Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10840 LG2 48967854 48972707 PREDICTED: GPN-loop GTPase 2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryo development ending in seed dormancy, chloroplast organization, shoot apical meristem development, developmental process, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, cell division
Cellular Component   located in   nucleus, nucleus, microtubule, nucleus
Molecular Function   enables   GTPase activity
Pathway   B 09182 Protein families: genetic information processing   C 03021 Transcription machinery [BR:ko03021]
SNP Position Effect Amino acid change
T/A,* 48967875 5_prime_UTR_variant
T/C 48967877 5_prime_UTR_variant
T/A 48967882 5_prime_UTR_variant
T/G 48967887 5_prime_UTR_premature_start_codon_gain_variant
T/A 48967898 5_prime_UTR_variant
G/T 48967910 5_prime_UTR_premature_start_codon_gain_variant
G/A 48967921 5_prime_UTR_variant
A/C 48968012 5_prime_UTR_variant
G/A 48968052 5_prime_UTR_premature_start_codon_gain_variant
T/C 48968060 5_prime_UTR_premature_start_codon_gain_variant
G/A 48968084 5_prime_UTR_variant
G/T 48968099 5_prime_UTR_variant
T/G 48968117 5_prime_UTR_variant
C/A 48968198 5_prime_UTR_variant
A/G 48968202 5_prime_UTR_variant
T/G 48968212 5_prime_UTR_variant
A/G 48968227 5_prime_UTR_premature_start_codon_gain_variant
T/A 48968235 5_prime_UTR_variant
A/T 48968237 5_prime_UTR_variant
C/A 48968248 5_prime_UTR_premature_start_codon_gain_variant
G/T,* 48968250 5_prime_UTR_variant
C/T 48968300 5_prime_UTR_variant
G/C 48968305 5_prime_UTR_variant
G/T 48968359 5_prime_UTR_variant
A/G 48968361 5_prime_UTR_variant
G/C 48968374 5_prime_UTR_variant
T/C 48968385 5_prime_UTR_variant
T/C 48968398 5_prime_UTR_premature_start_codon_gain_variant
G/A 48968549 5_prime_UTR_variant
C/T 48968551 5_prime_UTR_premature_start_codon_gain_variant
T/C 48968565 upstream_gene_variant
T/G 48968659 upstream_gene_variant
A/C 48968816 upstream_gene_variant
G/A 48968941 upstream_gene_variant
C/G 48968948 upstream_gene_variant
T/C 48968955 upstream_gene_variant
A/G 48968960 upstream_gene_variant
T/C 48968962 upstream_gene_variant
T/A 48968975 upstream_gene_variant
A/G 48969037 5_prime_UTR_variant
A/C 48969196 upstream_gene_variant
G/A 48969309 upstream_gene_variant
T/C 48969328 upstream_gene_variant
T/C 48969363 upstream_gene_variant
T/C 48969369 upstream_gene_variant
C/T 48969373 upstream_gene_variant
G/A 48969475 splice_region_variant&intron_variant
C/T 48969488 upstream_gene_variant
C/G 48969573 upstream_gene_variant
T/G 48969628 upstream_gene_variant
T/A 48969760 upstream_gene_variant
T/C 48969813 synonymous_variant p.Leu88Leu
A/T 48969847 splice_region_variant&intron_variant
G/A 48969955 upstream_gene_variant
T/G 48969977 splice_region_variant&intron_variant
G/T 48970070 missense_variant p.Lys127Asn
G/A 48970091 splice_region_variant&intron_variant
C/T 48970268 synonymous_variant p.Leu166Leu
T/A 48970356 upstream_gene_variant
G/T 48970365 upstream_gene_variant
A/G 48970465 missense_variant p.His202Arg
C/T 48970469 synonymous_variant p.His203His
C/T 48970532 upstream_gene_variant
C/A 48970537 upstream_gene_variant
T/G 48970545 upstream_gene_variant
A/G 48970557 upstream_gene_variant
G/A 48970565 upstream_gene_variant
T/C 48970580 upstream_gene_variant
C/G 48970628 upstream_gene_variant
C/T 48970727 upstream_gene_variant
T/G 48970750 upstream_gene_variant
T/C 48970876 upstream_gene_variant
G/A 48970885 upstream_gene_variant
A/G 48970888 upstream_gene_variant
T/C 48970981 upstream_gene_variant
C/G 48970987 upstream_gene_variant
C/T 48971189 upstream_gene_variant
G/A 48971277 upstream_gene_variant
G/T 48971297 upstream_gene_variant
G/T 48971332 upstream_gene_variant
C/T 48971370 upstream_gene_variant
G/A 48971458 missense_variant p.Asp236Asn
T/A 48971460 missense_variant p.Asp236Glu
A/C 48971461 missense_variant p.Ile237Leu
C/A 48971502 upstream_gene_variant
A/G 48971506 upstream_gene_variant
T/A 48971698 upstream_gene_variant
G/T 48971845 upstream_gene_variant
C/T 48971996 upstream_gene_variant
G/A 48972004 upstream_gene_variant
A/T 48972060 upstream_gene_variant
T/G 48972110 upstream_gene_variant
A/T 48972119 upstream_gene_variant
A/T 48972132 upstream_gene_variant
T/A 48972219 upstream_gene_variant
T/A 48972229 upstream_gene_variant
C/A 48972282 upstream_gene_variant
T/G 48972307 upstream_gene_variant
C/A 48972355 upstream_gene_variant
C/G 48972384 upstream_gene_variant
A/T 48972497 missense_variant p.Asn297Ile
C/T 48972565 3_prime_UTR_variant
C/A 48972571 3_prime_UTR_variant
G/A 48972593 3_prime_UTR_variant
T/G 48972603 3_prime_UTR_variant
T/C 48972611 3_prime_UTR_variant
C/T 48972620 3_prime_UTR_variant
T/A 48972638 3_prime_UTR_variant
A/C 48972671 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10840.1
MVFGQVVVGPPGSGKTTYCNGMSQFLSLIGRKVAVINLDPANDSLPYECAVNIEDLVKLSDVMVEHSLGPNGGLVYCMDYLEKNIDWLEAKLEPLLKDHYLLFDFPGQVELFFLHSSAKNVIMKLIKKLNLRLTAMHLIDAHLCSDPGKYISALLLSLSTMLHLELPHINVLSKIDLIESYGKLAFNLDFYTDVQDLSYLQHHLDQDPRSAKYRKLTKELCEVIENFSLVSFTTLDIQDKESVGNLVKLIDKCNGYIFTGIEASAVEFSKLAVGPVDWDYYRVAAVQEKYMKDDENNDDNE*


CDS Sequence:
>Vu_10840.1
ATGGTGTTTGGGCAAGTAGTAGTTGGGCCTCCTGGCTCTGGCAAAACAACTTATTGCAATGGCATGTCTCAGTTTCTAAGTCTCATTGGAAGGAAGGTTGCTGTTATCAATTTGGATCCCGCTAATGATTCATTACCCTATGAATGTGCTGTGAACATTGAGGATCTTGTGAAATTAAGTGATGTAATGGTGGAACATTCACTTGGTCCAAATGGGGGTCTTGTGTACTGCATGGATTATCTTGAGAAAAATATCGACTGGTTGGAAGCAAAATTGGAACCTCTTTTGAAAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTCTTTTTCCTTCATTCAAGTGCCAAGAATGTCATCATGAAGCTCATAAAGAAATTGAACCTAAGGTTAACTGCAATGCATTTGATTGATGCCCATCTTTGCAGTGACCCTGGGAAATATATTAGTGCATTGCTTTTATCCTTGTCCACGATGCTACATCTAGAACTCCCTCACATAAATGTCTTGTCTAAAATTGATTTAATTGAGAGCTACGGAAAGCTAGCCTTTAACCTTGATTTCTATACAGACGTGCAAGACTTGTCATATTTACAACACCACCTTGATCAAGATCCTCGCTCTGCTAAGTACAGAAAACTCACAAAGGAACTATGTGAAGTTATTGAGAACTTCAGTCTTGTGAGTTTTACAACCTTAGATATTCAGGACAAAGAGAGTGTAGGGAATTTGGTGAAGCTGATAGACAAATGCAATGGGTACATATTTACCGGTATAGAAGCAAGTGCAGTTGAATTTAGCAAGCTTGCAGTTGGTCCTGTTGATTGGGATTATTATAGAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATAATGATGATAATGAATGA


Promoter Sequence:
>Vu_10840::LG2:48965854-48967854(+)
GCAAATACATTACTAAATCAATATAGTTCGTAAAAATTAAATCTAGTTACACGCCTTAAATCAGTAAACTTCAAAAATTAGTACACATTGCCAGAAAAATTAGCAGAACATCTGGGGAATCATACAAAAACTTAACATTTACAAATCAATTTTCGTTTTTGATGAAAAACAAGTGAAGGGTAGAAGGCAGAGTTAGATCCACTTATCTCAACGAACTAGAAAAAGAAAAATAAAACAAATAGTAATAGAGAGATTTAGCAATACATCTTTGGATGGATTCTTGTTGAGGTTTGATACTTTTTTTCCACTGGTTAATTTCACAACCTGGCTAATACTTTTGTAAACACAGAATTATCAGTCAAAGCAAGTGCTGAAATTGATGCCTCTGGTTTGTTCGAATTATCAAGAAACAAGAGACACCAGATCCAGGGACAGAAAGATCTGAACTAGAGTCAAACACTAGAAAACCAAGAAGAATTATGAAATGATATATCTGTAGATACAAATCCAAAGAGGTTAGTCAGAAGAGACAGACCTTGAGTGTTCCTTTGCAGTGGTGGCATCTGAAGCAAGCCTTGTGGAACACTCGATTATCCGCAGTTAACTTATCAACCAGATAAACTGTTTTGTCACAAGCCATGCATTTCTGAGTTGTTCCTGCAAATGCCATATTTCCGAATTCTCTTCCCTTAGCAAGGTGCAACAGAGCTATATGATCCCTCTGTAGCGCCTTAAGTAGATTTTTCTTGGTAAGAGGAAGAGCAAAACGATGAAAAAGAGGAGATAAGGCAAAAGGGGGGGTGGTGAAATGTGGGAGGCAGGAGACAAAAGCAGACACCCCAACAAATATACTGTCATTGACAATCATTTTGTCTAATATTTTAACCACCTAACTCACATTTTCTCTTACACATTTTTAATGTCTTCAACTGTTAAGTTAAATGCGTCACACTAAAAAACAAGAAACAACCACAATAACATAATTTGTACGCAACAAAGAAGATGAAGTTTAACTTTTGAGCCAAGTGTTATGGGCATTTTTTCTTTTCTACCATCACCATTACATTTGTTTTTTTACTACTTTATCAAGTTTGGAAGATGCAGAATCATTATTTCATATATAATGTAAGATAGGTGGAGACCATGACCCTACCTATCATAACTCACTGGCGTTTGACCTAAATCTTTTGCAAAGTCCTTTCTGTTTATTATTGTATCATTCAATTAAATTATAGAATAGCCAAAGTCTCCAACTGAGTCCTTATTTGATTAATTAACATTATAACAAACTAGTAAGAATACAGCTATCATTATTATGGTTATGAAATACAGTCAATATAATTAAAAAAGTTAAATTATTATGAACCAAAAACAGTTATCAAGATATAAAGAATAACATTGTAAAAAAAATGTAAGAAAATAGTTACAAATATAATTATTTATTAATGATATAATTAACTAAAAAACAGGTACAAGATGATTACATTTGTAACGTGGGGTTCCATCTGGCTTGCTTTCATTGTCGAATCCCACTTTTTAAACAGTATGACAGATTTTTCTTGAGTTAGAAGGGATGAATTGCATTCTTAAGTTATAATAACTGTATAGGCTCCTGCATTTTCTTAAGTTGCACTAGTTTTACGTTTACCATTTGGAGTCAAATATGTTATGATATATTGGGTTGGGGATTTTACTTGTTTATGGAAAAGATGGGGGATCAACGTCAGGGTGTATAATTTAGCACAAAGTACCTAAAATGATGGGTTTGGTGTGTCTGCAATCTTCAGTAACACTCCAATTATGATGACAGCTTGCATTTAATATGTTTTTGTCCCACACCATGCAACTTCAAAGTCTGTATCTAGGTAAGTGAAGTGTCGCCAACTCTAGCTTTAGATTTAATTAATCTGTCAGAATCTGACAAGGAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCT


Gene Sequence:
>Vu_10840(+)
TAATTATTTTGCAAATAAAGTTTTTTTTTTTTTTGGGTTTTACATCTGTTGTATGTGGGCGGTTTTCGGATAGAGATAATCAGTGCTTATGATTTCTGCTTCTGCTTGTATGGTGTAATGCTGAGTCGTGTTGATTTGTTTTTAGAGTTTCTGGATTGAGTGTATGTTGTTTGATGAAATGCATGGCTGTTTGGTTAAGTGATTTGTTGTCAAGATCGCGAGTATGGGAGGATCGTGCAAGACGGGAAGGTCGCGGATTGCAGTATCGGTATTTTGCTCGTGAAAGCATTTGTGCGGGCTCGAGCTTTGTCCAGTTCGGATGCCAACACATGTAGTTGGGCTTTCCGGATAGGGTTTATAATGACCCAATTTTAAAAAAAATAATAAAAGAGACCTGTTTTTTTCCTAGGGTTCTCCATCGCAGATCAGAACCAAACAGCATCCTGCTCTGGTCGACTGTGTCCCCGACCATCACAGCGTACCCATTATAACGCTGGCGTCGTAGGTATCAGCCATCACAGCACTCGCGTGTTATTGCCGACGCTTGCATCACCGTCGATAGGGTTCGCGTCACTATCTCTTACTCTTGCATCACCATCACCGGCGTTGCCTTCATCACCACCGGCTTTGCCTTCATCTTCGCCGGTCTTCGCCGACAGTGACACCAACTGTTGGGGTGCGTCGATCTTTGTTTTGGCTGTTGTGAGTTTTTCTTCTCAGAGATACTTCTTATTTTATTATTTTAGTAAAATGTGACAATTTAAAACATATTTCTTCTCAGTTTTCTGATCTAAAATTTGTTTTTTCTGGTCTTGCTGCCACTTAGATTTGGAGTGTTATGCAAAGTTCGTAATTTTCACTAATCCATTATGAATTTATTAGTTGTTATGAGTTATTTTATGTTATGAAACTAGTATTGGATGTAAACATTTATAATTTGAGTTATTTTTGGTCGCATTATTACTATTAGTTTATAATTTATTTTCATGTACATAAATATAGTTTTCCATAAATCTTCCTAACTCTTATGGTTGGAATCCTTGAGTTACCATCTCTTATCGTCTTCCTATCCTCCAGCTTGACAACTGATTTAACTTAAATTAGTTATTAAGATTCTGTTTTTCCCTTTTACAAGGTTTAATTCGACTTATTATTATTAAGTAGGGAGATAGCATTTGGTAACAAGGAAGGAAAATGGTGTTTGGGCAAGTAGTAGTTGGGCCTCCTGGCTCTGGCAAAACAACTTATTGCAATGGCATGTCTCAGTTTCTAAGTCTCATTGGAAGGTAAGCCTTACTTTGTGTTTTTATTATTAATGTTGATGGTAGTTTTTTTTATTAATATGGGGTATTATATTTGCCTTACGTTGCTTTGGAATGTAGGAAGGTTGCTGTTATCAATTTGGATCCCGCTAATGATTCATTACCGTATCCTTTTCACTTTTTGTTCTGAAAAGTAAAATCTTATAGTTCAATTGATGCATCCCTTTTTAGATGCATAGTTCAATCGTTATGGTTTCCTTTAATGAAGAATATAGCTATGAATGTGCTGTGAACATTGAGGATCTTGTGAAATTAAGTGATGTAATGGTGGAACATTCACTTGGTCCAAATGGGGGTAAGCCACTTCCTTTTCTTGTTTAAATTATTTATTTATATTTATTTACATTTTTTTATTTTAAGAAATTTTCCTTTTTAAAGCCATGGAACCACGGTACTGCGGGTATTGGACTACTGAAAGTATAGACATGAACTGATGGTTTTTTAGATTATACTGTGTAAATTTATGACAAGAAGTTAAACAAGTTACTCTGAGTGCAATGGTTCTTGTAAAAGGAACTTTGAATGTGTCACACCAGCTTTTCTAATGTACTGTGTATACGTATTCAGAAGTTTCTCTTATCTTGTACAAACAGGTCTTGTGTACTGCATGGATTATCTTGAGAAAAATATCGACTGGTTGGAAGCAAAATTGGAACCTCTTTTGAAAGGTCAGTGCATTATTGTGCCATAATTTGTAGATGTACAGGCTAAATAATCAAACTGTAAATTCTAACATTCTTCTTATATAGACCCTAATTGATCAGTTAACAACACACTTTGGTAACCTGACAGTATTTACATTTCAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTCTTTTTCCTTCATTCAAGTGCCAAGAATGTCATCATGAAGCTCATAAAGAAATTGAACCTAAGGGTATAGCACTGTCCTTTACGTCTTGCTGGTGTCAAACTGTATGATGTTTTAAGAACTGATTTATGTGTTTATTCTATGCAGTTAACTGCAATGCATTTGATTGATGCCCATCTTTGCAGTGACCCTGGGAAATATATTAGTGCATTGCTTTTATCCTTGTCCACGATGCTACATCTAGAACTCCCTCACATAAATGTCTTGTCTAAAATTGATTTAATTGAGAGCTACGGAAAGCTAGGTGCAGTCATTACTCGTTTTCAGATGTCAGCCTTTAACCTTGATTTACAGTGAGAGATTTACATGCTGACTTTATATTTTATTGTTGCAGCCTTTAACCTTGATTTCTATACAGACGTGCAAGACTTGTCATATTTACAACACCACCTTGATCAAGATCCTCGCTCTGCTAAGTACAGGTGTGGTGTGCTATGGTGATTCTTTGACTGCTAACCAGTTTTTTTTTCTAATAGTATTTTGATGTTTTGCAGTTCTGTTGATAATTTTTAACTGTTTTCTTTCTTAAGATGTAGAATTTAACACCACTTCTGTCTGGATTATCAGTGTAAAATTTAGTTTATGGCAGCTCATTTTTTTCTTCTTCTTAGTTTCTTCTTCTAGAAATGTTTATGGAGAAAAATTTACCCAAAGCGACCTGTTGCATCTTTCTATATCTTGTCTACCCTGGCCGTTAAGACCACACTGAACTGTTGCAAAGCTACATTTGTTTTAAATTGTTTATGTATATTCCCATTAGACGAAAAGGAATAAAGACAGATTTTAAATTTTAGTGTTTCTGTCAGCAACTCCCTCTTTTGATTGAGAGATACTGGTCTAAAATAATAATCATGCACCAACGTTGAATATATAGTTTCTCATTAGGGTGCTCCATTGGTCGTAGCAACTTATAATGACAAATGCGCTGCAATTTTATTTAAAAACAAGAAGAAATATGCATCAATTGAATCATTCATTCATTTGCCTTACTTGCTATGTTTATAATAGACTAGGATCCAATCTGCCGTGATGTTGAAATATGCCAACGTGGGTGGATTAATCAAATTCCTCGGTTGAAGTTTGGGGTCTATATTTCATTATTTCGAGTACGTATGAATGTTAGCCTTACAAAGTGAATAAAATGTTGGAAATGGTTGTCAAGGAAGGTTTAAATGTGTTAGATAGATATTATTTTATGAGTATACATCATAGTTAACGCATTCTTGTTGATGACCTTTTTTTGTTCTCGAATGCATCCTTAAGATTGACATTTATTGTTATTCTGAGTAGCATTAATCTTAATGATATTTGCAGAAAACTCACAAAGGAACTATGTGAAGTTATTGAGAACTTCAGTCTTGTGAGTTTTACAACCTTAGATATTCAGGTAAACTAAGTATGCCCAGAATTTTCATCTGTTTTCATCAAATGTTTGGAATCCTAAGTCGGAATTTGTATTTTCAGGACAAAGAGAGTGTAGGGAATTTGGTGAAGCTGATAGACAAATGCAATGGGTACATATTTACCGGTATAGAAGCAAGTGCAGTTGAATTTAGCAAGCTTGCAGTTGGTCCTGTTGATTGGGATTATTATAGATATCCTTTTTTTCGTCATCTATTCTGAATTCTGACATCTTGAGATGATTTATTTTACAATGTACCATAACTTTCACTATTGCATGCCAGAACTACCCTTACTCATTGCTTTCCAATGCATATACTGTTTTTAACTGATTCTTGGCAGCCTGTAGTAACAGTGATCGTGAGTGGTATCATATACATTATAAACACAATAGTCGTCTTTCCTTTTGGGAACATTTTAACTAAATTATTTTGGAATATAGATTCAATGCATTAAGTAGGAAGAAATGACTGGTCGAAACATGGAAGATTCCTGTAAAACCTCTCTGGAAAATGCTCCGGTTGGAGTAAAAATTGCCCAATTTTTTAAATCAGCTGCTGAGCAGCATTACGTGGCCCAACCTTTTAGAGGATTTGAACATCATGATGAGCTCTGTAACTCAGTGCAGATAAGTGGCCAGGTCTCGCCATTATTCCTTTGAGGATTTATGACATTTGTATTTGATATGTAGAAATCATGACATTGCTCTCAATTCCATTAGAACATAATCTTGCATTATTGATGCCAATTGTAGATTTTTTTAGACAATCACTTGTGATATCATTTATGCTTTTGAGAAAGCTTCCCAGCGAATTGAACAATACTCTAAGTTATTTTTGAGATTGCTAATGCTGTTGTCTTAACCAGTGTTCTGCTAATCAATGGATGCATCAGTTCTGTTGCCTATTCTTCTTTTACCTCTTTCCTGGTCAGACTCTTTTAATTCTGAGCTTCCCTTAACTCAAAATCTACAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATAATGATGATAATGAATGATGGGAAAGGTGAATAATTGAAAGAGAATGGCACTTTGGTGAGTAAATTTTACTTTCTCCATTCGCTGTTACGTTGCTTTGGCTGTTGTTTTGCGTACTTGTGACACCATGGTGCACTCTACCGCTTGTGCATAAAAGAATGTTTCAGATTTGGCTTTATATATTATTATAATTATAATCCTGTAGTTCTGAATG