCATTTATACCTTAGAAGTTCCTCATGAATTCCGTTCTTCTTTCAAATTTGAACAAATCTTAAGCCTTTACAATACTAGTAATATATTCAGTTTTTTTCTTTTAAGAGAAAATCTCAGATGATATTAAGATTATGCTTAAACTGTTATTTTTTCTTTTTCATTTGGGAAGCTGGATGCTCTTCTTAGCTCTAGTTCGTTATGAAGTTGTTTTGAGAGAGCTTGAGATAGGGTTTTTTGTTATATAATTACGTGGTTAAATTGTTGTTCATGGATCCACTATTCCTACACTTGTAACTGCGCCACATTTTCAAATTTGTTTCCATAGTTGAAAAAGTTAATACGTTCTTCTAGTTCGAAATCTTTCAACTATGTTCTTATTTACTAATGGTAATTGATTTTGTCAATTGAAGATGCTCTCCTAAGAATTTATGTAGATTATGTGAACTTAAGCAATTATGCTATATATCAAATAGTTTCGTGCATATTTATTTTTTAAATAAGACATTCTATATAGTAGGTTAACGCAACTTAGATGGTAATGTGATTAAGATGCACGAGTTTATTTATTTATCTATTTTTTAAGGTATAAAGATGAAATCACAAATTTAAACTATAAAAATCTAGTCACAAAATGAGTGAATTTTGTAAACTTTCATAATTAGTTTAACGTTATATCAACTTTGTTATTACTGTTGTCCTTATAAGTAAACGCTCTTTCAATTCATCAACGTCTTCTAAGGAAAATGTAGAAAAAGAATTATTACAGAGAAAAGGGAGAAATGAAAGATTGGGTTGGTGATGCCAA


Gene Sequence:
>Vu_09171(-)
ATGGTAGAAGAGGATGGAGGTGATAGATGGGCAGAGCAGAGTAATATTGGAAGGAAAGAGAAAAAAAGGAAAAAAGGGAAAGGGCATTTACAATGTTACGTTTGGTTGCGTTACGAAGTGAGTGAGTGAGGCCTTGGTTGGCCTAGGGTAGGTCGGGTCATTTTATTGTTTACCTTATCCCACCACAACACATCATATCACACATCACGCTCTCGTCTATTTTATTTCCCATTTTCTGAATCACTCACACCACACTCAACACAGCACAACACAACAACACAACACTCAGCAGCAGCAGCAGCAGCAGCAGCGCAATTCTCAGAATTGGGGGAATGGAGAACAACCAGCAAGGGGGCCAAGGGCAATCGGGAGCCTACCCCGGCGCGGCAGCCGGAAGTGCAGGTGCAGGTGCAGGTGCGCCACCCTTCCAGCACCTCCTCCATCAGCAGCAGCAGCAGCTGCAGATGTTCTGGTCCTACCAGCGTCAAGAGATCGAGCACGTCAACGACTTCAAGAACCACCAACTGCCCCTCGCTCGCATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGCATGATCTCGGCAGAGGCCCCAATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATAACCCGCACCGACATTTTCGACTTCCTTGTTGACATCGTTCCTCGCGACGAGATCAAGGACGATGCCGCGCTCGTCGGGGCTACCGCTAGTGGTGTGCCTTACTATTACCCTCCCATTGGCCAGCCTGCCGGCATGATGATTGGCCGTCCCGCCGTTGATCCCGCCACCGGAGTCTACGTCCAGCCCCCGTCCCAGGCCTGGCAGTCTGTCTGGCAGTCCGCTGCCGACGACACATCGTACGGTGGCGCAGGCGGAGCCGGTGCGCAGGGGAGCATTGATGGCCAGAGGTACATAACTGACTTCTCATTTAGGTCCCGTTTGGTCTTGAAGAAAAAAAAAAAAAGAAATAGAATGCAGACATAGACATGGAATAAATAAGTTGATAACCTAACAAGTAAATCTGAATCTTCGTATGTTTGATAGAATAAAACTATGTAAGATAAAAATGTCCTGATAGGAGGAACAAGAGTTCACATTGGTGCATTCGTATATATGTGTTTCTCTTAAAAAATACAATCAAGATATCCCATAAGATGAACCTTGTTCCCAAGCATTTATGTAAAGAGCAGCAAAATTCAGAATTGTTTTGAGGATTGCATTTTTAAAATTGAAAAACTATTTACAGTTATCTCTATTTTTTTTAAAATTATATATATATATATATATATATATATATATATTATAATACTCAGATTTGTATCAATCCTATCCATTCCAATACTCCAATATTGTGGGCAGACTTCCGTGATTTAGTATTGTAGGCAGACTTCCGTGATTTAGTATTGTAGGCAGACTTCCGTGATTTAGTACTGTAGGCAGACTTCCGGGGTTTAATACTGTAGGCAGACTTCCGTGA