Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10288 LG2 43342354 43345796 PREDICTED: GATA transcription factor 25-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, circadian rhythm, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, zinc ion binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, identical protein binding, sequence-specific DNA binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 43342535 intron_variant
T/A 43342543 splice_region_variant&intron_variant
A/T 43342765 intron_variant
G/T 43343290 intron_variant
A/T 43343462 missense_variant p.Phe218Tyr
A/T 43343877 downstream_gene_variant
A/G 43344872 downstream_gene_variant
A/G 43344875 downstream_gene_variant
G/T 43345393 missense_variant p.Ser101Tyr
G/A 43345524 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10288.1
MYDPMNQIVPAEDNDASDQHIHYSSHSIEDVGAIVEHVSSDSLYVPPPEISIHDSSQLTLSFRGQVYVFDAVTPDKAVQAVLLLLGGSELTSGSQCAEELSPQNHAGAAEFPARCSLPQRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGSDQESGQEAVQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQELSLVPLEQVGVGDNNDLDCGSIIPAQHDNHVNDNKALVSDR*


CDS Sequence:
>Vu_10288.1
ATGTACGATCCCATGAACCAGATCGTTCCCGCCGAAGACAACGACGCCTCCGACCAACACATCCATTACAGCTCCCACAGTATAGAAGACGTTGGCGCCATCGTCGAACACGTTTCCTCCGACTCCCTTTACGTTCCACCCCCTGAAATCTCTATCCACGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTCACACCTGATAAGGCAGTCCAAGCAGTTTTATTGCTCTTAGGGGGAAGTGAACTGACTTCGGGCTCGCAATGTGCGGAGGAACTATCCCCTCAAAATCATGCGGGTGCAGCAGAATTTCCTGCAAGATGCAGTCTACCACAGCGAGTAGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGACCAAGAGTCAGGACAGGAGGCTGTTCAATCTGAAACCTCTTGTACGCATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCCTCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACTCTCTCTTGTGCCACTTGAGCAGGTTGGTGTGGGTGATAATAATGACTTGGACTGTGGGAGCATTATCCCTGCACAACATGACAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA


Promoter Sequence:
>Vu_10288::LG2:43345796-43347796(-)
ATACAACAAGATCAGCTTTCTTTTGTTTGTCTCCTCCCTTCCATAATATAACTCTCTTCTTCTCCTTCTCTGTTTTCTAACAGGTGACAGTTTGTTCTTGAATGTGTCTCTTTATTGAACTTATCGTACTCTAGAGTCTTAATAATTTAAACTTGACTCTTTAAATCAGCTTGCTGTTCAAAACATGGGTCATTCTCTGCATGTGTATCTGTGTGTGTGAATAATCCAAAGTATTTGATGACTGTTCTTAGCAAGTAACATCCAAAATGTACCATGATGTTTCTTATATGGAAATATATTTTACAGGTCTCACAGGTGCAACAACTGACTAGTGACTATATTTGGATTATGCTAAATTGCTAATATCACTAGATGGTGAGATTGTCATTTTCTTCCTTTAGACTGTTTTGAGTATCATTCCCATGAGGTGCTTGTGGATTCCTTGAATGAGTGAGTACCGGCTTTATCTGAAAATAGAAAGCATATCGACTTCTTCACATTGGAATACAAGAACTGAAATTGTCATCTACTTTCTAAACCCCGTGAGCTAATTAGATTCCTGAAACCTGTTTTTTCATGATTTAGATTACATACAGAAGTAAGGCCTTGGGGGTTTGTCCATACATGTACATTATATTCGTTAATTCATCAATAGGATTACTAGGATTCTTGTGCACTAAAACTGTAGCTGTACTATTATTTTTGGGTTTCTCTGTTGACACTTGGATTGTACAGTCCGGCCTGAAATGCCGGCAAAAGATAACCCTCCACCATGTCCTGTATATGCTGATATTGATCATTTAAGAACCATGAAATGAAATTTAAGGATATCATACCGAGAACAACGGACTGAAAATATCGGCAAACAAAATTTATATCTTGTAAAACAGAACTTTTTGTTTCTATAGTTAAACATATCTCTTAATTCTGCTTTTGCTCTTTCTACTTCTTGCTTACCCGTATCACCCACGGATGGGTCTTTCTTTCTCTCTTTTTTTATGTTCTTGTTCGTGCCATGATAACTGTTTTTTTAAATAAATAAATAAATAAAGCGATTCCTTAGATACAAATTGTTATTTTGGAGAGGAACGAAATTATTATTAAAATTAAAATGAAACCAAATTTAATACAGTTTTATATGACATTTTATTTATCAGTGACACATTTTCTTTCACGTTGCAAATTGATATATGACAGTTTTAAAAAAGTTAAAAAAAGTACAAACTACATATGACATTAAATTAATATCATAAATTTGAGGGTTTTAATCTTAAAAATAATTTACATTTAAGGAATTTATATGTATAATAAAAACAAAACTAAGGAGGACGTTAAAGAAGAAAGGGGACTATGGATGATACTCAAAGGGAGAGAAGGAGAAAATAAGAAATTACGTTCAATTAATCTCATAAATATTAAAACCAAAACATTAATTAAATAAAAAACACATTAAAAAATAAAAATAAAAATAACTTAAATATATATATCAAATAATAACAAATTAAAAGATGTTATAAAAGATTCTGTGGGACTGGAGAAGAATTTTGTCGTTAATCTAAAAGTAAATTGTAATTTGAAAATTAATGAAATTACAAAAAATTTCTCTGTTTTTATATTTTTATAATAATAGGAGAATTTGAAAAGTATTGCAGTGACACCTCCACATGTTATGTATAAATTTATGGAGGTGACTAATGTAATTTAAATCAAAAGATGGACAACCTCGTAAATATGAAAAGGTTCATGGTCAAATTTTCAGTGTATTTCTTTCTCCCAATCTTTCTTGATAACAATCCAGCGGCAACATCATATTCTCAGACATATTTATAGTTATCTCCACTGTTGTAGCCATCTTTCTTACTCCACCTTCTCTCCCTCATCCAACTGGGTTAGGGTTAGGGTTAGTTATTAGAAGTAGAATTAGGGTTAGGGTTAGTTTCCTCTCCGGCGTAAAATGTGACACTTCCAAAACCCCAAATTCTATCATCCCACCACCAACA


Gene Sequence:
>Vu_10288(-)
ATGTACGATCCCATGAACCAGATCGTTCCCGCCGAAGACAACGACGCCTCCGACCAACACATCCATTACAGCTCCCACAGTATAGAAGACGTTGGCGCCATCGTCGAACACGTTTCCTCCGACTCCCTTTACGTTCCACCCCCTGAAATCTCTATCCACGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTCACACCTGATAAGGCAGTTTCTTGTTTTCTTCTGTTTGCACTCTTTTTCATTTAAATCGCTCTCTTTTGAAAATGAACTGAATTGTATTTCTTTTTCGTTGTTACGACGCCGTATCAGGTCCAAGCAGTTTTATTGCTCTTAGGGGGAAGTGAACTGACTTCGGGCTCGCAATGTGCGGAGGAACTATCCCCTCAAAATCATGCGGTACGTTTCATCGTAGAACTTGAAGCTCAGAGAATTTTAAGCCTTTATTGATAAACTTCTTGAAAATCACTTTTACGTGTAGAATTGAACCTCGATAAGATGGAGTAATCACCTTATTTTTTTGGAGAATTTAAAAGATAAAGCTTCTTTAGAAGTTAAAGGGTATAAGTTGATTTTAACTTATGGTGAAATTTATCCCATTAAAGCCTTTCTGAAGGTATTTTCTGGTTGTACGTTTGTTGATGATGGGTTTAGGGTGCAGCAGAATTTCCTGCAAGATGCAGTCTACCACAGCGAGTAGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGTCTGAATCTGATAGTAAGCTTTCTACTTGCAGTTAGAATCTTGAGTTTAATTACCAAACTATTTACCTTTCTTTTCTTGAACCATTTTTCTTATACGTGTATTGTTGGGTATATTAAATTAGTTATTTGTATGGAAAATAGTTAAGAATAATTGCTTTGAAAAAAGTATCATTTCATCATGAATGTATAGGTTTTGTAGTTTTAGTTAGTGATGACATATTCTGAGGGATAGTTATTGATTAGATCGATTGGGCTAATATCAAAACTGCCATTATAAAGCAGCCAGCTGAACCGGTATTTTTTTATTTTTTGAGGGACTGGTTCCTGATTTATATTGACACTGTTATGCTATGCTGCAACAATAAATATTGATTCAAGAACATTAATTGTCAAAGAAACTGTTAAATATTTGACGGGTTTTATGAGAAGCATTGTTTTTCACACTCTGATTTTGCTTCTTTCTGTATAAATATAAGCGTGTTTTGGATTCTTGTACTTCACTCCTATCAGGAACCTGAATTTTCTTATTTAGGGCCTATTTTCTGTGCTTTCTTTTCAAGAAAAAACAGTTTATTGATAAAAGGAACTTTAAAAGTTATAATAATTGGATAAGTTTTACCTAAAAAAACGGTATTTTAGTGCTTTTCTCACGAGTTAAAAGTAGCAGCTTCTCAAAAAAGTTTTGAAGAGAAGTTATGTCATCATTAATCTGTTCTTCAAAGTTGAAACAAGTGTACCTGTGTTGAGATATATGCCAAATCAATTCTATTATTCCTCTTTAAATGCATGGTTTACATGAAGGTATTCTAAAATATTAGGATTGAAAGGATTTTTGTTTGCAGTTATCTTACATGTCTACTGGTAGAAGCATCCAATATGACATGCAAGTACAATGGATTTTTAGTAAGAATATTAGATTTTTTTATACAAAACCATTCACGCAAAACATAGGGGATATATGTCATACTGAGATATATGAATTATGTTATATTGTGAAGTATTGGTGCTGTCAAATTAGTGCTATCAAATTCTGAAGCTCTCATCTTTTGAAGGACTATTGAACATCGTCATTGTTCACATTTTATTCTTATTGCTTACCGTTTTAGCTGTTTGACTTTATTTGCTTCAGTGCCTATATCTTACCTTATTTTTTAATGTGTAGGATGCATCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGACCAAGAGTCAGGACAGGAGGCTGTTCAATCTGAAACCTCGTAAGTTTCTTAATGTTACTTATGCAATGTTTAAACATGAATATTTATTTCATCCCGATGTTATTCTGTGACTGACTGGTTTCTAGTGATTAAATTTGAGTCTTGAGACATGCCTTTTGATGTTTTACTATCTCTTGTATTTTATGATTATCAATGTATAGTTGTACGCATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCCTCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGTAAGCATTTCTTAATATGATTTGTAACCTTTTTTTTGGGCAGGGGATACCTGGCTCATCTTGTTTTCTATTTTTTAGTATGTATACATTCATTTAGTCTAATTGACTTGAAAAAAACATAGACAAAAAAGAAGTATCATTTGGCTCTCTTTAGATCTCCTTCCCATTCTTTCATCTATTACCTGAATGCTATGGGTTAAAACCCTTGGTAGTTTATGACATCTCTATTATTAATTAGAGATTGGCCTGTTCACTTGTGGGGTGGACGAACCACTCTTTCGTGCCAGATTGGATTTGTAGGAGCAAGTCCCATATCAGCTGGAGGTGAGACATAAATCATTTAAAGCAGAGGCTCTCCCTCATTAGACTGTTATGACATAAGAGTGGACTCTGCATCAAGTCATATTCTCGTACACAGAATTCTCCAATATTCTTCTCTATTGAAAATGCTTAACAGATTTGGGAATTATCTAAGTTGGTTGTTTAATTTTGCAAAGACATTGAAGACCCCTATACATGATTCTTATATTCAGTTTTTTTATGTTTCTTCCGGTAAATTATTTTATTTGATATTTTCTTGTACTGAATCTGATTATCAAAATCTCGGGATGTTCTGTTTATCAGTTTGCTACCATAGTATCGTACTATTTCCTTAGAGGCATCCGATGTTAATTTAATTTCCTTTCCCTCCCATTTCAAAGCATGTCAAGGAAGGTGCAACTAAATTCTTTCGAGCATTAAATTCAAATTTGCTCAACTATGAATCTAAAATTTGCTACTTTCAGTAATGTTGAATTTGATTGTTGTTTAATCCAACATTCTGATGCCGTAATTCTGCAGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACTCTCTCTTGTGCCACTTGAGCAGGTATGTAATGTTTTCGTTTATTATATCAGGTTATCTTTTACTCCTCCGTGTGTTAATAAATGCATATTTTTTTCGCATCTGCACTCGATGACAGGTTGGTGTGGGTGATAATAATGACTTGGACTGTGGGAGCATTATCCCTGCACAACATGACAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA