Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10805 LG2 48638893 48640364 PREDICTED: zinc finger CCCH domain-containing protein 23-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, mRNA destabilization, mRNA destabilization, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, mRNA destabilization, mRNA destabilization, mRNA destabilization, mRNA destabilization, regulation of transcription, DNA-templated, mRNA destabilization
Cellular Component   located in   cytoplasm, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, single-stranded RNA binding, RNA binding, DNA binding
SNP Position Effect Amino acid change
T/C 48638979 3_prime_UTR_variant
C/T 48638987 3_prime_UTR_variant
C/G 48639345 3_prime_UTR_variant
A/C 48639371 3_prime_UTR_variant
G/A 48639405 3_prime_UTR_variant
G/C 48639413 3_prime_UTR_variant
A/T 48639438 3_prime_UTR_variant
A/T 48639624 synonymous_variant p.Ile239Ile
G/A 48639649 missense_variant p.Ala231Val
T/A 48639709 missense_variant p.Glu211Val
C/G 48639750 synonymous_variant p.Gly197Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10805.1
MTPNVQIPLWDSAAADGGPVSPFSPNAPDTASFSTDHFRMFHFKVLTCPRGRAHDWTECPYAHPAEKARRRDPRKFLYSATACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTNDQLRLAPDSSSLSSPTSVITSSFFDSPPSSPYVHNIQEIVSSMRNVQLEDGLFSGLTRCVFGSTSGGILSGNGCEEEEPAMERVESGRDIRARIYAKLSRENSIAGSAPHVGWVSEPVNGFRGL*


CDS Sequence:
>Vu_10805.1
ATGACACCCAATGTTCAAATACCCCTCTGGGACTCCGCCGCCGCAGACGGAGGACCGGTCTCCCCGTTCTCTCCCAATGCGCCCGACACCGCCTCCTTCTCCACCGATCATTTCCGGATGTTCCACTTCAAGGTCCTCACCTGTCCACGTGGCAGGGCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCGTGCCCTGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTTGCGCATGGCGTGTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGGACTAACTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCGCACCCGATTCGTCCTCTCTTTCCTCTCCCACTTCGGTTATCACCTCTTCCTTCTTCGATTCTCCACCCTCTTCTCCTTACGTCCACAACATACAAGAGATAGTTAGTTCAATGCGGAATGTTCAACTGGAGGATGGACTTTTCTCGGGTTTGACCCGGTGCGTGTTCGGGTCAACAAGTGGCGGTATTTTGAGTGGTAATGGGTGTGAGGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCGAGAATATACGCGAAGCTTAGCAGGGAGAATTCCATTGCAGGTTCTGCTCCTCACGTTGGATGGGTCTCGGAACCGGTGAATGGATTCCGGGGCCTTTGA


Promoter Sequence:
>Vu_10805::LG2:48640364-48642364(-)
TTGAAGGTAATTGAGAATGGATTTGAAAATAAAGTTGATAAGAGTTAATGTAAGATTTGATTCATGTAACAGATTTAAAAAATTTGTTTAATTTTTAAAAACTAAAGATTATCAAAATATCTGTAATTTTTAATGTAATATAAAATAATAATTGTTAATCTTATATTTAATTGTAAAAGGAGTTTATAAAGAGTAAAAAATTAACATTAATTTTTAAAATTAATTTTAATATTGTAAAAAAATTATTTTAGTAAAATAAATTTATTTTTAATTTTAATATTTTTATTAGGAAAAAAAAATCAAGGAATCAGATTGTGTTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTTATATATTATGATACTGAACATGTAATACTAAAATGGATATCTTTTTATGGTGAAATAGTTTTAAAGTATCTAAATTTTGATTCTACAGGAAATCAATCATGTTGGTGCTGGTGGATTGTGGGCAGAGCCTGTGAATAACAGATGTCATTACTTTCTTTTTTTTCTCGTCTGTCACCACCGCTAAATCGCACCGTTTCATGCAAAGCATTCCTCCTTCCTCTTAAGGCCCAATTGAGACATTTTCCAAAAATAAAAACCTAATCTTGATAATTGAAAACACGAGGATTTACTTAAAAATTTTCAACAAATATAAGTAGGGTTTAAACCTAATAAATTATACATTTTCGCTCAAAAAAATATTTTATTACAGTTCACCTAAAATTTTATTTGCGGGAGATTAAATTTAACAAAAGCTTCATATTTTGAATTAATACCTAATATTAATTATCACCACATCAATTTATTATATCTATAAATAATTATCCAGATATTAATTTGTATATAACTTTCATTTTAAAATATTTTATATCAATTTAAAACATATTTTGTAATTTCTTTTTAGATTTAGTTTTACTTATTGCAAGTAAAATGAATAATACTTAGTTTTTCTCTATCCCAACAATTTAATACTTAAAATGATTATAACATTATTTGAATACTTTTTTATAAATTTTATTAACAAGATATTTATTTAAACATTATTAAATCATTTTAATTCATACAAAATTTATTCATTAAAGTATTATTGTCATCTAACTTAGTTGATCCCGATGGGTAAAATACTATTTTATAATTGATATTTCAATATAACATTTTTTATTTATTGCATTTACTTATATAAAGTTGTTTTCATATCACATTACTAAAAAAATATAAATATAATTCTTATTTTTTTTAAATTTTAAACCACTACTTAAATTTTTTTAATACTTATATACTCTTTTTTTTCAAAATAATAAATTCATTTTAAATTTTGTATAACGAACAATCGTAATGCAATATAGTTTTAAACATATTTCATTAGTTTTACAATTTTTTTCATCAGATTGATTTTAATTTATCATTTAAATTATTCTACATTGAATTCACACAAAATATAATTATAACTTTTTATTTTGTTTACATATTCTTCAAACTCTTTATTTTCTAAATTCAAAAGAAAAAGTAAAAGACCGAGTAGAATTCAGTTCGCCAAAAATCAAACATGGACCGGTTCTTTGACACTGACGTGGATTATTAGCTATAAGAATTTGATTCTCCAAAAATTGAATTTCTGAACTCTAACAATAAATTGGTTTAATTAAGTTAATAAAGTTATAGCTGTTTATCCTAGACATCATAAATATATATATATATATATATATATTATATATATATATATATATATATTTCTGGGTGGTTAACTCAATTTTTCTGATGGATGACGAGAAAGAGAAGAAAGGTTAACACCAACTCTTACAGTAACAAAGCCATGTGGAAGCTGTACACCTCATCATCATAAAACTACAGATATTTCTATGTTACTTGTTATTGACTCAACCTTTGTCAAACAAAGCAAAACCCCGCCTTATATATTTACTCACTCTCACCCAAACAGAC


Gene Sequence:
>Vu_10805(-)
AAACAAAATCCAAATCATAAACACATGACACCCAATGTTCAAATACCCCTCTGGGACTCCGCCGCCGCAGACGGAGGACCGGTCTCCCCGTTCTCTCCCAATGCGCCCGACACCGCCTCCTTCTCCACCGATCATTTCCGGATGTTCCACTTCAAGGTCCTCACCTGTCCACGTGGCAGGGCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCGTGCCCTGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTTGCGCATGGCGTGTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGGACTAACTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCGCACCCGATTCGTCCTCTCTTTCCTCTCCCACTTCGGTTATCACCTCTTCCTTCTTCGATTCTCCACCCTCTTCTCCTTACGTCCACAACATACAAGAGATAGTTAGTTCAATGCGGAATGTTCAACTGGAGGATGGACTTTTCTCGGGTTTGACCCGGTGCGTGTTCGGGTCAACAAGTGGCGGTATTTTGAGTGGTAATGGGTGTGAGGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCGAGAATATACGCGAAGCTTAGCAGGGAGAATTCCATTGCAGGTTCTGCTCCTCACGTTGGATGGGTCTCGGAACCGGTGAATGGATTCCGGGGCCTTTGATTTCTCTCTCTACTGTTAACCTCGTATGATGCCATGTCAAATAAAATAAAATTTCATGTACATAGTTGTTGAGTTCTGAAGAGACTGTTGGGTGTCTTTGCTTTGTACTTCCCTGTCTAACATTTTTTACCTTAGCTCTGCCTTTCCCAGAATGGCTTCGCTACCAATTGATTGTATAATATCAAATGTTTATTTTCGACTGTAGTTTTCTGTTAGCACACCACCTTTGTCTCAGGAATGTCAGAAATCAGAAGATTGAACAATGGTGTCTTTTTTTTTTATGTGCCAAGAACAGTTATCTAACGTAATTCATTCATATGTTTGATTCTTCAAGCGGTCCCTTCTCCATTTTCTCCATTCATATCTAGCTTCTGCTGGATAGTTTGCAATGCTCTTTTCCATTTTCTCTGATTTTGGATCATTCGGATTGTGCTAGCAGACAAAGGAGCAAAGTAAAAACCAAAGTAAAAAGCAGACATTGTTTATCTTCTTCTATAATACAGCTATTGCAGTGTTTGAAATCTGTGTGTTGCAATGGCTTCTCTTGTTTACAGAAGGTACGTAGTAAACGACGTGAGACAATGATGGTGACATTGAATTGTTTTTACGATTCGAATGTAAGCAATTTGCACGTTGTTATCTAATACAGATTAATGTTTGGTTGAGGT