Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11065 LG2 50930487 50933247 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cell morphogenesis, regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage, positive regulation of programmed cell death, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage, negative regulation of cell division, DNA endoreduplication, DNA endoreduplication, regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage, cell division, regulation of transcription by RNA polymerase II, regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage, glucosinolate metabolic process, glucosinolate metabolic process, regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage, regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage, DNA endoreduplication, positive regulation of programmed cell death, DNA endoreduplication, glucosinolate metabolic process, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   transcription regulator complex, RNA polymerase II transcription regulator complex
Cellular Component   located in   DRM complex, nucleus, nucleolus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein heterodimerization activity, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding
Pathway   B 09143 Cell growth and death   C 04110 Cell cycle [PATH:ko04110]
SNP Position Effect Amino acid change
A/G 50930584 downstream_gene_variant
C/T 50930585 downstream_gene_variant
A/G 50930653 missense_variant p.Leu311Pro
T/A 50930662 missense_variant p.Lys308Met
G/T 50931047 downstream_gene_variant
G/C 50931088 downstream_gene_variant
T/G 50931136 synonymous_variant p.Ile217Ile
G/A 50931280 missense_variant p.His200Tyr
T/A 50931297 missense_variant p.Lys194Met
A/C 50931310 missense_variant p.Phe190Val
A/G 50931767 downstream_gene_variant
T/A 50932296 downstream_gene_variant
G/A 50932476 missense_variant p.Ser128Leu
A/C 50932872 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11065.1
MQPSQRYESSHRSNLEVASHTSKTVYLPPPVQTQSTERGKQNGKSKLSRNTKSGTQRPSADSPNSTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWNSEQCIKRGVGLLESHDDKQNTSESFNFHESQASGIQEITPTDFEMEDDYWFQSDPGVRLTQLWGTNIF*


CDS Sequence:
>Vu_11065.1
ATGCAGCCGAGTCAAAGATATGAAAGTAGTCACAGAAGTAATCTCGAAGTGGCTTCTCACACGAGTAAAACAGTTTATCTTCCCCCTCCAGTTCAAACCCAGTCTACCGAAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCTAGAAACACAAAATCTGGGACTCAAAGACCTAGTGCCGATTCCCCTAATTCAACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAGGGATGGCACCCTTGATCTTAACAAAACTGCTGAGATCCTGGAGGTTCAGAAAAGGAGAATCTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATTAACGGTCTAAAGGCTGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAGAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATAGCAATCAAGGCTCCAAAAGCTAGTTTCATAGAGGTCCCTGATCCTGATGAGGAATCAGTTTTCCGGCAAAGGCAATACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACTGCAAGTATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCGTGGAACAGTGAGCAATGCATAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACGATAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCTGGAATTCAAGAAATAACTCCCACTGATTTTGAAATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGGCTAACACAACTGTGGGGTACCAATATCTTCTAA


Promoter Sequence:
>Vu_11065::LG2:50933247-50935247(-)
TCCTTTTTATGATGTATCAAATGATTCATCGAAATATTTCCAATAATCACATTTGATCATTTTGATTTTTTTAATATTTTTATATAATTATTTGTAATTTTTAACTCAAGTATAATTTTATCATCACATTTGTACAAAGATATTTCATTTACTATAACATAATAATTTATATCATTATCATGAATATTATTTACCATCATCTAACTTAATAAATTAAATTTTAAAAGTAAATTTATGTTAAATTTTAATTATTACTAATTTAATATTATTCTTTGTGCAATATCATTCAAGTGAATTATAGAAAGGATCATATTTCATATTATTCATCTAGGGTGTTGCTACCTCTACCACCACACCTTTCTCTCTCCACCTCCCCAATTTATTTTAATTCCAATTATATCATCAGATTAAAATTTTTTACTTTTATTATTTTTATTTATTTCAAACCTAGTTCTCCTACTTTACTCCTGCACCCAATCTTTCCATCTCTTATTTTCGTTTAATAATTTGTCTTTCGTTTTACTCTGCAACCCAATCTGTCTTCTCCGTTTCACTTCTCCTCCTCCGTTTTTTTCTTCTTCATTTTCCTTACATTATTAAAATACATTAAAAATATATTCAAAAATAATAAATCAAAAATTATTAAAATATTTCCAAAATAAAGAATAAACTAATAAAAGAAACCCTAAAATAAAAAACGTAACTTTTAAACGGATGTTGACATCTGTTGAAGGATTTTGACATCCGTTGAAGGATGTGTCTTAAAGGTTACGTTTTTTATTTTAGGGTTTTATTTGAAGGTTTATTTGAATACACACCTTGAGGAAGCAATACACTGCACCACTCCACACACTGCACTACGAGAGCGACACTGCACCACGAGAGGGAGACTGCTTGATAATTATTTGCACCACTACCAACCTTTGCAACTTGTAAAAGAAAGAGAGGAAGAAATATAATGTTAAAATAAAATAAAAATATTTTACTCATGTACGGGGCACTAGAATAGATTATTAGTGGAATAGGTTGTGAATAGATAAAATTAAAAAATAACCTTAAAAATAAAATTTTAGGGCCAAAATAATAAATGGAAGGTAGAGGGAGAAAAATGTGGTGATAGAGGGATCAACACCCATTCATCTAATACACATAGAGCCCAGGAAAAATAGGGCAGAGAGAGGCCCAAATAAAAGAGAAGGAGAAAAAAGGAAAACAAAAGGCGGGGTAGCGTGTACATTCGAACTCAATTGACCGCTTTTTTTGCGTTAGTGTTGGCGGCCATTCAGTCTCATCTCAATATCTCATCACTCACTCTTCATTCAACAACACATCTCTTCCTTTTTGTTTGTTTCAAAATTCATAATCTCACTTTCACCCTCTTTCATTTCTCCTTACTATATAACAGTGTTGCTGTTACCTCTCTTACTCCCGCTCTCTCTGTTTTCCAAACCCTTTATTTTCTCTGTTAATGTCGACTTCCGGCCAGGATCATCATCAATCCCACGACCCTTCTCATCCATCTCAACTTAAATTCCACCTGCTGCACTCCCCTTCTCACATTTCTCCCCTTCCCCATTCTCTTTTTCCCAATTTCTTCGTGAGTTTCCTATTTTCAATTTCTGTCGGCTTTTCATTTTCTGTTCATGATCGGATGGATAGATCGTGTCCCTGATTCCAACTAACACAATCTCATCATGCAAATTATACACTGTTTTCGTTGTCACACAATGCATTCATTTCAGTTGTAACATCTAACATTCACCTACTCATATGATTTCTTCCTCGGCACACAGTTTAATAAATTGTTTTTGGATTATAAGAGATGAGTCCACGCTTTCAGCGAATTCAGTGTTTTATGTATTTATCAGTGATAAAAATATTGGCTCTCTGTAAGCTTATAATTGAATTTTGTTTTCCTTCCTTTAGATATTAGAAATATACTATGAGCCTCCGCCAAATTGTAGTTTTTGTAAGACTTTAATGTTCACTTTCAACTACAT


Gene Sequence:
>Vu_11065(-)
ATGCAGCCGAGTCAAAGATATGAAAGTAGTCACAGAAGTAATCTCGAAGTGGCTTCTCACACGAGTAAAACAGTTTATCTTCCCCCTCCAGTTCAAACCCAGTCTACCGAAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCTAGAAACACAAAATCTGGGACTCAAAGACCTAGTGCCGGTAACACTCTTTTAGATTATTAGATTATGATTGTGTTAAACTCTTCATTCTGTTGCTTTTATATTATAATTATTATCTTGCTGGAGTTTATGTTGGGTGCATTTTCCTTATCAGATTCCCCTAATTCAACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGTATGTCTATACTCAAGTATTACTCCACTTTCCCTTTTTAACTCAATTGTCAAGCTGACTCTCTTTATAATGCTTATAATATGCCATGGACAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAGGGATGGCACCCTTGATCTTAACAAAACTGCTGAGATCCTGGAGGTATAGAAATGTCTTTCATAGTTTTGTTCACAGAAGGACCTTTTTGTCAGGCTTATTTTGATCTTCTCTTCCAGTTCTTTTAATTTAAAATTTTCTATTTGTGCTATTAGTACATGCACTTCTGCTTCATGGTTTTTTAATTTCTGGTTTTATAATATATCTAAAATTAATTGTGTCAGGTTCAGAAAAGGAGAATCTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAAATCATATACAGTGGAAGTAAATATTATGATTTTGTTTGTTACTTTGAAGTTTCTTTTATCAGATTTCCTATATATATGATACACGTTGTGTTTTACGAGCAGGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATTAACGGTCTAAAGGTTTGGATCTTTTTTAAAGGACTCTGTTCAAATCTCCTGCTTTTAGACTGCTTGCATGGTTGCTTTGAAGTGTAAACATGACTTAATTTTTACATTCGATTATATAATTGAAAAATGAAAACCTACTTTGCCTCTTTTGAAGCCATGGTATGGTATGTTCAAAATATTTCTTCATAATTGTACAGTTAAGAGCAGCATGAAGAGATTGATCAAAATAAAATTCAAGTTGATACCAGCAATTTTCAACTTAAACTGCTTGAGGCATTTTTTCTAGAAGCGAAAAGAAAATTTTCAGGTCACATAAATGCATCTTAAAGGATCACTTGTATGAGTATCTGTGTTATGTAGAAACTCAAGCTTATGCTTGACATGTGTCTGTATGACGTTAGTGTGTCTAACAAATCCATGATAGATACCTTTTAATAAGCTTCTTGGTCGAGGCAAAATCTGAATGTAACATGATTCCATTTCTTATGATACTATTTAAATATAGATAGGGTATAAGCCTCATATTGCGGATCGAATGTATTGGTCTCGCCACTTCTATCCTGAACTAAATATGCCTATGCAGATAATATAGCCAACTTCTGCTCGTGCCTTGGACTGATGTAATTGATCACCAATTTTAGTTTAAAATGCATGTTGCTCTTAGGATTTTAGCTCCACCTGCCAATACTGCTTGTGTTAGTGATTCAGTCCAACTTTGACAATTTGATTCGATACAGGCTGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGTCTGTTTGTTAAAGTGATATCGCGTGAAGTTTCATATGGTTGATCTATTCTTTTAAAACAATTACCATTTTAATTTCTCAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAGAAGTAGGAATTTCTGACAACTTGCCTTGTATTTTAGTTCCAATTTATAGGTTTCTTTACCTGATGGTAAGCTTGCTTGATCATTAGGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGGTCATTTTTTTTTCTATACGCTTAGATTTTATGAAGATATATCTATTTACCATTATGGCCACTTTACTTATTATCTACTATTTTCACAGAATCAAGAAATTATAGCAATCAAGGCTCCAAAAGCTAGTTTCATAGAGGTCCCTGATCCTGATGAGGTGGTATCTACTTTCGACTAACTTGGCTGTTCAAAAAGTTTGGTGTATCACAGAGTTTTAACTGACTCCTCACTCAAATGAGCAGGAATCAGTTTTCCGGCAAAGGCAATACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGGTAAACATTGCATGCAAAAGTTTCTTTATTATTATGTTAAATCTTTGTTTGTTTAAAGGTGATTTTTCCTCTGTATTGAGTCTTCTACTAACTGCTGAACTTTTTAACCCTTGAAGCAAGGACGACTGCAAGTATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCGTGGAACAGTGAGCAATGCATAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACGATAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCTGGAATTCAAGAAATAACTCCCACTGATTTTGAAGTATGTATAACTTAAGCTGTGAGTTGTAAAATATCAAAATCTGGAAAGACATGTCATGTCATTGTGTTTATTGCAGATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGGCTAACACAACTGTGGGGTACCAATATCTTCTAA