Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09196 LG2 16960548 16962265 PREDICTED: probable WRKY transcription factor 43
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of response to nutrient levels, negative regulation of transcription by RNA polymerase II, negative regulation of transcription by RNA polymerase II, lateral root development, regulation of DNA-templated transcription in response to stress, lateral root development, atrichoblast differentiation, lateral root development, negative regulation of transcription by RNA polymerase II, atrichoblast differentiation, regulation of DNA-templated transcription in response to stress, regulation of DNA-templated transcription in response to stress, negative regulation of transcription by RNA polymerase II, regulation of DNA-templated transcription in response to stress, regulation of DNA-templated transcription in response to stress, atrichoblast differentiation
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/A 16960876 downstream_gene_variant
A/G 16960896 downstream_gene_variant
T/C 16961218 downstream_gene_variant
T/A 16961329 downstream_gene_variant
T/G 16961374 downstream_gene_variant
T/G 16961401 downstream_gene_variant
A/G 16961655 downstream_gene_variant
A/T 16961658 downstream_gene_variant
A/T 16961663 downstream_gene_variant
T/A 16961671 downstream_gene_variant
C/T 16961677 downstream_gene_variant
A/C 16961788 downstream_gene_variant
T/C 16961891 downstream_gene_variant
A/T 16962069 missense_variant p.Val66Asp
G/C 16962249 missense_variant p.Ser6Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09196.1
MLPTASTSSTALSSRFKHVEKQVSEISSQNQSDKEAKHHRYAFQTRSAVDVLDDGYQWRKYGKKIVKNNSFPRSYYRCAHRECNVKKQIQRHSNDEEIVVTTYEGTHTHPVDKSVETFDQILGNLLNNAPPTLE*


CDS Sequence:
>Vu_09196.1
ATGCTCCCTACCGCATCTACCTCATCAACAGCTTTATCCTCTCGTTTTAAACATGTTGAGAAACAGGTTTCAGAGATCTCATCTCAGAACCAAAGTGACAAGGAAGCTAAGCACCACCGATATGCATTTCAAACGAGAAGCGCTGTTGATGTTCTGGATGATGGGTACCAGTGGAGAAAATATGGGAAAAAGATAGTCAAAAACAATAGTTTTCCAAGAAGTTACTACAGGTGTGCTCATCGAGAGTGCAATGTTAAGAAACAAATCCAGCGTCATTCCAACGATGAAGAGATTGTGGTCACAACCTACGAAGGAACACATACACACCCTGTGGATAAATCAGTGGAAACCTTCGACCAGATCTTGGGCAACCTACTCAATAATGCACCTCCCACATTGGAATAG


Promoter Sequence:
>Vu_09196::LG2:16962265-16964265(-)
CCAACCCAACCCGGCCCAACCCACCATGGGTTGGTGGATAAACGTGTTGGCTCAATGGCTCACTTAATTACAATTTTTTTAAATAAAAAAAATTACAAAGTTTCTATAATATAAATCTAAACACATTTCATTCCCAAATTTCACTCTCAATATGGGTGTTTAATTAATTTTGAAAATAAGAAACTTAAATAATTTTTTCAAGCAAAAACAAAATAATAAATATTTTTTATAAAATTAAAATTAAATTTTAATAAAATAAAATTAGGTAGGTGGGTTGGTGGGTCAACCCGATCCACCTGGGTTCAACCCGCATGAACTGGGTGAAATCTGACCCGCGTAAAAAAAGTACAATTTTTTCAAACCTAACTCGATTCAAACCCGTAGTGGGCCAGATTGACCCGCGGGTTGTGACCCATTTTGACAGGTCTTATATATTCTATTGGTAAATATTATGGATTCTTCTTCTTCGTATCTCTTTCTTCTTACTTTTAGGATATTTTTTCTACATGATGACTCCCGTGGTGGGTTCACATTTGCTCGTAATGTCATGGAGAACTTGTGTTGGTTTGCAATAGTGTCGTGGTGATGACTAGGTCTGTTGGAACCACGTACGGGTTGCTTCTATGTCATTCTCTTTGACGATGTTGCGTGACAATTTCTCCAAATTTCATCTTTTTCCTTGTGCTTTCACCACCATTATTTTTGGCGAGGCTTCTCGAATCTTCATCTTCCCCTCACCAAATTAGTAGATCTAGTGGGATCATGTTGACACAGAAAGCATCGAAGATGGAGAAGAAAATTTGTACTAACACATGAATGCCTTCTCACATCGTTAAGTTGAGACTCAAGGAAAAGGAGTACATTAATTCTATTTAAAAAATATGAACTCAATTAAATAAAAAAATATATAAAAAGAAAAATGAATCATAAACTTGATCAAATTAATAATTAAAGCAAAAGAAAATAATTTAAGTTTCTTATTTTAATTTAATTTAATTTATTGATTTATGAACTTCAACTTTTAGAATACTACAACCAAATTAAATGTATGAGTTTATTTTAATCTATGCAAATATTTTTTTTCTCTATAAATACTTATAGATGTGATTATATAAATAAAGCGTAAACACAATAACTAAACAAAAAGATAAAGTTCTCACCCATACCTTTTGCATACCCTTTTTTAGTACACTCTATTGACTTTTCAAACAATAATTATCATCCATTCATAAAATACACTAAGCAATACACTTAGAAACAAATTTCTATTCATGTATGGGGCATTAGATTAAACAGTTACGAAGTATTTGATAATTGTTTGATATAAGATATGCAATAAACTTTTTATAATATTAATTATATTAAATGAAAATTATTTTATTATTAGTTGAAAGTAAAAATTATCTCAATTCATACCATATAAATTGATTTTATCTTTAATGATAAACTTTATCATATAATTTTATTCATAATTCTTTAACTATAAAACAAGTGCATCTATCTTGAGAAATAATTACTCTCCACAACATATGCCCACATCCTCTTTTGACATATAAAACCTCTTTTCTATAATTAACCGTGGCACGTAATACTCTGTTCTCAACATAGACCTTAAATTTATTAAATCCCCGAGTATTTAACAACTAACGGGTTTTTTCTGTAAGGCGGATTTACGAAGCAAATGATACACGTATTTTTTTATTTTATTTATATATCTTTTCTTTCTATTTTTCTTTTTATATGATCATATATTATATAAATCTATCATGTTTATGATTTCATAGTAAATGTACCTAAAGGAAAAGACACTATCTCTGAAGCAGTGGAATTCAATCTTGACTTGGATGCCGCCCTCATCGTTTTCCTTTTGAATGTGCATCCATCGCCATCAACTTTTGTTGATTGTGTGTTTATATATACATACAACATATCACTTTTTTTCTATGCAGCTTTCTTGCTAGTGTTAGCCAGCCTAGTTTGGAATGGAGAAACACCAAGTT


Gene Sequence:
>Vu_09196(-)
ATGCTCCCTACCGCATCTACCTCATCAACAGCTTTATCCTCTCGTTTTAAACATGTTGAGAAACAGGTTTCAGAGATCTCATCTCAGAACCAAAGTGACAAGGAAGCTAAGCACCACCGATATGCATTTCAAACGAGAAGCGCTGTTGATGTTCTGGATGATGGGTACCAGTGGAGAAAATATGGGAAAAAGATAGTCAAAAACAATAGTTTTCCAAGGTTAGTGTCACACTGCTACTTTATATTTTAAATGGAATTTTCTGTCTTTTTTCAAGCAAAGCAAGGGAATCTTAACTCTACACTTGATTCTTCAGTCTTCTTTTTAAGTGTGAGAGTCCTTCGTTCGTTTTAAATCCAAAATCTTGTAATGATTGTAAATCATCTTTTTAAATGACCTCTTCGGATAAAAATTTAGATTTAAGGAGTTGAGTTCACCAAGACATAGATTTGTGTATCTCTCTGTATTGTTCATCTCACTTATCTCACTAATATTTAAGTGAAGTAACCTAAAAACTCTCAACAAACACATTTGAACTCACTCTTCAAAACTTTATATGATTTCAAAAATATAAAATAAAAAATCTCACAGGCAATAATTTAGGATGCTGTTTTTAATTTAGAAAATAGTATGTAGTGTATGACTTTTACTACTGAATATACTTAATAGTAGGAGTAGTGAAATCATGGTATAATGCATTTTCTATACAATATATCATCTCCAGGCTGATTTGTGTCTCTTTTTAAAATGGTCCTCCTTATATGTACTCATTGATAAACCAATTTTAATGCATTAGAAGTCTATTATCTTGATTTATTACAAGTCGAGTTAAAAATGATTCCGTTAAATTTGATTTATTTTTTGGTGAATTAAAAAACTTATCATTTGGCTTAAACTACGATAAATTTGTAGGTTAGGTAAATTAGTTTATTTAAAAAAATTTAACTCTTCTAATTTATTTTATATATTCATGAAAGTACTAATCAAAATAAATTAACTCTACTATTTTTTTATATCAATACAATGTTTTTATCTATTTCAACAAATATTATTATAATAATACTTAGTGAATATCAACTCACGTAATTTAGTAAAAAAAAAATTAAACATTCAAACTATTCAAATATTATTAATAAAACATTTTAGTCTTTAAAAGAATTAATCTACGTAATTAGGTAAATAATAATAATAAAATTTTATGAAAAAATTGTGAAAAAATAATAAAAGATTATTTTTTATAGACTGAGTCAAACCACTTCAATCACTTTCAATTCCGTTTAATTTTAAGCATTCAATTTAACCTATAGTTAAAAATCTTTGTTTTTTTCAACTTAACTTAATTCGAATCCTTAGTTGAATTTTGTTAAGAGTTTAAACCTACTTGGACATCTCAAATTCTACGTGCTACCAAACAATAAAGTAAGGTTAGCATGAATAGGAAATTTGCAATTCTGCATTTTGATTTTTTTGCATTTCTAATCGGTCTTGGGTTGATTATGCATACATTAATTACAATTTTATTTTGCTTTTTCAGAAGTTACTACAGGTGTGCTCATCGAGAGTGCAATGTTAAGAAACAAATCCAGCGTCATTCCAACGATGAAGAGATTGTGGTCACAACCTACGAAGGAACACATACACACCCTGTGGATAAATCAGTGGAAACCTTCGACCAGATCTTGGGCAACCTACTCAATAATGCACCTCCCACATTGGAATAG