Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10942 LG2 49850476 49851138 PREDICTED: transcriptional activator Myb-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, positive regulation of auxin mediated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, lateral root development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of auxin mediated signaling pathway, positive regulation of auxin mediated signaling pathway, regulation of transcription, DNA-templated, lateral root development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, lateral root development, positive regulation of auxin mediated signaling pathway, regulation of transcription, DNA-templated, positive regulation of auxin mediated signaling pathway
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 49850597 missense_variant p.Ser41Asn
T/C 49850649 synonymous_variant p.Ile58Ile
C/T 49850880 synonymous_variant p.Ile135Ile
A/G 49850881 missense_variant p.Asn136Asp
G/C 49850902 missense_variant p.Glu143Gln
A/G 49850907 synonymous_variant p.Ala144Ala
G/A 49850986 missense_variant p.Gly171Ser
A/G 49851012 synonymous_variant p.Val179Val
C/A 49851123 missense_variant p.Asn216Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10942.1
MEAINRTSSTASSSSDSSSSDSNPHRIKGPWSAEEDRILTSLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPFSPQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKAFLDINVNNANNEAATSSAPSRSFEDDPLTALTLAPPGLSGAAVAEDTVLDHRVSPESAPAGFWDMMRDVIAREVKEYVSSNFSDNSNFH*


CDS Sequence:
>Vu_10942.1
ATGGAGGCTATCAACAGAACCTCCTCCACCGCTTCTTCTTCCTCCGACTCTTCCTCTTCCGACTCCAACCCCCACAGAATCAAAGGTCCCTGGAGCGCCGAGGAGGATCGGATCCTCACCAGCCTCGTCGACCGCTACGGACCCCGCAACTGGTCCCTCATCAGCCGCTACATTAAAGGCAGGTCTGGCAAGTCCTGCCGCCTACGGTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGGCCCTTCTCTCCCCAAGAGGACGAGACCATCATCGCCGCCCACGCCCAGTACGGAAACAGGTGGGCCACCATTGCCCGTTTGCTGCCGGGTCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGCTTTTCTTGACATCAATGTCAACAACGCCAACAACGAAGCAGCCACTTCTTCTGCTCCTTCTCGTTCCTTCGAGGACGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTCTCTCTGGCGCCGCCGTGGCCGAGGACACCGTACTGGATCACCGGGTCTCTCCCGAGAGTGCGCCGGCGGGGTTTTGGGATATGATGAGAGATGTGATCGCGAGGGAAGTGAAGGAATATGTGTCTTCCAATTTTTCTGATAACTCGAACTTTCATTAA


Promoter Sequence:
>Vu_10942::LG2:49848476-49850476(+)
TTTAAACTTACAAAAAGATTAATGCTGCAATTTTTCATTTATTTTAAAATTCACTTCGTCCACCTTCTCGGTGTTCTTTTTTTTGTACATAAAAATATTAATTGATCTATATTTTTACGTTTAGATAACTCTATGACGTGAACTGGGAGACCGTTAATGAGATAAAATAAAAGAAATACCAATTATATCTAAAAGTAGCAAACTGTATATCGGAACTTACCGAGCAAAGTGAAAAAAAGTAAGGATAAATAGAAATACGAAACGATGGTTATATAATTTTTTTTGAAGTAATAATAATTTGTTGGTGATTTATATATAATGGAAGTGTGTTGTGGAACTGGATTAACCGTGGGTTGATAGAAGGCGGTGAGAGAGGCGAGGAAAAGGTGGGGTGAGAGGCTAAAAAGTCAAAAGGATTGAATTTGAATCACGTGAGATTCTTACAGGCTGGAGTGGGACCTTCCTACGTGGAGGAAGTTGAAGTGTTTGATTTGATATGATTTTGGTTAAAAATATGAAAACGAAGATTTTGGTTTTGCAGCACTGATTGCTTCAGACCACTTTCACTAATTTACTTGGTTGGTTATAGATAGAGCAGAGATGAATTTCTGTTTTACATTACAGCTGTATCTCTATGTCCCTCAGCCAAACAATAACTAGTCAAAAACCCTTTCGACCCCACTTGCTCTCTCCTTTTTAGTAATCTTTCTATTCTACTCTTTAAATTAAAAATAAAATAAAATAAACGTTTCTTGTGTGCTAAACAGCTCAACTTTTCCTGTCATCTCATGTTTTAAACGCACCCAACAAAACACCAATTAACAACTACTTCTACCCCTAAACGCCAATTAACGACCACTTTCCACCCCTAAACCTAATATTCTATCCACCTTCAATTTTTCAGTACCATAATCGCTTTTAAATTCAACCCCTCTTTTTATCTTTTTTTTCACTGTGCCTACCCTCCACAAACCCGCACTCGAGGAAGGGAAGGGAACAAACACACAAATACAAATAAATAAATAACCTAATATTTTAACATTAATGCAATTAGCTACATGATTTGATAAATACTTAATGATATATTTGGTTTAGGAAAGAAAATAAAAAAAATGGTTGTGATTGAAATGAAAATACAAAAGTAAAAAACAAATGGACAATACATTTTGTTTAGTTTTTCCTTTCCGGTTTTAGAAAGAAGGCTAAACATGTGATCCCATTTATTTTTAATGATTTTCCGCCTGTGTTAAGGAAGGGAGATGATTTGTTATCTTTGTTTTGTCTGGTAAGCTCATCTTAACAAAGAATATATATAAGAAAAAGATAGGAAAAGGAAGGTATTGTATTTATTTATGTATGGATGATAAAATGTAAAGAAGAGGGATAATAAATGAAGTGGTGTCTCTCTACAGCTGTTTGATAGGGTGGGGTTTTGCAAAGGCGAGTATATTTGGAGTGTTTATCGTACGTGTGAAATGGAATATAGAATATGTTTGTTATTCTAACCTGAGGATGCCTAAATAGAGGCTAACTGTTATGAATAAGAAAGCGCCAAAATAGTAAGGAGAAGTTGACAGAATAATTAAAAAGTAGAATAGCATATTATTATATGATTGATGAGAGAGTAGTAGTAGTAGCAGTAATAAAGAAATGGAAAATGAAGGTGGTGAGAAATTTCAAAGGGGAGAAAATGGTCAAAGAAAGTAAGGAAGAGAAAGTGTGACAGCGAGAAAGCTCGTTTTTCAGAAGCAGTGATAATAGTAATGGTATTAGTATAGATATGAAAACAAATCGCATCTCGAAGAGTCATACAAGTTAGACCTCCACACCCACCAACTATACAAAACCCCACTTTCCTGGAAGTACCCTTCCTTTACATCTTCCTCCCTTACCCGTTATGTTATAACTCACGCTGCCGCATGCACCTTTTCACTTCACTCTCTTCTTCTCCCTATATAAACACCACCAACCCCTACAACAACACTCCCTCATTTCTCCCA


Gene Sequence:
>Vu_10942(+)
ATGGAGGCTATCAACAGAACCTCCTCCACCGCTTCTTCTTCCTCCGACTCTTCCTCTTCCGACTCCAACCCCCACAGAATCAAAGGTCCCTGGAGCGCCGAGGAGGATCGGATCCTCACCAGCCTCGTCGACCGCTACGGACCCCGCAACTGGTCCCTCATCAGCCGCTACATTAAAGGCAGGTCTGGCAAGTCCTGCCGCCTACGGTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGGCCCTTCTCTCCCCAAGAGGACGAGACCATCATCGCCGCCCACGCCCAGTACGGAAACAGGTGGGCCACCATTGCCCGTTTGCTGCCGGGTCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGCTTTTCTTGACATCAATGTCAACAACGCCAACAACGAAGCAGCCACTTCTTCTGCTCCTTCTCGTTCCTTCGAGGACGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTCTCTCTGGCGCCGCCGTGGCCGAGGACACCGTACTGGATCACCGGGTCTCTCCCGAGAGTGCGCCGGCGGGGTTTTGGGATATGATGAGAGATGTGATCGCGAGGGAAGTGAAGGAATATGTGTCTTCCAATTTTTCTGATAACTCGAACTTTCATTAA