Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09878 LG2 37656544 37659650 PREDICTED: serine/threonine-protein kinase Nek3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryo development ending in seed dormancy, cellularization, radial microtubular system formation, phragmoplast assembly, endosperm cellularization, radial microtubular system formation, protein phosphorylation, protein phosphorylation, embryo development ending in seed dormancy, protein phosphorylation, phragmoplast assembly, pollen development, cytokinesis by cell plate formation, microsporogenesis, endosperm cellularization, endosperm cellularization, cytokinesis by cell plate formation, cytokinesis by cell plate formation, cellularization, embryo development ending in seed dormancy, microsporogenesis, cytokinesis by cell plate formation, phragmoplast assembly, embryo development ending in seed dormancy, endosperm cellularization, microsporogenesis, microsporogenesis, embryo development ending in seed dormancy
Cellular Component   is active in   microtubule
Cellular Component   located in   spindle, preprophase band, spindle, plasmodesma, plasma membrane, phragmoplast, preprophase band
Molecular Function   enables   microtubule binding
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
T/G 37656600 splice_region_variant&intron_variant
T/C 37656622 upstream_gene_variant
T/C 37656824 upstream_gene_variant
A/G 37656827 upstream_gene_variant
C/T 37656863 splice_region_variant&intron_variant
A/C 37656987 upstream_gene_variant
G/A 37657117 upstream_gene_variant
C/T 37657143 upstream_gene_variant
T/A 37657147 upstream_gene_variant
G/C 37657198 upstream_gene_variant
T/A 37657214 upstream_gene_variant
G/T 37657291 upstream_gene_variant
G/A 37657359 synonymous_variant p.Pro76Pro
G/T 37657445 missense_variant p.Arg105Ile
A/G 37657549 missense_variant p.Asn140Asp
C/G 37657573 missense_variant p.Pro148Ala
G/A 37657616 stop_gained p.Trp162*
C/T 37657670 missense_variant p.Ala180Val
G/A 37657708 missense_variant p.Ala193Thr
A/T 37657724 missense_variant p.Asn198Ile
A/C 37657734 splice_region_variant&intron_variant
G/A 37657744 upstream_gene_variant
T/A 37657761 upstream_gene_variant
C/T 37657765 upstream_gene_variant
G/A 37657831 upstream_gene_variant
C/T 37657844 upstream_gene_variant
A/T 37657902 upstream_gene_variant
T/A 37657940 upstream_gene_variant
A/C 37657943 upstream_gene_variant
C/T 37657949 upstream_gene_variant
G/A 37657963 upstream_gene_variant
C/A 37657997 upstream_gene_variant
T/A 37658009 upstream_gene_variant
G/A 37658068 upstream_gene_variant
T/G 37658084 upstream_gene_variant
G/C 37658085 upstream_gene_variant
G/A 37658091 splice_region_variant&intron_variant
G/A 37658109 missense_variant p.Glu205Lys
C/T 37658119 missense_variant p.Ala208Val
T/C,* 37658128 missense_variant p.Leu211Pro
A/T,* 37658208 missense_variant p.Met238Leu
C/T,* 37658236 missense_variant p.Ala247Val
C/G,* 37658260 missense_variant p.Pro255Arg
G/A,C 37658274 missense_variant p.Ala260Thr
G/A 37658283 missense_variant p.Ala263Thr
C/A 37658284 missense_variant p.Ala263Glu
C/T 37658332 missense_variant p.Pro279Leu
G/A 37658349 missense_variant p.Asp285Asn
G/A,T 37658355 missense_variant p.Ala287Thr
G/A 37658375 synonymous_variant p.Glu293Glu
C/G 37658423 missense_variant p.Asn309Lys
A/G,* 37658457 missense_variant p.Asn321Asp
G/A,* 37658472 missense_variant p.Ala326Thr
C/A,* 37658482 missense_variant p.Ala329Glu
C/A,* 37658491 missense_variant p.Ala332Glu
C/T,* 37658498 synonymous_variant p.Leu334Leu
A/C 37658592 missense_variant p.Asn366His
C/T 37658611 missense_variant p.Pro372Leu
G/A 37658634 missense_variant p.Ala380Thr
G/A 37658807 synonymous_variant p.Glu437Glu
A/G,* 37658829 missense_variant p.Thr445Ala
G/C,* 37658895 missense_variant p.Ala467Pro
C/*,T 37658899 missense_variant p.Pro468Leu
A/*,G 37658901 missense_variant p.Thr469Ala
A/G,* 37658922 missense_variant p.Thr476Ala
A/T,* 37658938 missense_variant p.Asn481Ile
G/T,* 37658942 missense_variant p.Glu482Asp
A/C,* 37658948 synonymous_variant p.Ala484Ala
G/C,* 37658951 missense_variant p.Glu485Asp
T/*,C 37658963 synonymous_variant p.Asp489Asp
G/A 37658973 missense_variant p.Ala493Thr
G/A 37659030 missense_variant p.Glu512Lys
G/A 37659057 missense_variant p.Ala521Thr
C/G 37659058 missense_variant p.Ala521Gly
G/A 37659093 missense_variant p.Glu533Lys
A/T 37659097 missense_variant p.Asn534Ile
G/C,* 37659115 missense_variant p.Arg540Pro
A/G,* 37659138 missense_variant p.Thr548Ala
G/A 37659210 missense_variant p.Ala572Thr
A/C 37659245 missense_variant p.Glu583Asp
G/A 37659246 missense_variant p.Ala584Thr
G/A 37659267 missense_variant p.Asp591Asn
G/C 37659339 missense_variant p.Asp615His
G/A 37659345 missense_variant p.Ala617Thr
G/A 37659372 missense_variant p.Glu626Lys
G/A 37659399 missense_variant p.Ala635Thr
T/A 37659416 synonymous_variant p.Leu640Leu
A/G 37659451 missense_variant p.Asp652Gly
C/A 37659452 missense_variant p.Asp652Glu
C/A,G 37659457 missense_variant p.Pro654His
A/T 37659496 missense_variant p.Asn667Ile
T/A 37659541 missense_variant p.Leu682Gln
T/A,* 37659563 synonymous_variant p.Thr689Thr
G/A 37659602 synonymous_variant p.Leu702Leu
C/T 37659611 synonymous_variant p.Asn705Asn
A/T 37659627 missense_variant p.Thr711Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09878.1
MNELQDSMLSEESIHDLAFLHSKGIIHYNIKPSNILFDEYGCAKLCDFGSAKELKNISTHSSSVPLATRGTPCYMAPELFEDVGIYSYASDLWALGCALYECFARRPPFMGREYNNIKSILSDPIPPLCGHPSQHFVDLINSLLVKNPPERIQWPELCSHPFWRTKIPPVTLPAFDLNENAEDEAPAAQPADMANLDFNENNAEDEAPAVQLADMANLDFNENAENAEDEAPAAQPADMANLDFNENAENAEDEAPAAQPADMANLDFIENAENAEDEAPAAQPADMAYLDFNENAEDEAPAAQPADMANLDFIENAENDENEAPAAQPADMANLDFNENAENAEDEAPAAQPTDMANLDFIENAENAENEAPAAQPADMANLDFNENVENAEDEAPAAQPTDMANLDFIENAENAEDEALAAQPEDVTTLDFNENEENVEDQAPTAQPADMANLDFIENAENAEDEAPTAQPADMTNLDFNENAENAEDEAPAAQPADMANLDCIENAENVEDEAPAAQPADMANFDFNENAENAEDEARAAQPADMTNLDFNENAENAKEEAPAAQPADMANLDFIENAEDEAPTAQPADMAHLDFNENAENAKDEAPAAQPADMANLDFIENAEDEAPAAQPADMANLDFIENAENAEDDAPAAQPADMANLDFNENAEMPKMKHLLLNLQIWQTLTLLRMPRMPKMKHLLLNMQIWQTLILIRM*


CDS Sequence:
>Vu_09878.1
ATGAACGAATTGCAGGATAGTATGCTTTCCGAAGAGTCTATTCATGACCTTGCGTTTTTACATTCAAAAGGAATCATTCACTATAATATTAAACCATCGAATATTCTATTCGATGAATATGGATGCGCAAAGTTATGTGATTTTGGATCGGCAAAAGAGTTGAAAAATATATCAACTCATTCTTCCTCGGTACCACTTGCAACACGCGGAACACCCTGTTACATGGCTCCGGAACTTTTTGAAGATGTTGGAATCTATTCATACGCATCAGATTTATGGGCGCTAGGCTGTGCCTTATATGAGTGTTTTGCAAGAAGACCGCCCTTTATGGGAAGAGAATATAATAATATAAAATCCATTCTTTCAGATCCTATTCCACCTCTTTGTGGTCATCCCAGTCAACATTTTGTTGATTTAATCAATTCTCTGTTGGTAAAGAATCCACCAGAAAGAATACAGTGGCCTGAACTTTGTTCACATCCGTTCTGGAGAACAAAAATTCCTCCTGTGACTCTGCCTGCATTTGATTTGAATGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATAATGCCGAAGATGAAGCACCTGCTGTTCAACTTGCAGATATGGCAAACCTTGATTTTAATGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCATACCTTGATTTTAATGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGACGAAAATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTCGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTACAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAAATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGTAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTACAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACTTGCTGCTCAACCTGAAGATGTGACAACCCTTGATTTTAATGAGAATGAAGAGAATGTCGAAGATCAAGCACCTACTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAAAATGCCGAGAATGCCGAAGATGAAGCACCTACTGCTCAACCTGCAGATATGACAAACCTTGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTGTATTGAGAATGCCGAGAATGTCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACTTTGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACGTGCTGCTCAACCTGCAGATATGACAAACCTTGATTTTAATGAGAATGCAGAGAATGCCAAAGAAGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAAGATGAAGCACCTACTGCTCAACCTGCAGATATGGCACACCTTGATTTTAATGAGAATGCAGAGAATGCCAAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGACGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGCAGAGATGCCGAAGATGAAGCACCTGCTGCTCAACCTACAGATATGGCAAACCTTGACTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACATGCAAATATGGCAAACCTTGATTTTAATTAGAATGTAG


Promoter Sequence:
>Vu_09878::LG2:37654544-37656544(+)
CATCGGCAGTTCTTTGCAAACAAGAAGTGTGAATTTGGGAGGAGGCACATCAGATATCTGGGTCACATGATTTCAAAATTAGGGGTGTAAATTGATAGTGAGAAGGTGTCAGTAGTGGTAGATTGGCTTGAACCTAGAAACATTAAAGAGTTTAGAGGCTTCTTAGGCCTTACGGGCTACTACAGGAGGTTTATAAGAGATTATGGCAAGATAGCGAAGCCACTGACTGATCTGCTGAAGGAAAGGCAATTCGGTTAGGGAGTAACTACTATGAAGGCCTTAAAGGAGGCTATTACCACAACCCTTGTGTTGGCCTTGCCAGACTTCGCACAAACGTTTCATGTGGAGTGTGACGCTTCTGATAGAGGGGTGGGGGCAGTCCAATCCTACCTTCTTGAATCTCTTTTGGAAGGAATTGTTTAGGCTGCAGGGTACCCAACTTCTTATGAGCACAACCTATCACCCAGAGATGGATGGGCAGACCGAAGTGCTCAACCGAATACTGGAGGGTTATCTGCGTTGTTTTAGCTCTAATAAGGCTAGATGTTACGTACCTGAGTATGGGACGTAACCAGTAGGCTCAATCACACACTCTCAGTGATAAGGAACAATGGAAATTTACTGAATATACCTCTGTTATTGAATAGAAATACTGAATCAAAGATAACAACCAATAACTGGGAGCAGGATCTCCGTCAATTACCTGAGAGCATAACCTCTCTTACAAAACTTGATAATCAAAATTCATATCCTTCCCCCTAGGTTTCCCCTATGTTATTCCTAATCACTCCCTCCCGAAAAGGTAAAGAATAAAAGTAATTACGCCTATTTATTATGATTATCTGGTAAGAATATCTTTATCCTTATTTATCCTATTTAACTTATATGTAATAATATCTTGAGATATGACCATAAATTCAAATAAATGTCTCGTCCATCCTAACTGCAATGTCAGTTAGGATGCTCCCCACTGCTCCCAACCGTTCGGTCCTCTTACTCTCTTCCTTCTACCGCTCGGCACTGCTCCTAACCGTTCGGTCCTCTTTCTCTCTTCCTTCTACCGCTCGATTAGGTCCCTCTCCACCTTCTATCATCCGGTCTGCTCGCTCCTTGTTATTAACTGTTCGGCCATCGTGCTTCACCCTTTCCATCGTTCGGCCCATGTCCTCTACCGTTCGGTTCCCTTCTTTTTCTCTCCTATATCTCTTTCTCTCGTATACTCGCCAGCCCCTAACACTATAATTCACAAGCCAAAGCAGCTATATCTCCGGTTAGCTGAAACTTGCATAGATGAGAGGGAACCAGAAAATGTCACAGAATCACTCACAAGGCCATAGTGGAAAGAAGCTATGGACAATGAGTATAAGGCACTCATGTCAAATCAAACTTGGGTTTTGGTACATATCAAGACCAAGAAAACATCATTGATTCTAAATGGGTCTTCAAAACCAAGTACAAAGCATATGGGAAAACTGAAAGGAGAAAAATAAGATTAGTTGCAAAAGGATTTCAACAAACAACTGGATTGGACTATGAAGAGACTTTCAATCCAGTTGTCAAGGCTAGTACAGTTCGAATCATACTTTCAATTGCAGTACATCTCAATTGGGAGGTCAAACATTTGGACATAAACAATGCATTCTTAAATGGCTACCTCAAAGAAAGTGTGTTTATGCATCAACCAGAAGGATTTGTAGACCTAACTAAACCTGAACATGTGTGCAAGTTAACTAAGGCAATCTATAGATTGAAACCGGTCTCAAGAGCCTGGTTTGACAGCTTAAAAAAAGCTCTTTTCAACAAATGGCACCGTTGTCGAGGATTAGGTCGTCCTGGAAATCATATTCACTTTGCTATGCATAGCTTTTGTAAAATAGTCCTTGATTCTTTGTTGTTTGCATGCCTTTTTATTCCTTCTCATCTATCTTAGTCTAAAATGTTCATATCTGATCTAAATATGCTTATGAATTTTAATATGGAGATCTTCGAAATTTTTGGTA


Gene Sequence:
>Vu_09878(+)
ATGAACGAATTGCAGGATAGTATGCTTTCCGAAGAGTCTATTCATGACCTTGCGTATGACATGGTGAAAGCTTTACAATAGGTTTAACCGTCTTAGTTTAGTCTGTTTTTCTACTTTTAGCTTTTATGATTCTTATCCTAAGCACTTGTGATATACAGGTTTTTACATTCAAAAGGAATCATTCACTATAATATTAAACCATCGAATATTCTATTCGATGAATATGGATGCGCAAAGGTACATTTGCTTGGTTTAGTTTTTAAAATCAATTTGACCTAATTCTAAATGAAGTGTGAACTTATTCTTTCCTTAATTATTGCAGTTATGTGATTTTGGATCGGCAAAAGAGTTGAAAAATATATCAACTCATTCTTCCTCGGTATGTTTTTAAATCTTTAATGTACTAAGTTTCTTGGTTCAATATTTTTTTTTCTTTTTCCTTTAGTTTGGAGTTGTATAAGGTTTTACTCTGGTTCCTTCTAGGTTCTTTTTCATTCTTTTCAATTTCAGAGTTAGTTAGCTTTTTCTTCAGTTAGTCTAGTTCTTCAACTGAATTTTTCTGAGCACGAGAGTGACAGGCCGTGAGTCTTTGGTGAATTCTGGTACCAATTTTGTATTTAGTTCTTGATTTTAATGAAGTTTCATGTTCCTTTTGAATTCTTGCCCAAATTTAAGTTTCTGCTCTGAATGTTTGATCTGAATGTTTACTTATCTTTAATTTTCCAGTACATAATTCTTGTCATTTACGATATGAATGTTTGTATACCTTTTTAGGTACCACTTGCAACACGCGGAACACCCTGTTACATGGCTCCGGAACTTTTTGAAGATGTTGGAATCTATTCATACGCATCAGATTTATGGGCGCTAGGCTGTGCCTTATATGAGTGTTTTGCAAGAAGACCGCCCTTTATGGGAAGAGAATATAATAATATAAAATCCATTCTTTCAGATCCTATTCCACCTCTTTGTGGTCATCCCAGTCAACATTTTGTTGATTTAATCAATTCTCTGTTGGTAAAGAATCCACCAGAAAGAATACAGTGGCCTGAACTTTGTTCACATCCGTTCTGGAGAACAAAAATTCCTCCTGTGACTCTGCCTGCATTTGATTTGAATGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGTAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTACAGATATGGAAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCAGCTGCTCAACCTACAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCTGCTGTTCAACTTGCAGATATGGCAAACCTTGATTTTAATGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCATACCTTGATTTTAATGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGACGAAAATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTCGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTACAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAAATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGTAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTACAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACTTGCTGCTCAACCTGAAGATGTGACAACCCTTGATTTTAATGAGAATGAAGAGAATGTCGAAGATCAAGCACCTACTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAAAATGCCGAGAATGCCGAAGATGAAGCACCTACTGCTCAACCTGCAGATATGACAAACCTTGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTGTATTGAGAATGCCGAGAATGTCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACTTTGATTTTAATGAGAATGCAGAGAATGCCGAAGATGAAGCACGTGCTGCTCAACCTGCAGATATGACAAACCTTGATTTTAATGAGAATGCAGAGAATGCCAAAGAAGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAAGATGAAGCACCTACTGCTCAACCTGCAGATATGGCACACCTTGATTTTAATGAGAATGCAGAGAATGCCAAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTATTGAGAATGCCGAGAATGCCGAAGATGACGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAATGCAGAGATGCCGAAGATGAAGCACCTGCTGCTCAACCTACAGATATGGCAAACCTTGACTTTATTGAGAATGCCGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACATGCAAATATGGCAAACCTTGATTTTAATTAGAATGTAG