Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09366 LG2 22000175 22001905 PREDICTED: trihelix transcription factor GTL1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   mucilage biosynthetic process involved in seed coat development, mucilage pectin biosynthetic process, regulation of transcription, DNA-templated, mucilage pectin biosynthetic process, mucilage pectin biosynthetic process, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, regulation of transcription, DNA-templated, mucilage pectin biosynthetic process, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, glucosinolate metabolic process, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, regulation of transcription, DNA-templated, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, glucosinolate metabolic process, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, glucosinolate metabolic process, mucilage biosynthetic process involved in seed coat development, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/T 22000456 synonymous_variant p.Val368Val
G/A 22000571 missense_variant p.Ala330Val
C/T 22000643 missense_variant p.Arg306Lys
T/G 22000741 stop_lost p.Ter273Cysext*?
A/T 22001034 missense_variant p.Trp176Arg
A/G 22001085 missense_variant p.Cys159Arg
T/A 22001086 synonymous_variant p.Ile158Ile
T/A 22001097 stop_gained p.Arg155*
A/T 22001124 missense_variant p.Trp146Arg
G/A 22001266 synonymous_variant p.Pro98Pro
C/T,* 22001305 synonymous_variant p.Leu85Leu
T/A 22001404 synonymous_variant p.Pro52Pro
C/G 22001409 missense_variant p.Glu51Gln
G/T 22001429 missense_variant p.Thr44Lys
G/A 22001786 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09366.1
MLEVSASPATPLANPEGGAAAVSEKLAELGYNRSSKKCKEKFENIYKYHRRTKEGRCGKSNGSKTYRFFEQLEALEGHHSLPTPSVSAPETATTTTTTHVPDNNTNVDVILDAVPCSVSAYVGEHSSSTTSCSGKGFRKRKLTQFLDGLMREVIEKQDMLQRKFVEVLEKCEKDRMAREEAWKKEELALIKKERELLAQERSIAAAKDEVVLAFLRKFTQVEGVVQLLEKIQGQNNGHRDMQQSGNINAAANGGGGGDSDVSDMDKRECGNNLSVRNFVHMSSSRWPKDEVEALIRLRTELDVQSQGNNNSSNGVSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEVLYSKKPKRADVKDFGKELKPEELLLHIMESQSQEERQAQQQQVQSHSSSEDGEKDDRDQREGDEEDQNGFQNVMLENSPSRAIMS*


CDS Sequence:
>Vu_09366.1
ATGCTGGAAGTCTCTGCTTCACCGGCAACTCCTCTTGCCAACCCGGAGGGAGGCGCCGCGGCGGTCTCCGAGAAATTAGCGGAGCTAGGTTATAACAGGAGTTCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTACAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTTCCGACTCCCTCTGTAAGCGCCCCAGAAACAGCAACGACGACGACGACGACCCACGTGCCCGACAACAACACCAACGTCGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGCTCCGGTAAGGGGTTTAGGAAGAGGAAGCTGACGCAGTTTCTGGATGGGTTGATGAGGGAAGTGATAGAGAAGCAGGATATGCTGCAGAGGAAGTTCGTGGAGGTGTTGGAGAAGTGCGAGAAGGATCGAATGGCAAGGGAGGAAGCGTGGAAGAAGGAGGAGCTGGCGCTGATTAAGAAAGAGCGCGAGCTTCTGGCTCAGGAACGCTCCATCGCCGCGGCTAAAGATGAAGTCGTCCTTGCTTTTCTAAGAAAGTTCACCCAAGTTGAAGGCGTGGTGCAGTTGCTGGAGAAAATCCAGGGTCAAAACAACGGGCACAGGGACATGCAACAAAGTGGGAATATCAATGCTGCGGCTAATGGAGGTGGTGGTGGTGATAGTGATGTGAGTGATATGGATAAGCGAGAGTGTGGGAATAATCTGAGTGTTAGGAATTTCGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTGAGGACTGAACTTGATGTGCAGTCTCAGGGGAACAATAATAGCAGTAATGGTGTGTCGAAGGGGCCACTTTGGGAGGACATATCTTCGGCCATGAAGGGCCTTGGCTACGAACGCAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAAACCTGTCCCTATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCCAAGAGGGCTGATGTAAAGGATTTTGGGAAGGAGTTGAAGCCCGAGGAGCTGTTGTTGCATATCATGGAGAGTCAAAGTCAAGAAGAGAGACAAGCGCAGCAACAACAGGTACAGAGTCACTCATCATCCGAAGATGGGGAGAAAGATGATAGGGATCAGCGTGAGGGAGATGAAGAAGATCAAAATGGGTTTCAGAATGTGATGCTTGAAAATAGTCCTTCCAGAGCAATCATGAGTTAA


Promoter Sequence:
>Vu_09366::LG2:22001905-22003905(-)
TATATATATATATATATTAAAAGAATATTAATTATATATATTAAAAATTGTTTTTTTAAAAGAAACTTCTAAGATATAAGAAGAAAGGAAAAAAAGAAAGAAAAATAAAATAAAAGAGAACAAGATGAAAAAGAAATAAAATGAAAATCACAATATAATTAAATTTATATGACAATCATGAATAAAGTACTACATCACAGATACTACTAAAAACACATGTACTTTTTTCTCTCTCTCTATATATATATATATCCTTTTACTTTATGATTATAAAAAAAATTATTGTAATTATTACTAAAATAAAAATGTTATTAAATCTAAAAAAATCTTTTTTTCTTAAAAGAATAACTATAAAAGTTAAATATAAATTTTAAAAGATAAAGTAATTTATAGTAGTAAGATAAAAACGATAATGAAATAAAAAAAGAATTCGATTTATATGTAAATATGAAAAGTTTAGGATGTAGTTTGGTAGGTAGTGGGTTGCAATGCGTTTGAATGTTGGCAGGAGCGTGGTGGTACGGTGGCCAAAGATAAGAAGGGTGGTCAAGCTTCTATATTAGTTTTGTCTATGTATTAATTTTTCAAAGTGAAATTTTGGGAGTTTTGGTTTAGAGGGCTCTTAAAGACGAAATTAACGTTAGCTAAAATAGTTGAAGTGTTAATGTAAGACGTAAGACATGATGTTGTTTAAATGTAAAATTTAGTTAAAATTCTCTTGTGGTGCGTGAGAGGAGGTGATAAAGATGAAAGGGAAAAAGAGTTTAAGAAAACGACGCGACTAGACCTCCTATCGCGTGAGGAGTGTTGGAGAGGTTTACGCAACTCAATAAATCAATGTTGTCGTATCCTACTGTAAACCATGGATCCCATTTTCAAAATCAAAACCCAAACTCACTCTACCAAACAATAAGAACCACGCCGATAATTTGGACCGTCTCAAATATATCCGCTCTTTACTTCTTAAATTCCTCACTTTATACTTACGACAAAACCAAAACCTCCACTTTCATTTTTTTTGTCGCGGCTTTTACTACATGCTAACATGCTTAATTGTCCATTTCCACACTTACCAACCTATACGCGTTTATATTCGTTATTTAACGAACTCGGCCTTATAAGTCATATAACATACAGGATAATTTTGAAAACATATTTGAATTTCAATTTCTAATTGAAGGGGGTATTTATTTTTCTTGGTAAATTCTATCCCATAAACCCGAGACTCGTGCATTGGCGCTCTGTGACACCCAATTGTGCCCTGATTGGCGCAATATATATTTTTTTTATAAAAAGGAGTAGGGTGAGGATATTTTCGTTTTTCACCGACTCGGAAAAATGCGGTGGCCGCAACTCGTAAGTTTACGGCACACGTAATTGAGTTGTGGTATGTGTGGCGTGGGGCAAAGCCAGCGGAGTGACAGAAACGTACAGAACAAGAATGTGGGCTCTGTGGGCCTTCCCTTATGAACCCAATTCCATTACTACCACACAATAAAACAAACCCACTTTTCCTCCCATCACCAAGTTATCTCATTTTACCCTAGAAAAGCCCACAAATATTGACTTTAGCTGTCAATTTTTAATTTCCCTCCCTGTCTGCAAAGGGTCAAACTTACACAAGTGGGAAATTTTGTAATGAACCATCAACCAATGCCATGCCACCACGTATGGACCTCTACCTCCATGGAATCTATCCGATCGTATCCATTTCACTTCTTTTGAATTTTAAACCTTTTCTTTTCTTCTTATTATTATTCACCTGTCCATATGCTCGCCCTTTTTAAACTTGTAAGTAACGACAATGGTTAGTAGACCTTGAAATTTGAAATAGCACAAACAATTCAAATCCCCTACATCAAAACAAACACTCAACACAACCCCAGTTATTACAGTACCTTTATTTTTATTTTTCCCTGACAAGGTTTCACCAAGGTTGTTTTTTTTCCTCTCTTGCCCCCACCCTCAAGTGTTTCCTAGCTGTAACTACGGTGAAACCG


Gene Sequence:
>Vu_09366(-)
ATGCTGGAAGTCTCTGCTTCACCGGCAACTCCTCTTGCCAACCCGGAGGGAGGCGCCGCGGCGGTCTCCGAGTGGCTCAAAGCGGAGGACGGCGAAGCCGGTGACCGGAATTCCGCCGCCAGTCGATGGCCTAAAGAGGAAACAATGGCTTTGCTCAAGATAAGGTCTGACATGGACGTTGCTTTCAGGGATACAAACCCCAAAGCCCCTCTCTGGGACCAAGTCTCAAAGTAAGTCCCTCTTCGTTTCCCCTGGAATCCCCATTATTCTCAAGCTTATTCCCTAATCAGTGATGCTAGTGTTACAACGATACTGTATACATTCTAGCTTGACATAGTTAAGTTGAACCATTTCTTTTTGTCTGTGTGATAATAACGTGGTGATTGAATTAATTTGAAAATCTTTTGTATATTCAGGAAATTAGCGGAGCTAGGTTATAACAGGAGTTCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTACAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTTCCGACTCCCTCTGTAAGCGCCCCAGAAACAGCAACGACGACGACGACGACCCACGTGCCCGACAACAACACCAACGTCGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGCTCCGGTAAGGGGTTTAGGAAGAGGAAGCTGACGCAGTTTCTGGATGGGTTGATGAGGGAAGTGATAGAGAAGCAGGATATGCTGCAGAGGAAGTTCGTGGAGGTGTTGGAGAAGTGCGAGAAGGATCGAATGGCAAGGGAGGAAGCGTGGAAGAAGGAGGAGCTGGCGCTGATTAAGAAAGAGCGCGAGCTTCTGGCTCAGGAACGCTCCATCGCCGCGGCTAAAGATGAAGTCGTCCTTGCTTTTCTAAGAAAGTTCACCCAAGTTGAAGGCGTGGTGCAGTTGCTGGAGAAAATCCAGGGTCAAAACAACGGGCACAGGGACATGCAACAAAGTGGGAATATCAATGCTGCGGCTAATGGAGGTGGTGGTGGTGATAGTGATGTGAGTGATATGGATAAGCGAGAGTGTGGGAATAATCTGAGTGTTAGGAATTTCGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTGAGGACTGAACTTGATGTGCAGTCTCAGGGGAACAATAATAGCAGTAATGGTGTGTCGAAGGGGCCACTTTGGGAGGACATATCTTCGGCCATGAAGGGCCTTGGCTACGAACGCAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAAACCTGTCCCTATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCCAAGAGGGCTGATGTAAAGGATTTTGGGAAGGAGTTGAAGCCCGAGGAGCTGTTGTTGCATATCATGGAGAGTCAAAGTCAAGAAGAGAGACAAGCGCAGCAACAACAGGTACAGAGTCACTCATCATCCGAAGATGGGGAGAAAGATGATAGGGATCAGCGTGAGGGAGATGAAGAAGATCAAAATGGGTTTCAGAATGTGATGCTTGAAAATAGTCCTTCCAGAGCAATCATGAGTTAA