Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09372 LG2 22112777 22115403 PREDICTED: serine/threonine-protein kinase ATG1t isoform X1
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Annotations  
category   relationship type   keyword
Biological Process   involved in   peptidyl-serine phosphorylation, autophagy, autophagy, protein phosphorylation, autophagy, protein phosphorylation, protein phosphorylation, peptidyl-serine phosphorylation, peptidyl-serine phosphorylation, phosphorylation, phosphorylation
Cellular Component   is active in   cytoplasm
Molecular Function   enables   protein serine/threonine kinase activity, ATP binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, nucleic acid binding, protein serine/threonine kinase activity, ATP binding
SNP Position Effect Amino acid change
A/G 22113165 upstream_gene_variant
C/A 22113251 splice_region_variant&intron_variant
C/A 22113266 missense_variant p.Leu94Met
C/G 22113298 synonymous_variant p.Gly104Gly
T/G 22113333 missense_variant p.Val116Gly
A/G 22113336 missense_variant p.Gln117Arg
G/A 22113351 missense_variant p.Arg122Lys
A/G 22113366 missense_variant p.Gln127Arg
T/C 22113369 missense_variant&splice_region_variant p.Leu128Pro
G/T 22113385 upstream_gene_variant
G/T 22113393 upstream_gene_variant
T/G 22113462 missense_variant p.Leu133Arg
G/A 22113479 missense_variant p.Gly139Ser
C/A 22113481 synonymous_variant p.Gly139Gly
G/T 22113494 missense_variant p.Asp144Tyr
T/C 22113543 upstream_gene_variant
A/G 22113551 upstream_gene_variant
T/A 22113560 upstream_gene_variant
G/T 22113568 upstream_gene_variant
G/A,* 22113634 upstream_gene_variant
C/T 22113718 upstream_gene_variant
A/T 22113841 upstream_gene_variant
T/A 22113893 upstream_gene_variant
T/C 22113987 upstream_gene_variant
T/A 22114058 upstream_gene_variant
T/G 22114106 upstream_gene_variant
A/G 22114288 upstream_gene_variant
A/T 22114443 upstream_gene_variant
C/A 22114532 missense_variant p.Arg173Ser
A/T 22114623 splice_region_variant&intron_variant
C/T 22114712 missense_variant p.Leu211Phe
A/T 22115093 synonymous_variant p.Leu280Leu
T/C 22115150 3_prime_UTR_variant
C/T 22115221 3_prime_UTR_variant
A/G 22115245 3_prime_UTR_variant
T/A 22115250 3_prime_UTR_variant
T/C,* 22115323 3_prime_UTR_variant
A/G 22115367 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09372.1
MECEGKFREKLVKVVGVGKLCYLLKAKIGEGSYSLVWRAEQRQTGDDVAVKQVFLSKLNPRLKACLDCEINFLSSVNHPNIIRLLHFFQDDGCLYLVLEFCAGGNLASYIRSHGRVQQQTARKFMHQLGSGLLVLHSHGIIHRDLKPENILLSSHEGDAKLKIADFGLSRTVRPGEYAETVCGSPLYMAPEVLQFQRYDDKADMWSVGAILFELLNGYPPFNGKNSVQVLKNIRSCNCLPFSQLILSGLDPDCLDICSKLLHLNPVERLSVDEFYWHSFLQRKVRRT*


CDS Sequence:
>Vu_09372.1
ATGGAATGCGAAGGGAAATTCAGAGAGAAATTGGTGAAGGTGGTGGGAGTGGGAAAACTCTGCTATCTTTTGAAAGCGAAAATCGGAGAGGGTTCATACTCCTTAGTGTGGAGAGCGGAGCAGAGACAAACCGGCGATGACGTGGCGGTGAAGCAGGTCTTCCTCTCCAAACTCAACCCTCGCCTCAAGGCTTGTTTGGATTGCGAGATCAACTTCTTGTCCTCTGTTAACCACCCCAATATTATTCGTCTTCTTCACTTCTTCCAGGATGATGGATGTCTGTACCTTGTCCTTGAGTTTTGTGCTGGAGGCAACCTAGCTTCTTATATTCGAAGCCATGGAAGAGTTCAACAACAAACTGCTAGAAAATTCATGCACCAGCTTGGCTCTGGTCTCCTAGTATTGCACTCTCACGGCATCATTCACAGAGACTTGAAACCGGAGAACATTTTGCTATCAAGCCATGAGGGTGATGCAAAGCTAAAGATAGCCGATTTTGGTCTCTCAAGGACTGTGCGCCCAGGTGAATATGCGGAGACAGTTTGTGGTTCTCCGTTGTACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGACAAGGCAGACATGTGGAGTGTTGGAGCTATTCTTTTTGAGCTTCTAAATGGATACCCACCTTTTAATGGCAAAAATAGTGTTCAGGTGCTGAAAAACATCAGATCCTGCAACTGTCTTCCATTTTCTCAACTTATTCTTTCAGGATTGGATCCGGACTGTCTTGATATTTGTTCAAAGCTACTACACTTAAATCCAGTGGAACGCCTATCTGTTGATGAATTTTATTGGCATAGTTTTCTACAAAGAAAAGTGAGGAGAACATGA


Promoter Sequence:
>Vu_09372::LG2:22110777-22112777(+)
TTAGGACTTTTATCAAACACTTTGTAAATTAAAAGTGCAGAGATAGAGAAAATCACACGAAATGTTTTATCCTGATTCGAATCAAAAAGATTCTACGTCCAGTCGTTAATCACTATAAACAGTGATTAACCTTTTTCACTAAAATATAGTTTTACAAATTACAATAAGATAAACAAATATTAAAGAACAGAAAACACCTTCCTTCGACAAACAAACGGAAGAACTTCAGCTCAATTAACTTGAAGAGAACTGCTTCGACCTTATACACACTAAGCGCAAGCTTCTCTTTTTCACAAAACTTGATTTGAGCACACTAACACTTGAGAACTTCCGCAAACTTTTTCTGTATTCTCAAATAACTTAGTTTAAACCTATAAGAGGTTTAGTAAAATGTATATATACCCCAGGGGTTAGAAACTGAAAAGGCAACTCCCAACTGTCAGTGATAATCGATTATATCAAGTGATAATCGATTATTTGTGTCCGTTATGGGGTTTTCAAAAGGTGATAATTGATTATCTTGAGGAATAATCGATTATTTGCGCAACTTGGACAATATTGAATCAGACAAAGATAATCAATTATTTTGAGCAATAATCGATTATTTACAAGAGCAATTATTTTCTAAACAGGCTCGTGATAATTGATTATTACACCAAATAATCGATTATCTGCGCAAAGACTCTCTAAACAGGAAAACTTCAAAGTGTTCTTACATCGTCAAAGTTATTCCTATACAATTTCTTCTACAAAATGCTTTGAATGTAAATACAACAAGAGTCTTCAATTCTTCATCTTGTAACATCATCAAAACTTTAATAGCTTCAAGATACCAATGCTCCCCATTGGTAACACTGACGGTGGTGGTGGAAAGGGAGAGGATGCGTGAAGAAGCTTCGTGATTTGGGTCTGGGTGTTGTGCGTTTTTTGGGTTTGATTATTTGTGGGTTTCTGGTGATCTCTGCGACAGTTGGTTGTGGTGTGGCGGCAAGGGTGACGCAATTTGCTCCATCGTGCAAGTTTTCAGTGTGGTGGTTGCTATGGTTGATGGTGATGCTTAGGCTAGGTGGAGTATGGTTGAAGGTCGTGGTGTGGTGGTTTCTACGACGGCTAGCAGTGACCATGAGGGTGGCGACATAAGGAAGGAGAAAGGTTTCTTTTTGGAGAATATGATACTGACGTAACAACAGTTGTAGCAATGGTGATGAGTTGACATGTTCTGAATTTAATACACAATGACATGTCATCTAAAAAAATTACATCTCAACATCTGTTAGCATTGTCTGTCAACACTTAACGAAAATGACTTAATTATTACGATTTTACAAAATTTAAAACCAAATTGAGACGGTTTTCAACAACGACTCACTTGATATTTCATCCGAAGGTTTAAAGCAAATTTTTTTCAACTTATAAAACTGTCTATGACTATCAATTATAGATAATTATAAATTAAATATTGTTAAAAATACCAATTGCACATACAGAAAGACTACTTAAAAATATTTCTAATCCCATACGTAATTTTTCCTATACCCTTTTACTCATAAAAGTACGAAGTTTAGAAAGAAAAAAAAACATTGTATTAATATGCTGGTGGAAGTGCTTATTAAACAATTTTTTCCTCTTTCTATCTCAATTTAATACATTCTCACAAACTATTTTTTTTTTCATCACAAATTTTATTTTATATGAAATATTTTTCTTTGTATACTTTTTACTGGCGAAGTAGATTTTTATTTTTGAGAAGGAGACTTGCTTCCTCTGCAAAACTGGAAGGTTATATGGATGCAATCACACTTATAAAAGTAAGTTGAAATTCATTTCATCCACTCGGTTCATTAATAGAAAAAAGTTTTAAATTAGGCTGTAGTTGATAAGACTAAATTAATAAAAACACTAAATTTTAATACTTGGATGCAATATGAAAAAGAAAATTACAATTATGACAATATAGTTTGAGTTTTTCCAAAATTAGAAGTTTCTACAGGTAGAAAACG


Gene Sequence:
>Vu_09372(+)
GAGGATTGGGAAGAGAAGAAGAAAGAAGGGTCATTGAGGAGGAATGGAATGCGAAGGGAAATTCAGAGAGAAATTGGTGAAGGTGGTGGGAGTGGGAAAACTCTGCTATCTTTTGAAAGCGAAAATCGGAGAGGGTTCATACTCCTTAGTGTGGAGAGCGGAGCAGAGACAAACCGGCGATGACGTGGCGGTGAAGCAGGTCTTCCTCTCCAAACTCAACCCTCGCCTCAAGGCTTGTTTGGATTGCGAGATCAACTTCTTGTCCTCTGTTAACCACCCCAATATTATTCGTCTTCTTCACTTCTTCCAGGTTCTATTTTCTTTCCCGTTTTCGTTGCTCTGGTGGTTTCCCCCCCTTTTATTTAGTAACCCTTTTTTGTTAATTTTGATTTTGAAACCGAATAAGTTGAAAAGATTATGACTTTATTTGTTGGGAGGGTTGACGTTGGTTGAAGCTTGTTTTTTTCTGGTGGTCAGGATGATGGATGTCTGTACCTTGTCCTTGAGTTTTGTGCTGGAGGCAACCTAGCTTCTTATATTCGAAGCCATGGAAGAGTTCAACAACAAACTGCTAGAAAATTCATGCACCAGCTTGGTAACTTTTATTTGCATTTTTGGTTTGTTGTAATACTGCCTTTGATGGCACTATAACATGAACTGAAGTTTGATGCAGGCTCTGGTCTCCTAGTATTGCACTCTCACGGCATCATTCACAGAGACTTGAAACCGGAGGTAGGAATGTGATGTTTGTTTTCCGGACATAGAATTGGGTTCAGTACATTTTCAAAAATGGAAAAGAGCTTCAGTAGTTTTTGTTACTAATTTTGTTCAAAATGCTTCAAAGTGGAATTTATGTGGAGACGATTGTTTCAGATTAATTAATTTCATCTATGGGTAAATATAAATATACAGAGTGCAATCAGTTATTGTCGAATTTTTCACTGGAATAAATGAATATGAGGGCACTACAGTTAAGTTAAATATTTTGATCACGTTCTTTTGCTTAGTTTTGAATTTGTAAGTTTACAACATTAACTACCAGTTTTGAATTTGGAACTTTTACTATTGAGCAGGCCTTTTAATTTTGTTATTCTGCTAGTAGCAACTATTCAAACTTAGAAGCGGTTCAGAATTTAAGACTACTTGCCTCTTAAATAATTGAAAAATGTTAAACTAGGAATATGCTTTTGTGAAACAACTTATAGACAATTTGAAGTAAAATTAGTTGTGTTTTGTTAATTACCACTTACTCTTCAAACCATACTGTTTCTCATTCCAAGTTTGGTTGATTGTGACGCATTTGTACAGAATTTCATACAAGAGCTTTTTTCTAAATAACTCTGATGTAAATACCCTACATTAAACTGATGACAAAACTTGAAATGATTTCAGGCAAGTCTGTTAAGGGCCAAAATTCTGGAAAAACTATAAAAAGAGGAAATTACAGACCTTTTCTCATAATGGCTTGTTCTAGTTGCATGGAAAATGATTCTCTTATTGATAATCAATCTATAGTGACTATCATTTTGAGATCAGTAGCAAATTTTGTTTGCTTTGGTGCTATTGTTAAACCAGAACATTTTGCTATCAAGCCATGAGGGTGATGCAAAGCTAAAGATAGCCGATTTTGGTCTCTCAAGGTACTTTGTTGGTTTAGGGGAATGAAAAGGGACAGGAAAAAAATTTATTCATTTTGTTTTCCATATATTATTCTCACCAAATTGACAGCATTTTCATAAAATGTGGAGGACTGTGCGCCCAGGTGAATATGCGGAGACAGTTTGTGGTTCTCCGTTGTACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGACAAGGTATAAACTGTTCTTTCTTTCAACATTAGCTATGTTTGTTTACTGAAATATACTTAATTAATATAGGCAGACATGTGGAGTGTTGGAGCTATTCTTTTTGAGCTTCTAAATGGATACCCACCTTTTAATGGCAAAAATAGTGTTCAGGTAGCACCATAAATTTGAACTACTAATATTAAAATATATCTGTCCGTGACCACTGCTAATGCAAAATGCTGATTTCAGGTGCTGAAAAACATCAGATCCTGCAACTGTCTTCCATTTTCTCAACTTATTCTTTCAGGATTGGATCCGGACTGTCTTGATATTTGTTCAAAGCTACTACACTTAAATCCAGGTTGTGCACTTTTTTTTTATTTAACATGTTTTCTTATTCTTTCAATTTCCAGTGCTCATCAGTTTATTTGTGAACCATTCTCACTATGTTGCAGTGGAACGCCTATCTGTTGATGAATTTTATTGGCATAGTTTTCTACAAAGAAAAGTGAGGAGAACATGACAGCAATACCACCATAGTTTTCACTATCTTTCTATAGCCGCTGTCTTCAAAGCTACCAAAATCATCAATAGAAGTTAATGTCATTGCCGTTTCATTCCCAACTCTGTTTCCCCTCTCTGGACATTGGATAAGTGTATATATATATATATGTATAAACTTGTACTGTTTTCTTTATTGCTTGCAACTTGTGAGCTTAGAAAAATTATTTTTTAGTTTCAATTCAATGCGCCTAGAGTTGTGGGCCTATGTAACGCTTTTTATTGTGATATTTAATCCTTTGATGTTG