Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10242 LG2 42718816 42721050 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to auxin stimulus, negative regulation of lateral root development, negative regulation of lateral root development, negative regulation of lateral root development, cellular response to auxin stimulus, cellular response to auxin stimulus
Cellular Component   located in   cytoplasm, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 42718875 missense_variant p.Glu20Asp
G/T 42719151 intron_variant
G/A 42719181 intron_variant
A/C 42719235 intron_variant
T/G 42719367 intron_variant
A/G 42719423 intron_variant
C/T 42719484 intron_variant
A/C 42719607 intron_variant
T/G 42719611 intron_variant
A/G 42719942 intron_variant
C/T 42720026 stop_gained p.Gln100*
G/A 42720153 intron_variant
T/A 42720154 intron_variant
C/G 42720197 intron_variant
T/C 42720553 synonymous_variant p.Ser208Ser
G/T 42720983 stop_gained p.Glu352*
A/T 42720987 missense_variant p.Glu353Val
G/C 42721023 missense_variant p.Arg365Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10242.1
MKSKKRGRESMGAMQTMTKEGAASSLRAWEGFLRQALIRHVNMGRSPCCDENGLKKGPWTPEEDQKLVQHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSLDEHAMMLQAEAVQLAKLQYLHYLIQSSNSLSSNHYDQNATTNNIEPFTLLNSISNVKENPVMLQPDAPASFSHGIASSQPLHHPNVLPQLIDPQVSFSSQSCLNSEMGQGTNFGMVSQGDHTVDHDSSWTIPSIPPNAIGTLANNPGDASSSTSSYGGGPQSYWPELFFEDPIMHVLS*


CDS Sequence:
>Vu_10242.1
ATGAAATCCAAGAAGAGAGGACGTGAGTCTATGGGTGCCATGCAAACGATGACGAAAGAGGGAGCAGCCTCCTCTTTGCGTGCATGGGAGGGGTTCCTCCGACAAGCACTCATTCGCCACGTGAATATGGGAAGATCTCCATGCTGCGACGAGAATGGCCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAAAAGCTGGTTCAGCACATTGAGAAACATGGCCATGGAAGCTGGAGAGCCCTCCCTAAGCTAGCCGGTCTGAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACCAACTATTTAAGGCCTGATATCAAGAGGGGAAAATTTTCTCAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCTATCCTTGGAAACAAATGGTCAGCAATTGCAACCCACCTTCCTGGCAGAACGGATAATGAGATAAAGAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAACCCAGAACTGACCTTGTTTCCAGCTTGCCCTATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAGTCGTTGGATGAACATGCTATGATGTTGCAAGCAGAGGCAGTCCAGTTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTAAGCTCCAACCACTATGATCAAAATGCCACCACAAACAACATTGAACCTTTCACTTTGTTAAACTCAATCTCCAATGTGAAAGAGAATCCAGTCATGTTGCAACCAGATGCTCCTGCCTCATTTTCACATGGCATTGCTAGTTCTCAACCACTCCACCACCCAAACGTGCTACCTCAGCTTATAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAGTGAGATGGGTCAAGGTACTAACTTTGGAATGGTAAGTCAAGGGGATCACACGGTTGATCATGACTCTTCCTGGACTATTCCATCTATTCCTCCGAATGCAATAGGTACATTAGCTAACAATCCAGGAGATGCTAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCCAATCTTATTGGCCTGAACTATTTTTCGAGGACCCCATCATGCATGTGCTATCTTAG


Promoter Sequence:
>Vu_10242::LG2:42716816-42718816(+)
TCGACACTTACCATAATTAAATTGAATAGATTTTAGGTTTGAAAATGAATGGCTTATCTGTGAAGCAACATGGGTCACCATTTGACGGACTCATTGGAGATTTATTTTTAATTTTTATGATCAAGGCTTTGTGTTTAACTTCAAAAGAAAAAAAAACACGTTAATTTAAATCCTTTCAAAAAGATGAAAAACTAAATCAAAAAACTTTTTTTTTAAAGGTTGAAAAAGTTTCTTTAATAAATTACTAAATTAAATTCTGGGTTCTAGTCAGTGTCAACTTATATTTTTCCCAATTAAATTACATTCAAAATGGGTCATTTGAATTTAAATAAGGAACCAATTACATTACGCCACTGCTCCAAAATTCAAGGAAAATGCGTATCATTGTATATTTGGTTTTGCAGATTTAGCCAAGTTTCAAAACACTAGTGTGTACTAAGCGATAACCTTTTACTTTGTATTGGCTTTAAAATGGAAGATGGTGCCATGACCAAGAAAATGTGCATCAGAACAAGGTGCATGGGGACAAATCTCCAACAAACGCCATTGAAGGTTTCTCAACCGTGCAAAGAATGTTTTAAGGGTTAAAAAAAAAAAAGAAAATTGGGGTGGACTTGGGTGTCTGCTGCAGCAGATTCTCCTTCACGTCTCCAACTGCACCACCCTCCGAGTCAAACGAGTCACATCCTTTATGTCCTTTTCAGGCATTCAGCTATTACTGGTACCTTTGATTTGTCCTGACTTTTTAACTTCCAGGCTTTCACTCATATACTTTATATATCCATAATCAATCCATGTAGCTATAACTATTTTCAACAACTTGCGTAGATTTTTTTGTTTACCTGTTTAGATATTCAGATAAATTATGAATCATGTGTCTATATTTTACGTCCCAATTTGACCTAGATACACATGCATATGTGGTTTGGTGTACCTTTGAGTGTCTTCTCAATGCTGATCATTACATTATAATTATAATTATAATAAAGAGGATTAAACTAATCAAGAAATGTCGATCTTATATATTTCATATAACTTCTCTATTAGAAATACAATAATTTCGTCTTTTTGAATTTAATTCAGTTAGTTTTGATACAAGTGTGCAGCTTTAATTTTCTGTAAGAAAGATTGTTGTCCTGAAGAAAGGAGAATAATAAACGTAGACTAATAATAGTTAACCTAGACAAATTTAAAAATAAATTCAACTATAAAATCGTAAATAAACTGTTCAGAGATCAAATTAAAAATTGCCTATTAAATAAACTTGTCTCTTATGAAATATGTAAGTAAAAAATATAAAGAAAAATTAATTTTAATTGCATGGTATATTTTCATAAGTTAGATTTTTCAATCTAATGTTTATTAAATGGTATACAAGAAATGATGGACCTCTATAACATTGCATTGTGGAGGATTTTATTTTATTTTTCTTAATTAGGATTAAACGAGTGTATATTGTCCTCATACATTTATTTATATGGTTATCCTCAACCTATATATGTGAACTCAATCCTCAACCTAAATAACTTGAACAAGGGTTGTCCTATAAATAGATGGCCACACATTATTCGTAGTGCTGAATAACACGAGAGAAACTTTATACACGATTTTATATGAATGTAAACTTGTTTATTTTTTAATTAATAAATTAAATAACTTAAAAAAGTTGAAAACATCTTCTATTGTGAAAAAGAAAATTATAACATACAATCATTAAATATTATTTAAACTATATAATAATGTTGAGAAGAAAGAGCGCACACCTCATGTGTATTTATTAGGGAGAGGAGGATTCAATCATCAATTTAAATAAATTAATCTCAATCAGTGATATATATAAAAAAAATAACTTTTTTAATGTCTGCCTACAGAACTAGTCGTAGGAATACATATTATGTAGGGTATACATAGTTAGATTAATAGTAATATACATCATTGGTAGATTTTTTTTTTTTTTTTTTTAGGTATTGTGGTTGAGTTAATGATTTGTTTAAGGAGCA


Gene Sequence:
>Vu_10242(+)
ATGAAATCCAAGAAGAGAGGACGTGAGTCTATGGGTGCCATGCAAACGATGACGAAAGAGGGAGCAGCCTCCTCTTTGCGTGCATGGGAGGGGTTCCTCCGACAAGCACTCATTCGCCACGTGGTACGTAATCTAATTTGGAACCTAGTCCTTTTAGGAACACTTTAGTGCCATATTAGTAATCACTTAGTTGAAACTAAAACAAGTTTAGTTCATAATTACCAAATTCTCCTCATTGTTTGGTTTGAGTATCATATTTTATTCAATTTCGAAATTTATACTAGAGGGAACCCGCTGAAGGAAACAAGAATTGTTCAAGTGATTAACAGGAAAAAGATTATTTTTAATTACTCATAGCATCTGAAGAAATTGATCGAGTTCTTCAGCATGTCTACGTATGCGTAAAAAACTAAATAAAAAATATTTGTAAAGTGAATTTTGTAAAATAGTATATTTTTACTAATAAAATATCATTGGATTAGTTAATAGTTCATTTAATTAATTCAAATACAAAAAGTACCACCACTTGGAAGTACTACTTAAATATACGATAAAATAACATATACTCTAAAAGTATAAACAATTTTCTTACTATCATTTAATCATTATTATATCATAAAATTCTTTAATTTTAAAAATAACTATAATTAAAGTTATACTGATTATAACTTTGTTTGATTATTAATATAAATTTTCTTATAATGATATTGCATATCAACACATTTAAAATGTTAAGCATTAGTAATGTGGCTAATTAAATAGCTTGAAGGGCAAAGTTGTAAAGACTGTGAAATGTTATTTAATATTACATATAATTAAGGATGAGAAGAAAGCGATAAGAATATAATGGTTATATAAGTAGTGTGCAGAAGGCCGAGGTTAATTTGGTAGTTAACGAGGAGTAAAGGATAATAATAGTTTTTGATCAATCTAAGTATAGCGCAGAATATGGGAAGATCTCCATGCTGCGACGAGAATGGCCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAAAAGCTGGTTCAGCACATTGAGAAACATGGCCATGGAAGCTGGAGAGCCCTCCCTAAGCTAGCCGGTACGTAAATTTCTACCTTTGAACCAGTTCTTTTCTCTCTTTTCAATGTTAGTTTTCTCATTCATTTTTCTTTCTTGCAATTCTTGCAGGTCTGAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACCAACTATTTAAGGCCTGATATCAAGAGGGGAAAATTTTCTCAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCTATCCTTGGAAACAAGTACTTTCCTTGCCACACTTCTCTTTTTCTTCCTCCAGTTTTCCATGCAAATTTAACCTACTCCTCGTCTTCTCGTTATTTCTGCTGTTATGACTTTTTTCCTTCTTATTTTTGGATTCCTAATCTTTTTGTATTTTATTTCTTTAAATGAAATTTTATAACGAATACTGAGCTCTATATGAACATGCTTCTTTATCAGATGGTCAGCAATTGCAACCCACCTTCCTGGCAGAACGGATAATGAGATAAAGAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAACCCAGAACTGACCTTGTTTCCAGCTTGCCCTATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAGTCGTTGGATGAACATGCTATGATGTTGCAAGCAGAGGCAGTCCAGTTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTAAGCTCCAACCACTATGATCAAAATGCCACCACAAACAACATTGAACCTTTCACTTTGTTAAACTCAATCTCCAATGTGAAAGAGAATCCAGTCATGTTGCAACCAGATGCTCCTGCCTCATTTTCACATGGCATTGCTAGTTCTCAACCACTCCACCACCCAAACGTGCTACCTCAGCTTATAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAGTGAGATGGGTCAAGGTACTAACTTTGGAATGGTAAGTCAAGGGGATCACACGGTTGATCATGACTCTTCCTGGACTATTCCATCTATTCCTCCGAATGCAATAGGTACATTAGCTAACAATCCAGGAGATGCTAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCCAATCTTATTGGCCTGAACTATTTTTCGAGGACCCCATCATGCATGTGCTATCTTAG