Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11140 LG2 51631488 51634299 "PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic "
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   immune system process, cellular response to oxygen-containing compound, regulation of defense response, protein phosphorylation, hormone-mediated signaling pathway, protein phosphorylation, response to wounding, defense response to fungus, hormone-mediated signaling pathway, response to chitin, response to organic cyclic compound, hormone-mediated signaling pathway, response to abscisic acid, response to water deprivation, protein phosphorylation, phosphorylation, cellular response to oxygen-containing compound, defense response to fungus, defense response to fungus, response to water deprivation, defense response to bacterium, phosphorylation, response to abscisic acid, response to water deprivation, hormone-mediated signaling pathway, defense response to bacterium, response to oxidative stress, defense response to bacterium
SNP Position Effect Amino acid change
C/A 51631845 missense_variant p.Gly246Trp
A/G 51631896 missense_variant p.Cys229Arg
A/G 51632006 synonymous_variant p.Pro220Pro
C/G 51632190 intron_variant
A/T 51632199 intron_variant
C/A 51632289 intron_variant
T/A 51632417 missense_variant p.Ser171Cys
C/T 51632784 intron_variant
A/T 51632802 intron_variant
A/T 51633043 intron_variant
G/A 51633156 intron_variant
A/G 51633159 intron_variant
T/C 51633179 intron_variant
A/C 51633239 intron_variant
C/A 51633241 intron_variant
C/A 51633269 intron_variant
A/C 51633361 intron_variant
T/C 51633599 intron_variant
G/A 51633715 intron_variant
C/T 51633851 stop_gained p.Trp69*
C/G 51633856 missense_variant p.Trp67Cys
C/T 51633863 missense_variant p.Arg65Lys
T/A 51633864 stop_gained p.Arg65*
T/A 51633893 missense_variant p.Lys55Met
C/T 51634145 intron_variant
T/C 51634225 splice_region_variant&intron_variant
A/T 51634227 splice_region_variant&intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11140.1
MGNCFGKTDDANNEIRTINKLPPGRSEKKETVEGRKEEDLRKLINYTLDDLKSATRNFRPDTVLGEGGFGRVFKGWIDSNTFKPSRVGVGIPVAVKKSNPDSLQGMQEWMSEVQFLGRLSHPNLVKLIGYCWEDNQFLLVYEYMQKGSLESHLFRKGPEPLSWDIRLKIAIGAARGLAFLHTSEKTDFNAKLSDFGLAKLGPVNGKSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLELLTGRAALDTTLPTDMQNLVQCSMSSLNDRKRLQKIMDPKLDYRYSPRAAFHVAQVIIKCLESDHRKRPCMVDVLATLEKAQSMKYKPKGNKASAIRQTSDVHHPNYPRSSPSPLHYKNNY*


CDS Sequence:
>Vu_11140.1
ATGGGAAACTGTTTTGGAAAGACAGATGATGCTAACAACGAAATTCGAACGATCAATAAACTTCCCCCAGGGAGATCAGAGAAGAAGGAAACGGTGGAAGGAAGAAAGGAGGAGGATTTGAGGAAGCTTATAAATTACACGTTGGATGATTTGAAAAGTGCGACAAGAAACTTCAGACCGGACACGGTCCTAGGAGAAGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAGCAACACGTTCAAACCTTCGAGAGTTGGAGTTGGAATCCCCGTTGCGGTGAAGAAATCTAACCCCGATAGCCTTCAGGGTATGCAAGAATGGATGAGTGAAGTGCAATTTTTGGGGAGGCTCTCTCATCCAAACCTAGTTAAACTAATTGGCTACTGCTGGGAGGATAATCAATTCCTCCTGGTGTACGAATACATGCAAAAGGGAAGTCTTGAAAGCCACCTGTTCAGAAAAGGTCCAGAACCACTTTCATGGGATATAAGGCTGAAGATAGCCATAGGAGCTGCCAGAGGCCTAGCTTTCTTGCACACATCAGAGAAAACTGATTTCAATGCAAAGCTATCAGATTTTGGGCTGGCAAAACTTGGCCCCGTCAATGGTAAATCCCACGTAACCACGCGGATCATGGGCACCTATGGTTACGCTGCACCTGAATACATGGCCACAGGGCACCTGTATGTTAAAAGCGATGTGTACGGATTCGGCGTTGTTCTGCTAGAATTGCTAACGGGCAGAGCAGCTCTGGACACAACCCTACCCACAGATATGCAGAATTTGGTGCAGTGCAGTATGTCATCTCTGAATGACAGAAAGAGACTGCAAAAGATAATGGATCCAAAATTGGACTACCGATATTCACCAAGGGCAGCGTTTCACGTAGCCCAAGTTATCATCAAATGTTTAGAATCTGACCACAGAAAACGACCCTGCATGGTGGATGTTTTGGCAACCTTAGAAAAAGCACAAAGTATGAAGTACAAACCCAAAGGGAACAAAGCCTCCGCAATTCGTCAAACATCAGACGTGCATCACCCGAATTACCCACGTTCTTCACCATCACCGCTTCACTACAAAAACAACTATTAG


Promoter Sequence:
>Vu_11140::LG2:51634299-51636299(-)
ATCTTTTACTCTCTTCTTTATTGAAAAAATATAAAACTTTACACTTTTAAGATCATGTTACCATTATATTCTGTGTCAAATGAATGTAAAAGTGTCATAGTACCGAAGCTAAAACTTTACGTATATTCTTTTAAAAAATTTGCATTGCAGTGTGAAAACGAGAAGACCGTTTTGAAAGTTCTTATAGGAAAAGTTCTTACGTTTCTTTTTCAAAGAGGCCAAAGCTCAACAAAATTAATATACGTTCTGACCTATTTTCAAACTATAACATACTTTAATTCTGTAGGAAAAAAAAACTAATTTATATATTAATTAAACTCGGAATTATTTTGGTACATGTATGTATATAAATAGCGAAGTCAAGTCTTGACTACGTAGTTTAAGAGGTCAAAGGATGTAATTGTTCTCGGTGTTGAGAGGTTCAACGAGACATTATTGTAGATGTCTACTATATTATATAAACAATACCAAGTCTTCAACATACCTGCTGTTTTCTCTTTTATTTTCCTTAACGTTTAGATGAATAAGTCAAACTTGAAAGATATGTTACACGAACTAAAATCTCCAAAATATTTCTTCCCCAAAGGTTTCAAAAACAAAAAATGGTAACCTAGTTTTCTATGTATGCCAAGGTCATGTACGTTAAATATTGTATATATTTGTATATTTAGACTATGTTTAAACCTAATCCAATCTTTAAAAAAATATGTTATTTCCATTTTTATGTTATATATATTGTGAATTGACTTGTTTTTTTATTATAAATTTTAAATTAGTTTACAAAACAATAAAATAAGATTTATATAAAAAGTATTAATACGATAACATATATTTACATTTATTTAATATATATTATAAGGATAAAATAATAAAAACATTTTATAATTTTAAGAAGAAAAAAGAAATAAACAATAAAGAAGTGTATAATATGATCTTTCAGTTAATGTAAAAATCGGACGGTCAATTAACTAATCTATAATTAGGTTAGCACTAATGAGTATATCTCAAAATATATAAATATTGATATTAATGTTGTTGGCTACAGTCATTGCATATTTGTCACTAACAGTATTAAACATTCAGTTACTTTAACATCGAAATATCTTGTGTAAATAACATCCTATTTAACCGAACGATAAGCAGCGTGAAATAGAAGAAAAACCTTGATCCTGAGTTTGAAGTTTAGAGAGATTGCAAGAAATAAACTTAACCTCGATCCCTTAACTAAAACAAGAAAGACAGCGTCAAATATAAAAAATCATCTACGTCAAATTATCATTTTGTTATATAAATTTTGATATATGTTGTGAATCGACATCGAATCTAATCGATATAACAATTGTCGTAAATTTACGATTATGTCTACTGGATGATGAAGAGGAACCAGAAAACATGCAGAGAAATTATGAATGGTTTGTAGATTTTGTCTCAACGGAATATGTTTTGAGCGAGTTCATTCGCTCACTGCATTAGGGATCATCGTGTGAAATGTAACGCCAAGGCTGACTTTGACGGAGTTCCCTACTTGAACTGCAAATTTTCTTATTGGAGGACCATCATGCACCGGTCCCAGATGCTGTTTACCGTGAGGTTTAATTTGGAAAATAGAGACTCAAAATCTCTCGTTTCACAAACCTGAATTTCTGCCAGTTTGCAACAACGATTTCAGGATACACGTGGAAGGAAACAAACAAGCCTTAACTGCGAAGTCAATGTGGGACTAGGGAATCCTTTCCATTATTCAGTAATCATAAACTATTATTTACAAACAAAAAATCAGTACTGGGGAGACACCAACGTTACATACAAAGAAAAAGTCAAGAACCACACTATTCTCCCTTTCAATTCCCCAATTAAATTTCTCTGCCTCAGCCCTTTCTTTTCAACTTCTCCTCACCTTCGTGGAAAGCCTCTTCCTTACTATATCATAACTCCGCAACTTTGTCAACTTCATCTTTCGAACACATAGACTTGTTTCAAACCTCACCACTGTGTCACTC


Gene Sequence:
>Vu_11140(-)
ATGGGAAACTGTTTTGGAAAGACAGATGATGCTAACAACGAAATTCGAACGATCAATAAACTTCCCCCAGGTTCATATGATCATGATCCAATATACACAGTTGTTCAGTTGTGTGTGTTTGTGTGTGTATCCCTCACATGAAATAGACCCTTTCGTTATATTTACTTGCGAGCTATATATATATATATATAAAAGTGTCTGTTTTTACCTTTTATGTTTTCTTAGTATCGTATGTGTTAAACATAGGATTGTTTGTGTGGATTAATGTTATCCCCACATTGGAAATGAAGTTATTAAGTGATTAAATGCAGGGAGATCAGAGAAGAAGGAAACGGTGGAAGGAAGAAAGGAGGAGGATTTGAGGAAGCTTATAAATTACACGTTGGATGATTTGAAAAGTGCGACAAGAAACTTCAGACCGGACACGGTCCTAGGAGAAGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAGCAACACGTTCAAACCTTCGAGAGTTGGAGTTGGAATCCCCGTTGCGGTGAAGAAATCTAACCCCGATAGCCTTCAGGGTATGCAAGAATGGATGGTATGTTCCCTTCCGATTCCTAAAGATTCTTGTCACACTGATTTGATTTCGTTATCTTCAATTGTGCTTTTGTGTTTGTGGGTGCGCGCCAAAAGCATAAAGTCTTTGCTTTTCATGATGGGGTCGATCAGTGATAATTTATGCCTTTTTCAACTTGCTACATGTTCCACTTCATGAATATGCATCTATATTGGATTCTGAGTTGAGCGTATAAAACCAATACATAACCCACCTCAAACTTCGACTATTTCATTTTGGTGACTTCAATTGTGTCTCCACTTTGTTCCAAAACTTCGTATTGGACAAAAATTGCCGTTGTGTGTATGGATAGAGATGATCGAAGAGATTTGAGTAGTCGGCGTGAGATTCAATATTACATTTTTGTTTTTGTGTATAAAATAAGTTCTTAGACAACCATGTAGAGAAAAATTAAGAGACAATCTTGGGGGCAGCTTTCATGTGAACAAAATCTCATACCAAAAGGGTTGATTCCAGAAAAAGTTATGCTTTCCTGATGAGTCGAATTAAATTTGAAATTCCGTTAAAAAAAAGTGTTTGTATTTAGTGTGTTTCTAAATAAAGTTATTGTATGTAAAAGAGAGTATGAGTAAAACAGAAAATTCCCAGACATAGTTAATAACAAGAGATATCTTAAAAAAGTAATAAAGCTTATCCTGAAGTGGTTTGGATTTTAGCTAAATCTATTTAGTGATTTTGGTTCCAAGTAGTCTGCCATTGCAAGAATTGATCCATATGTATATCCAAATGTCGGTGTCAAGGGACCATATATACTAAGGGGGTCAAGTCAACTTTTGTAGGGCTGCAATATTTTACTCATACATGCTACATGCTGATCAATGTTTAATATTTCAGAAAGCATTAATGTTCATTTTTTTTTCTAAAAGAGTACCACTGTAATTCATAACTAATCTCCAATGTACTTCGTATTTGGTAAAAAAAGAATCTATTGTCAATGTTATGAGTATTGTAAAACACTGACAAGACCTTATATATTGATAATATTTGGATGCAGAGTGAAGTGCAATTTTTGGGGAGGCTCTCTCATCCAAACCTAGTTAAACTAATTGGCTACTGCTGGGAGGATAATCAATTCCTCCTGGTGTACGAATACATGCAAAAGGGAAGTCTTGAAAGCCACCTGTTCAGAAGTAAGAATTGTGGACATAGTAAAACTAAAATACAAAGATATTCGTTTGTTCAAATTACCGATGATGATGTTGTTGCAATGTTGCACTCTGCAGAAGGTCCAGAACCACTTTCATGGGATATAAGGCTGAAGATAGCCATAGGAGCTGCCAGAGGCCTAGCTTTCTTGCACACATCAGAGAAAACTGTCATATATAGAGACTTCAAGTCCTCAAACATTTTGCTAGATGGGGTATGTATATATATGTATATATAGATGTATATCTATGTGTGTGCACTGCTAATTCCCTCCTCACTCAATCAATAATCACACACTTTTCCCTCTTTTTGTCACATCAAATTACTTTTTCTTTTTCCTCTTCTACACCAAAGTGTGGTGAGGGGTGAGAAAATTTATCATCCATCATTGACTTAACCTGGTCCCATTGTTGTGTTGCGAATTCATTAGGATTTCAATGCAAAGCTATCAGATTTTGGGCTGGCAAAACTTGGCCCCGTCAATGGTAAATCCCACGTAACCACGCGGATCATGGGCACCTATGGTTACGCTGCACCTGAATACATGGCCACAGGTACCCTCGTCAAATAAAAATTATATATGTCAAAAAAATGATGATTTGTTGATGAGAGAAAACGATTATATGAAAAATTGCAGGGCACCTGTATGTTAAAAGCGATGTGTACGGATTCGGCGTTGTTCTGCTAGAATTGCTAACGGGCAGAGCAGCTCTGGACACAACCCTACCCACAGATATGCAGAATTTGGTGCAGTGCAGTATGTCATCTCTGAATGACAGAAAGAGACTGCAAAAGATAATGGATCCAAAATTGGACTACCGATATTCACCAAGGGCAGCGTTTCACGTAGCCCAAGTTATCATCAAATGTTTAGAATCTGACCACAGAAAACGACCCTGCATGGTGGATGTTTTGGCAACCTTAGAAAAAGCACAAAGTATGAAGTACAAACCCAAAGGGAACAAAGCCTCCGCAATTCGTCAAACATCAGACGTGCATCACCCGAATTACCCACGTTCTTCACCATCACCGCTTCACTACAAAAACAACTATTAG