Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11228 LG2 52286342 52287919 PREDICTED: GATA transcription factor 7-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to light stimulus, positive regulation of transcription, DNA-templated, circadian rhythm, cell differentiation
Cellular Component   located in   nucleus
Molecular Function   enables   zinc ion binding, DNA-binding transcription factor activity, sequence-specific DNA binding
SNP Position Effect Amino acid change
C/T 52286513 5_prime_UTR_variant
T/C 52286650 intron_variant
C/T 52286945 synonymous_variant p.Thr87Thr
T/A 52286987 synonymous_variant p.Val101Val
G/A 52287119 stop_gained p.Trp111*
G/T 52287629 missense_variant p.Lys281Asn
A/G 52287795 3_prime_UTR_variant
T/A 52287889 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11228.1
MEVAVAKALKPSLRREFIVQQTHCEDFFSLNANTVAGGDDFSVDDLFDFSDGSLHYEPQEYVEEKKSLSASSQSKDRGEDDSNSNSTGVSYDSIFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRPEEVNRRVEPEPSAKKTPRFPCETKITTKTRTVRNRKPNARVWSLGPLLSLPSSPSSCSSSSTEPPAKKQKKRAEAQPVGVQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVSGPEAHPQAQMVPTC*


CDS Sequence:
>Vu_11228.1
ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGCGGGAGTTCATCGTCCAGCAAACGCACTGCGAGGATTTTTTTTCCCTCAACGCCAACACCGTTGCCGGAGGCGACGATTTCTCCGTCGACGACCTATTTGACTTTTCAGACGGCTCTCTTCACTACGAACCACAAGAATACGTGGAAGAAAAAAAAAGTTTATCGGCCTCGTCGCAGTCAAAGGACCGTGGAGAAGACGATAGCAACTCTAATTCCACCGGAGTTTCCTACGATTCAATTTTCTCCGCCGAACTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTGTCTCTTTTATACCCGGTTCGTCCGGAGGAAGTGAACCGGCGGGTCGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAACGAAGATAACAACCAAGACAAGAACTGTACGGAATAGAAAACCAAACGCTCGCGTGTGGTCGTTGGGCCCGTTGCTCTCTCTCCCGTCCTCGCCGTCTTCGTGCTCGTCTTCCTCGACGGAGCCGCCCGCGAAGAAACAGAAAAAGCGGGCCGAGGCCCAGCCCGTTGGGGTCCAGGTTCAGCGGCGGTGCAGTCACTGTCAAGTGCAGAAGACACCGCAGTGGAGGACGGGCCCACTGGGCGCAAAAACCCTCTGCAACGCGTGCGGGGTCCGGTACAAATCGGGTCGGCTTTTTTCGGAGTACAGACCGGCCTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAACAGCCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGGGGTTTCTGGGCCGGAGGCCCATCCCCAGGCCCAAATGGTTCCCACCTGCTGA


Promoter Sequence:
>Vu_11228::LG2:52284342-52286342(+)
AACTTGATATCTTGTGAAATATTTAAATTACAACAGTTAGAGTGACTTTGAATGTTACATCTTTTTACTGGGCAATAACATGAGTAATATGTGAGAAAATAATAGCTATAATTTACTATTTTGATGTTTTGGATCTTAAGTGATGGTTTTATTTTATTTTCATATAATCTATTCGTAGTTAATTATAGTTGATTCTCTTCCAAGTTTAAGAACTCAACAAATAATGAGACAAACACATAAAACAATTTAGAACCATTAAATTAACTTGGTTATAAAATTCAAATAATATAAATAAGATGTTGATTTCAAATTTTACAATTGACATATTGTAAGATAATAGTTTTTTATTAATTAACTTAATTGTTGGAATTTTTGGTTTGATGCATATAACGTGCCAAAAATAATCATTGGATAAGTTATGATATCATAAATAAAATTAGTTTACAGTGTATTAAAAAAATAATGGTCACAGGATAGAGCAAAATGTAAAATAGAGTTGAGTTTATAAGATGAAAGAAAGGCTTGAAATAAGAGATCTATAAATTTATATTTATTATAGAAAAGTAAAAAAAAAAATCAACTAATGCACATTAAATAATTAAATGAAAACAACAATAAGATCGGAATCAAGTTCAAATGTGCTACGAGTAAAAGCTAATATTATATTATGTTAAAAATATATAATAATATACTATACAAATTATCACAAGTAAAAGTATATAAATCATTTCCCTACTTTATCATTAATATCCCGCTAACTCATAATGAAAATAAAAACTAAAAATAGAAAATAAATTTAAATAATAGTAATGGAAAAAGTAGTAAACAAACTGTTATATCACAAAAAAAAAAGCACACTAATCTATTGTAATATAAATAATACATAATATGAAATTGAAATAAATAGAATTGAATTTTAACTTATTAAAACAAAATAACGTGGTAAAAAAGTATCAAACACATGGAGATGGCAACGCTGATTAGTTTGCTAATCCATTATCATTAATGTGACATAGTTTAACCATTAAAATGACATTTCCGACATAGAAATTGAGATCATTCAATAGATTAAGTTAATACAATTAAAATTATTTACCTTAAAAGTTTGTAGTAACATTATTTTTTGATAGATGGAGAACGTAAACAATTTCTTACAATAATAGATGAAAAATAAAACTTTATACACTAAATACATTTGTGATTATTATTAAATTTTAGACATTGGGTGTGATGGTGGTATATTTGAAGAGATTAGGATTAAATTGAATTGTAATAATTGGGATAATAATTGAGAAGAAAGCAATATCTGGTTTTGGGATGACAGCTAAGAGGGGATAATTGAGAAAAGAAACGCGCGTTTTGATGGTTGAAGACAGAAAGTAATGGCTCCAAACGTAAAGTTGAGGTATGAATCAAAGCGCCTCATCACACTGTTAAAAGTCAATACGCCATCGAAACCTTCACGCGCCTATCCGACGTGTCTGCATGTCTTTCATTCCACCAATCACACGCCCGCGAACAACAAAGCATGCGATGTGAACTAAGAAAAATAACATGTATTATCCATAGGTTTAAGTAACCGCGCCACGTCACTGCCCGAGATCGACGCGCCCGACCAAACCTATGACTCCCTCTCATTTATTCAAAACGCGCTTCATCGCACCCTTAACGGAACACCCTCAGCCTGCCCTGCGATTGTAACAGTCAAAACCGGCGTTTGATTTTAACGTTTTTGTTTTTATGCGGTTACATTGGACCAGTTTCGGTTTTTTTTAATCCTAGGTTCGGTCAAAAATAAGAATCATCGAGGGCACAACTTTTGAACTTACGGAGCCATCAAAGAACGATCCATTCAAAATTTAAAAAAATAAAAAAATAAATATTAGAAAGAGGAAGGACTAATAATACCGAAGCCCCACCACGTGACCAAATATCACACGCTTGCCACTATCACACCCTCTCCTTCAAACTCTTACAACCAAGATTTGGTACTCTGCATA


Gene Sequence:
>Vu_11228(+)
ATATATTTCTATTTTTTATTATTTATTTATTTATTCAAATTGAACAGAGATCCTGATAAGAGAGAGGACGGAAAGAGAGATAAAGTTAAAGAAATTAAATACCACGAAGAAACTCTCTCTCTTCCTCCTGTCTTGTTTCTCTCTCCTTCAAAGTTCAAACCTTTAAAACTCCTCTGCAGTTTCCCCTCCCTCCCGTTCTTCTTCTTTACAGGTAACTTAAACTCCAATAATTAATCAGCCACCAAATAAAAAAAGTAAACTTTCACGTTCCTTTCCCTTTAACACAGTTCAACTCTCTTTCCCAAAGCTTTAACTGTAAACTCTGGTTCGGTTTGTCGTAGAAATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGCGGGAGTTCATCGTCCAGCAAACGCACTGCGAGGATTTTTTTTCCCTCAACGCCAACACCGTTGCCGGAGGCGACGATTTCTCCGTCGACGACCTATTTGACTTTTCAGACGGCTCTCTTCACTACGAACCACAAGAATACGTGGAAGAAAAAAAAAGTTTATCGGCCTCGTCGCAGTCAAAGGACCGTGGAGAAGACGATAGCAACTCTAATTCCACCGGAGTTTCCTACGATTCAATTTTCTCCGCCGAACTAGCCGTTCCGGTAACTCTCTCTCTCTCTCTGTATGTCTTTTTGTCTGTTTCCTGTTTTCCTAACCCTGCTTTAGTTTTTCTATTGTGTTTTCTGATAATTGAAATTATGTAGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTGTCTCTTTTATACCCGGTTCGTCCGGAGGAAGTGAACCGGCGGGTCGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAACGAAGATAACAACCAAGACAAGAACTGTACGGAATAGAAAACCAAACGCTCGCGTGTGGTCGTTGGGCCCGTTGCTCTCTCTCCCGTCCTCGCCGTCTTCGTGCTCGTCTTCCTCGACGGAGCCGCCCGCGAAGAAACAGAAAAAGCGGGCCGAGGCCCAGCCCGTTGGGGTCCAGGTTCAGCGGCGGTGCAGTCACTGTCAAGTGCAGAAGACACCGCAGTGGAGGACGGGCCCACTGGGCGCAAAAACCCTCTGCAACGCGTGCGGGGTCCGGTACAAATCGGGTCGGCTTTTTTCGGAGTACAGACCGGCCTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAACAGCCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGGGGTTTCTGGGCCGGAGGCCCATCCCCAGGCCCAAATGGTTCCCACCTGCTGATATTCTTAGATTAGGAAGAGTCGTGGCAGATTAGGTATACAGAAACCGGTTTGAACCGGTTTGTTTTTTGTATTATATTTATTTAGCGTTTTTTTAGTTATAGTTAGTAGTAGGGCGTAGTTAGGTGAGGGATATATTAGTATGAGAAATAGAAATTAGGCATTGATTGTTTGTAACGATGTATCCCATTTTCCTTAGCATCTTTTGATTTTATTTATGTTCATTGTGAAGAT