Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10910 LG2 49608822 49609646 PREDICTED: transcription factor HEC2-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, stigma development, carpel formation, gynoecium development, gynoecium development, gynoecium development, ovary septum development, carpel formation, carpel formation, carpel formation, transmitting tissue development, transmitting tissue development, regulation of transcription, DNA-templated, carpel formation, transmitting tissue development, ovary septum development, ovary septum development, regulation of transcription, DNA-templated, ovary septum development, stigma development, stigma development, response to temperature stimulus, stigma development
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein dimerization activity, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/*,G 49608864 missense_variant p.Gln15Glu
A/G 49609129 missense_variant p.Asp103Gly
A/C 49609308 synonymous_variant p.Arg163Arg
G/A 49609319 synonymous_variant p.Val166Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10910.1
MDTVEQLKLEEEEEQQQQQMDITTMMMQHLPQFSEPYCDTDTMDGFHPQEDFYSNNNNIRSGSTMPLADLLDNNPPSHLPWSSYSFTHLIPSPTSSAIISFSDNSNNPTPIMLQQTPTEGATATANPYGEKRSSMAAMREMIFRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASANNIRPLVGVNAPGIGFPVAMSGSIRTATTSGSNFTPYFPLPNTYD*


CDS Sequence:
>Vu_10910.1
ATGGACACTGTGGAGCAGTTAAAGCTGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGATGGACATCACGACCATGATGATGCAACACCTCCCTCAATTCTCTGAACCCTATTGTGACACCGACACCATGGATGGTTTTCATCCCCAAGAAGACTTCTACAGTAACAACAACAATATACGCAGTGGTAGCACCATGCCACTGGCAGATTTACTAGATAATAACCCTCCCAGCCACTTACCTTGGTCCTCTTACTCATTCACGCACTTAATACCATCACCCACATCCTCCGCTATAATCTCTTTCTCCGACAACAGCAACAACCCTACCCCAATAATGCTTCAACAAACCCCAACCGAGGGTGCAACTGCAACTGCAAACCCTTACGGTGAGAAGCGGAGCTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGAGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATCCTGCAGAGACTGGTCCCTGGAGGAACCAAGATGGACACCGCGTCGATGTTGGATGAGGCAATTCACTACGTCAAATTTCTGAAAACGCAGGTTCAGTCGCTGGAACGCGCTTCTGCTAACAATATTAGGCCCCTTGTCGGTGTTAATGCACCAGGGATAGGGTTTCCTGTTGCTATGTCTGGTTCTATTAGGACTGCTACCACTTCCGGTTCCAATTTCACCCCTTATTTTCCTCTGCCTAATACCTATGATTAA


Promoter Sequence:
>Vu_10910::LG2:49606822-49608822(+)
AAATTGGTTGAAAGAATAGCTGAGTCCAACAACATTTAATGTATATAAATGTCAATAAAAGATGACAATAATTATTCTGGACACTTATCTATGAAAGATACATGGCCTTCAAATTCAATGCCACGTAGGTGACGTAGCATCTTTCATTTATCATTCACTACAATACAATCATCCTTCCCTGCATTATTAGTCAATGACTTCATTATCTCCTAAAACCATAAATTCAGGCATTTACAAATGAAATCTAACCTTCACCCGATTTATAATATTCACCATATTTATAATATCCACACTGAAATCTAAATGTAAAATATTTTATTATCCACACTACTAAACTAGGAATGATAATGAGAGTTCATTACATAAAATAGATTAGAATAGCTTAACTGATATAAGATATATGAGTTAATAGTTTTAATTCGTCATGCATAACTCTGAGTTTTTTCATCAACTTACATAAATTGAAAAATAATATTTAAAATTTTATTATAATTTTTTAATCTCAAACTTAAGTATCTAGTAAAAATAAAGATTAACTAAAATACATTTACCTGTGAATTGACTGTATGATTTGTCCTGGGTCACCATCCTTTAGTATTATTAAATTAATATTTTAATTATCTTATCATTTTTACAAATTTTCTTAATATTTATAAGTAAACATTGAACGATATCTATTTAATGTTTTCAAAATATACGAAGTACTTAATATTTCCTTCAATTAATTAAAATAATTATTAATGAAAAATTATTATTAAAAATTATTTATTCAGTTAACCCAATAAGCTATATATAAATCCCCGATAAATATTGGATAACTAGGCTATCTATGTCTAGTATTATCTGTCATTAGTTTTCTTAAACAAAGCTTTGAAATTTTATGGAGGAGTTTTATTTTTATTTTTGATAAAGCATGGCTATTTTTTTAGAGGGGTAGAGCTTAGAGTATAAGGACTATGATACATAATAAAAGATAAAAAATATTCTGCTTCCAATATTTAGTGAATCTATAACTATACATTAAAAAGAATAATAAATGTAAATTATTTTACTACAACAATTTATAGCATAAACGCGATAACGAAGGAAATAATAGAAGTTATATATCTTCCCACGTACTGATTCCCTTGCTATATATTAAATAATAAAATATTACATACTTGCATATATCTTTATAAAAATACTAATTATATTCACTTGAATAAAGACTGGCTTATTAACAAAGAGTTCGAGTGTTTGTATTAATTATGAAAAACTATGTAAATATGAATATCATATTCTTTTAAACCATTAAATGACAATTATATGTTCAATTCCCCGGTTTCTTAATTATTTAACGAGCTTGTTAATTTGGCTGTACATACTTATAATAAAATTTACAAATAATAGTTCTTAATATTTTTCAGTTATTTCCTTTTGTTTAATGAGAGCTTTAACAATATGTTCTTTAACATACTCGTTTTCATATATTTTATTATTTATTAAAATTAAATAATCTGAGTTTCGATAGCAAAGTTCACCAAACATTTTTGTAATTACTTGATCTTAATAATTCACACAGGTTGGAGTATCTTCAGTAATAGTTTATAAGAACAATATTATAACATGTTATATATATATATATATATATGTGTGTGTATGTATGTATATGAGAGGCATAAACATGTAGAGAGTCACCGCTTCCCAGGTGTTGATCATTTTCTGCAGTCTGTTCCCAATATCACTATTTTATTGATTTTATTTTTTTCACTATTGCCCCCTTCTTTCTCACCATTCTAACAAACTCTTCTCACACTGCAAATTCTGAGAGAAACTCAACTCCCGATTCCACTGCTAAATATATATTCTTCTTTTTCTTCCCCATCCCTCTGTACCCTTCTGCTAATTTTCTCAGTTTTTTCAGTTACCCTTTAAATACTTGTCCATCTTTTTTCCTTTACACCTCACTCTCACCATTTTCACTTCACCTTTTCCTTCAGCAAGCTGAAACAACCCATTAA


Gene Sequence:
>Vu_10910(+)
ATGGACACTGTGGAGCAGTTAAAGCTGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGATGGACATCACGACCATGATGATGCAACACCTCCCTCAATTCTCTGAACCCTATTGTGACACCGACACCATGGATGGTTTTCATCCCCAAGAAGACTTCTACAGTAACAACAACAATATACGCAGTGGTAGCACCATGCCACTGGCAGATTTACTAGATAATAACCCTCCCAGCCACTTACCTTGGTCCTCTTACTCATTCACGCACTTAATACCATCACCCACATCCTCCGCTATAATCTCTTTCTCCGACAACAGCAACAACCCTACCCCAATAATGCTTCAACAAACCCCAACCGAGGGTGCAACTGCAACTGCAAACCCTTACGGTGAGAAGCGGAGCTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGAGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATCCTGCAGAGACTGGTCCCTGGAGGAACCAAGATGGACACCGCGTCGATGTTGGATGAGGCAATTCACTACGTCAAATTTCTGAAAACGCAGGTTCAGTCGCTGGAACGCGCTTCTGCTAACAATATTAGGCCCCTTGTCGGTGTTAATGCACCAGGGATAGGGTTTCCTGTTGCTATGTCTGGTTCTATTAGGACTGCTACCACTTCCGGTTCCAATTTCACCCCTTATTTTCCTCTGCCTAATACCTATGATTAA