Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11054 LG2 50802916 50806857 PREDICTED: protein BASIC PENTACYSTEINE6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to ethylene, response to ethylene, response to ethylene, response to ethylene
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleolus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, protein binding, DNA binding, protein homodimerization activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 50803355 intron_variant
C/T 50803380 intron_variant
T/A,* 50803464 intron_variant
G/A 50803605 intron_variant
G/C 50803651 intron_variant
G/T 50804468 intron_variant
T/C 50804611 intron_variant
T/A 50804652 intron_variant
T/A 50804818 intron_variant
G/A 50804833 intron_variant
G/A 50805903 missense_variant p.Ala181Thr
T/C 50806031 synonymous_variant p.Ser223Ser
T/C 50806103 synonymous_variant p.Pro247Pro
C/G 50806394 3_prime_UTR_variant
G/T 50806566 3_prime_UTR_variant
A/G 50806585 3_prime_UTR_variant
T/A 50806684 3_prime_UTR_variant
T/C,* 50806715 3_prime_UTR_variant
C/T 50806738 3_prime_UTR_variant
C/T 50806755 3_prime_UTR_variant
G/A 50806807 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11054.1
MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRETSIGSGSMSSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYSTREMHTTDALPAAPITSEAGKSRRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK*

>Vu_11054.2
MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRETSIGSGSMSSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYSTREMHTTDALPAAPITSEAGKSRRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK*

>Vu_11054.3
MQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRETSIGSGSMSSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYSTREMHTTDALPAAPITSEAGKSRRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK*


CDS Sequence:
>Vu_11054.1
ATGGATGATGCTGGGCATCGTGAAAACGGTAGGCACAAAGCAGATCAATATAAATCTGCTCAAGGACAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGGGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGACAATGCAATTGCAACTCTTCAGTATCGAGAAACCTCGATAGGTAGTGGCAGTATGTCATCATGTCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTGCAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAAGCACATGAGTGGAAAAATGGTCAGGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCTGTATGTTCTTGTACCGGTGTCCTGAAGCAGTGTTACAAATGGGGCAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCAAACAAGAGGCATGCTCGTGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTCAGTCGCCTTGCCGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAATAG

>Vu_11054.2
ATGGATGATGCTGGGCATCGTGAAAACGGTAGGCACAAAGCAGATCAATATAAATCTGCTCAAGGACAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGGGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGACAATGCAATTGCAACTCTTCAGTATCGAGAAACCTCGATAGGTAGTGGCAGTATGTCATCATGTCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTGCAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAAGCACATGAGTGGAAAAATGGTCAGGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCTGTATGTTCTTGTACCGGTGTCCTGAAGCAGTGTTACAAATGGGGCAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCAAACAAGAGGCATGCTCGTGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTCAGTCGCCTTGCCGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAATAG

>Vu_11054.3
ATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGGGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGACAATGCAATTGCAACTCTTCAGTATCGAGAAACCTCGATAGGTAGTGGCAGTATGTCATCATGTCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTGCAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAAGCACATGAGTGGAAAAATGGTCAGGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCTGTATGTTCTTGTACCGGTGTCCTGAAGCAGTGTTACAAATGGGGCAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCAAACAAGAGGCATGCTCGTGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTCAGTCGCCTTGCCGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAATAG


Promoter Sequence:
>Vu_11054::LG2:50800916-50802916(+)
TAATAATAATTATTTTATTAAATAAAATAAAATTAATTTATAAATAATTAAATAATAATTTTTAAAAAATTAAATAATATTTATATATTAATTTAAAATATAAAAAATTAAAAAACTAAAAACTAAAAAACAAAAAAAGGCAACGGATGTCGCCACATCCGTAACGGATGTGGCACATCCGTTTTAATATATTTATAACAAATTTTTTAATTATTATTTAAATAATAATACATAAATTAAAAATTATTATTATTATTTTATTAAATAAAATAAAATAAAATAAATTTATAAATAATTAATTAATAATTTTAAAATAATTAAATTATATTTATATATTAATTTAAAAAAAAAATAAAAAAACTAAACTAGAAAACAAAAAAAGCAACGGATGTCGCCACATCCGTTAACGGATGTGGCACATCCGTTTTAATATATGTATAGTAAATTTTTTAATTATTATTTAAATAATAATACATAAATTAAAATTAATAATAATTATTTTATTAAATAAAATAAAATTAATTTATAAATAATTAAGTAATAATTTTAAAATAGTTAAATAATATTTATATATTAATTTAAAACAAAAAAAAATAAAAAAACTAAAAACTAAAAAACAAAAAAAGGCAACGGATATCGTCACATCCGTTAACGGATGTAGCACGTCCGTGGAAGAATTTTGTCTTCAACGGATGTTGACATCCGTTGAAGAAAAGGGGTGGGGTGTAGGATATTTTAAAATATAAAGGATAGTTTTGGAATTTTAAAAAAATGTGGTGGTGGAGGGAGCAAAGTGGGGTGGTGTAGGGAGTAACCCCCAATGTTCAAAGGAACAGTCTTGCGCAAAACAAGGCCCCGACCGATGTGTTTTTCTCACCCTGTATTTATTAAGTTCGCCTCCAACTTTCTGAAATGTAAGAAAACTGCTAAAACCAACTCATTGAAATATATTTTATTTTAGTTTTTATGCGGACACAAATATAAATAAAAACAAATAATTTTAAACTGAATAAGAAAATAGTTGACATGATTTTATTTTATTTTTTAATTAAAAAGTAATTCATTGTCTCAGAATAAATGTCTTATAAGAAGAAAAAACAAGTGTTATTTTATCTTTTCAATGTAATTATTTTTTTCATTTATACATCTAACAATACTATCCAAGCAAAAACATCTATAAATAAATGAATTACAATTAGATAAGTTTTTTAAATTGCTATTTTTTCATCCATTTATTACTTTACTTGATTTATACTTTGGGAAATATATTTAACTGTAGAGTACTGCGTAATATTATCAAATTTAGTTTAGTTGTGTATATAAACAATATAATTCCATATATAGATTATATACTCTAAATTTTCTGTATTTTTAGTCGACGTGACTTCTTGAATCGTAGAATTGATAGGCTTCTTTCCAACTATCCGTTATTTAATACTTCTGTTTCAAAGTTAATTCCTCTTCTTTGAAGCATTACATGAGCAGTAATGGCATCGTGGTGGCAAGCAAGAAGACCTGTGCCACTATCTTTACTTTCAACCAACCCAACCCAACAAATCACAACCCTAACGCACGTGCCCCGTGTCACACACCACACCAACACCATCATTCATCTCAATATCTTCCTTATATTTCTTTCCAAACACATCACAGATATAAATTACAGTGAATGGATGGATCAAAAACAATATTTTAAACAACTTTAACCATGAAAAGAATAATTTCTTTGTCCGTATTAATTATTTGGCAGCATGGTCGGTTTTAGCTTTCTTAAAGTCAAGATCAAAAAGGGTAAAAAAACTGAAAATAATTTGAAAAGGTTAAGGAAAAAAAAACAATAGTTATGCAGCGGTAAATAAATATGGATGTGCATCCAATTGGATGGTTGAAAGTGGAAAGACAGACAGGAACCGGTGACTTGATAATTCACGTATTTCATTTATTTATTTATTTTTATTTTTTCTGCGTTATAAAGAAATGATAAAACCTAGAAAAAGAAG


Gene Sequence:
>Vu_11054(+)
GAGAAAATTGTAAGTGGAAGAAGAGAAAGTGGCATCGCATAGGTACAGATACAGACACAACCCGGTAAAAACCCCATCCTAGTGCCACACGATTTTCTCTTTCTTCCTCTCTCTCTCTCTCTTTCTCTCTCTGGCGGAGGTTAGGGTTTCTTTCTTCGTTCATTTTTTTCAGTGTTTACTTTAGTTCTGCTATTTATCGTTAATTTATCGCTGTTTTATCGTTCCGACCCAATCCACCTTCAATTTATCGCTTCGTTTTGTTTTTGACTTGCTTTGACTTTATTTTTCTCACCTTCGAGTATCCGAATCTTTGTGCATCCTCTTATTTTGGTTCTTCTCTTAAGTATTTGCTCGCGTTCGCTGCAATTGCTTCTTCTAGATTTTATTTTTTTTGTCTATAGTTCTAGCCTTCCAGCTTTTAGTTCGGGTGCGACGTTTCGCTGTGTCGGAATCTGTTGTTGGTTCAAAATTTGGATCTTCAACCGCTTGAGATCCAGGAGCCGTGGCTTTAAAAAAATTGTACGGAAATGAGCTTCAGTTTTGTTATTTATTGACCCCTCCGGATATAAGGAGGGGTTGTGGTAATAGATTTAGCTCTGCTTTTTTGCATAAGTTTCCTGAGAAGAAAATTAAAACCAAAATTAGCTTTTACAGAAATTAAATGAGAGGCCTTTTATGAAAGGGTAAGCGTCTAATTTGATTTTAGATATTTTTTATGATGGGTAGTTTATTTAAGTTAATTGGGCAAACTTCATTTATTTTACTTTTTTTTTTACATAAACATTTATTCAGAATTCTGTCTTAACAAGTACTGCTACTGGCCCATGGGAACAGCTAGTAACGAGTGTTTTGGGTAGTTTCTCTTTGATACTTAGATTTCATTTGGTCATGATATTCAGCTATATATACATTCACTGAATGTAGTCAGGAGGAATATAGTTTTGGGTAGTAAAAAGAATGTCATCCGCCTGGCTCTTAATTGATATTAAGTTATCCATCAGGTCATAAATGCGATAGTCTTTTTTAAAAAAAACTTGCAGTTTTTGCTGTACTTAATCGTATCCAAATATGAGTCCCTGAATGATCACTTCTTTACCTTATTTCCTTTTGCGGTATCTTCCACTGTAGTTTTCCATTTTTATTCAGTTTTCACGTTGCACTGGAGTGCTGGATTGTATATAAAGAATTTTTTGTGTGGGTCTTTGCTTGACTCGTATTAGATCAGGACGTTGTTATGTCTCCGTTACCCATGTTTATCTTAGACCTTTTAATTAACAATCAACACAGGATATTTTTGGATTTTGGATGAAAATTATGTTACGGTTCAGAACAGTGATTTTAAAACTTGCTTTTCTGTCAAATAATATTGGGTTTAGGAGTTTGGCCTTCCTGTCTTGAAAGTACTGCTCGAAGAGGAGGACCTTGATCATATGGTTGTCATCTTCCTGTCTTGAAAGTACTACAATCACACTAAGATTCTTTCTATCCACTCATTTTATCTCTTCCCTTGCCCCCAACATGCTTTAACTTTCTTCATTTGTTCTACCTTAATGTTTCTTTTCGGTTTCCATGGAAGCTCTAAAATAATAATAATAATGATGACTAATAACTTTGATATGATATTGTGCTAAATTCTGGAACTTCAGTATTTTTCTATTGTAATTGCTGTGGTAATTGCTTACATCGTGGCTACTATTGGTGTAGCTGTGGTAAGCCTGCTTACTACATCATTACCATGTCTGCCATTCATATCCAACTGTTCCATTATTTCCTTTTAAGGTTTTTGGAAACTTCTAACTGTCTTTTATGCTTAAATGCAAGTATTTTGATCATACATGAAGACCAATAGACTTCCCCTGCGTTGCTAAAGTTTCCCTGCACTATTTTTATCCCAGATTTTCGTGTAGCTGAATATTCGAGTCTTTTATAAAGCCGCAGTTGTTTGTAAGTTTCATTCATTATTGTTTGTGAACTTACCTAGTTTACATTCTTGTGTAGGTTTACTTTTGATCAAGTACCTGCTATCCCTATGTATAAGCATGGTAAGTATTTTAAATTTTGCGACATCCGTTCTTCATGGGAATTGTTGATAGAGTGATTCCTTCCTACCCAATGCACTTCAACCTAAGAAAGAAGAGGACAAAACAGATACACGGACTATCTCAAGTTGCCAATATAAACTGAAAAATTCCTATGAATGCAGGATTTCTGGCATACTGTTGTTTGATCAAGCAGGTTCCGTATTGGTTGAGGAAGCCTAGACTCAATATTTAGTTATTGCAACCGGTTGTGTTTCTGATGGATGATGCTGGGCATCGTGAAAACGGTAGGCACAAAGCAGATCAATATAAATCTGCTCAAGGACAGGTATTAAAATACATTTATTTATGTTCATGTATAAATTCATCAACAAATTTACTATTCTATTTTGCACAAACAAACAATTGGTAACTGCAATGCGTTCTCTCTGTTAAGATGCTGACTTTGGTAATATTCATGTTGATGTTGCGTTGCAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGGGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGACAATGCAATTGCAACTCTTCAGTATCGAGAAACCTCGATAGGTAGTGGCAGTATGTCATCATGTCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTGCAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAAGCACATGAGTGGAAAAATGGTCAGGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCTGTATGTTCTTGTACCGGTGTCCTGAAGCAGTGTTACAAATGGGGCAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCAAACAAGAGGCATGCTCGTGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTCAGTCGCCTTGCCGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAATAGATGGTGAGAAATTGTTTCTGGAGCAGCATTGCATGATTAGAAACAGCTTTTAGTGATCAATTATGGATTATCGAGTCGAGCGAGGGAAATAATGTTAAGTGTAAAGGTTATCTGGGAAAGCTTAATGGTTACAGTATGCCTGTACCTATATTTAGAATGCGTAATGGTGCTAGATGTTGGCTAAATGAAGGGGTTGAAGACATGACTAAGTAATCAGTCATCCTTACCATTTTTACGCATTTAGTCTCCTGAGATTTTCTGGTGGCACCCATGGCAAGTGTAAAATGTCTACATGGTGGATAAATAGTTGTTAGATAGTCTTGATTAATCCATGTAGCTCTTAAACCCGAATAATTGTAGACTCGTGCCCTCAGTCATCCTGGAAAACCTAATCTGCGTTAGTATGTAAAATCGACTATGTATGTTAATTGTATCCCTGTTTCACGTTTGAATCTTATCTATGACTACGAGTTTAGTTTTT