Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_10692	LG2	47599638	47601244	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of flower development, circadian regulation of gene expression, regulation of flower development, regulation of transcription, DNA-templated, regulation of flower development, regulation of flower development, regulation of flower development, circadian regulation of gene expression
Cellular Component	is active in	nucleus
Cellular Component	located in	nuclear speck, nucleus
Molecular Function	enables	zinc ion binding, DNA-binding transcription factor activity

SNP	Position	Effect
G/A	47599745	3_prime_UTR_variant
G/T	47600084	3_prime_UTR_variant
T/C	47600477	intron_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_10692.1

MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVAPFYESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPNPKTDLNSSQYLFSESEPVPYIDLDYAVADPKADPKGSATADGVVPVQSNYEPFAYGYKYNSTTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDADPLAGYGVVPSC*

>Vu_10692.2

CDS Sequence:
>Vu_10692.1

ATGGCTTCCAAGCTCTGCGACTCATGCAAGTCCGCCACCGCCACCTTGTACTGCCGCCCCGACGCTGCCTTCCTATGCGGTGCCTGCGATTCCAAGGTCCACGCCGCCAACAAGCTCGCCTCGCGCCACCCACGCGTTGCGCTCTGCGAGGTATGCGAGCAGGCGCCCGCGCACGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGCCTCGCCTGCGACCGTGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGTCTCCCTGTCGCGCCCTTCTACGAGTCCGTACACTCCGTCAAGGCCTCCTCGCCTATCAACTTTCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGATGTCAGCACCGAGGAGGCCGAGGCCGCGTCCTGGTTGCTACCTAATCCTAAAACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAATCCGAGCCCGTTCCTTACATAGATCTGGACTATGCCGTCGCGGATCCGAAAGCGGATCCGAAAGGCTCCGCTACCGCCGACGGCGTGGTTCCGGTGCAGAGCAACTACGAGCCGTTCGCCTACGGTTACAAATACAATTCCACCACTCTCTCGCAGTCACAGTCTCAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGAAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCCGCGGTGACAGTGACGGCTCAGTTTTCGGCGGCGGACAGGGAGGCAAGAGTGTTGAGGTACCGGGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCGTATGCAGAAACGAGACCAAGGATCAAAGGCAGGTTCGCTAAACGTTCTGATGCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGCTGA

>Vu_10692.2

Promoter Sequence:
>Vu_10692::LG2:47601244-47603244(-)

TTGTTATCGTAAAATTGGCAAACATTTCTTTGAAGAAGCTGTAAAATAATTTTAAAAAAAACATTTCTTTCATTCTTCCTTTTTGTCATGAAAGTGACCATTTATCTGCATATTGATATGGTATGGTGAAAGGTTTTTGGAGGCAAAAAAACTGAGCTTCCATGGTTTCACTTTTTTACACATCAATCACAAAATTTGCATAACATCATTGAATTGGAACCATATCCCCAACTTTTCACTTTTTTATTACTTTGCATACTGTGAAACAAACTATGAATGATTGGAAGGAAATAAAAGTGAAGTTTAATTATGTTTGCAATGAAGTTGAGAGAAAGTGGAGGAAACAAAAAGAGGCCCCCACGGTATTGAGTCACTATCATCTTTAGTCCAAACTCGGAGTATAGTTACAACTTCAACTACTTCATTACTTATCCACACAAAAAAACAACGTCAACATGTAATTTCCTTTCTCCTATCTTATGGGCATTCTCTAGTTATAAAGGTGACGTGAACTAATTAAACACTTTCTGTTTTAAATTTTTAATCCATGAAAATAAAACAAATATATATACAATATTATTATAAGCGTGAGATTATATTATAAAATATTAAATATGCTTTTAGTAATCAAATTTTAAAATTGAATATAAATGATTATTTTAACTCAATTATGTTAAATTTTTAAATGTGTTACGTAATGTTTTAGGCTAATTTTTAGGTTTACATTTAAACTCAAATATTTGTGTTTGAAAGGTTTTTTAATACGTGAAAAAAATATTATTAAATTAAAAGAATTATACCAATTTGTTTTAAAGTTTAACAACAAAAAATGTATTTAAATTAAGACATGCACGATTCCCAATTTTGTATTTAAGTTTAGAGATTAAAAAAAATATTTCACTCTTTTATAAAAGTTGACTATTAATGATAACATGCAAAGATAATTTAATAAAATTTGACTAAATTATTTAAAAGAATTTAATTATTGTATTTTACTATTTTTAACACTAAAGAAATAACTTATTGGTTTTGTAATTATTGATAAAAGGGTAAATATACTATGCTTCTAGTTACAGACACGAATCAAAAATAAAATAAAATAAATCTATATAAAAGAAGATAAAATTATTTAAGATATCTTTTTTCTTATTTTAAATCGTTATTACATTTTACATTTTTCATTTCTTTAAATCTATAAAGTGAACACGTGATTTGAAACATTAAATCAAATAAGTAGAGCAAAACCTTAAGGTTTTCTGCACCATGTGTAGAGAGAGAACACGAGAACATTCAAGCACGTTTAAAAATATGTCTAAAACATTAATTTCTCGTTATATAATCTATAATATTTATATTACTCTTTTCTTCTCTCACAATAAAATAAAATTTTTGATAGAAAATGAATTTAGCTTAAAATTAACAAACATTTTAGCATAAAACATGTGCAGGATTAATGTTGATTTTATAGGCACGGAAAGGTAGGTGTTTTTTAAACATGCCCTAAAAGGTGACAACAACATGAAGGCATAATACGAAAGCACTTTATTTTTGGTAGAGTCGTAATAATAGACGCGGGACACTACTCCCACCCTGTATTAAGGTAAAAATAAATAAATAAAAAGTAGTATTTAATTTTTGGTAGGTCGAAAAAATAATAATAATGTGAGAGAGTGTTGATAGAATAAAAGGTACGACAGAATTATGGTGAGTGACGATAATAATTTTATAAAGATGCCAAAAAGCTTTGGATGAAAAGGAAGAGTGGTGGAGGGGGTTGGAATATGGCACCACAGCGTCCGAACCCAAAACCCTCTTTCTCCTACAGACTCTATTGCAGTTGCTTCCCCACCCCTAAATTTATTGTAGGGTCTATATTCGGCTAAGCCTCTCCACGTGCCACTGTTTCATTGGTTATTCTTCAGATCTCCCGGGGCCCACCAGATAGACTTGGACACACTTGACTCGACTACTTTCACATAATCACGCTTCCTCACTTCCAC

Gene Sequence:

>Vu_10692(-)

ACCACACCCCATTCCCAAACAAAATAAACACAAATCACAGAGAGAGACGTAGAGGGAGCCACCACTCATGGCTTCCAAGCTCTGCGACTCATGCAAGTCCGCCACCGCCACCTTGTACTGCCGCCCCGACGCTGCCTTCCTATGCGGTGCCTGCGATTCCAAGGTCCACGCCGCCAACAAGCTCGCCTCGCGCCACCCACGCGTTGCGCTCTGCGAGGTATGCGAGCAGGCGCCCGCGCACGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGCCTCGCCTGCGACCGTGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGTCTCCCTGTCGCGCCCTTCTACGAGTCCGTACACTCCGTCAAGGCCTCCTCGCCTATCAACTTTCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGATGTCAGCACCGAGGAGGCCGAGGCCGCGTCCTGGTTGCTACCTAATCCTAAAACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAATCCGAGCCCGTTCCTTACATAGATCTGGACTATGCCGTCGCGGATCCGAAAGCGGATCCGAAAGGCTCCGCTACCGCCGACGGCGTGGTTCCGGTGCAGAGCAACTACGAGCCGTTCGCCTACGGTTACAAATACAATTCCACCACTCTCTCGCAGTCACAGTCTCAGATGAGCCAAAGTGTAAGTCTAAGCACTATCTTGCCGTGATGTTTAGTTGTTTCGAAATCGATTTGTGGAATATGATAACATGGATTAATTTGTTTGTTTGTTTGTTCTTGTGGTTGTTGATTCTTTCAGGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGAAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCCGCGGTGACAGTGACGGCTCAGTTTTCGGCGGCGGACAGGGAGGCAAGAGTGTTGAGGTACCGGGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCGTATGCAGAAACGAGACCAAGGATCAAAGGCAGGTTCGCTAAACGTTCTGATGCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGCTGATTTCGCTTTATATATCTACTATGTATGATGCTACTGCTGCTTACTTTTTGTCTTCTTATGTTTGTTTTGCTGTGTATATACTACGATCTTTTTTGTTTGAATTAAGCAATGTAAAGTTGCAAACAGTTGCTGTGGATCGATTTTGTAGTTTGTTCGTTGTTTTTGGGTGAATTTTGGGACCTTTTGCTTATGTGAGAAGGTGAAAAAAGAAGCGAAGGAAACGATGATGGCAATTGCACTTCCTTTTCGGCTGTGGCTGCTGTGCAGAGTTTCGCAAATCAAATTCTGGAAAACAATTGGTATTGAACATGTGATTAAGAGGTTTCTTTAATCACAAATTATATTTTATAGTATCTTTTAAGTTTATTTCATTCCTTCTCCTCAAAGAGAAAGAACAACCGGCACCAATCTACTTTAAGAAAATAACTTTACTACATTAATAGTACCAACTACTTTCGGAATCAATAAATAAATAGATTTTTGGATTTTA