Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11532 LG3 2323333 2326258 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, shade avoidance, photomorphogenesis, regulation of photomorphogenesis, regulation of photomorphogenesis, chloroplast organization, anthocyanin-containing compound biosynthetic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, anthocyanin-containing compound biosynthetic process, regulation of transcription, DNA-templated, chlorophyll biosynthetic process, regulation of transcription, DNA-templated, regulation of photomorphogenesis, shade avoidance, chlorophyll biosynthetic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, photomorphogenesis, chlorophyll biosynthetic process
Cellular Component   is active in   nucleus
Cellular Component   located in   nuclear speck
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, zinc ion binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/A 2323338 stop_gained p.Glu289*
A/G 2323363 synonymous_variant p.Thr280Thr
G/A 2323364 missense_variant p.Thr280Ile
G/A 2323369 synonymous_variant p.Ser278Ser
T/G 2323377 missense_variant p.Lys276Gln
A/C 2323378 missense_variant p.His275Gln
T/G 2323619 intron_variant
G/A 2323639 intron_variant
T/A 2323665 intron_variant
T/G 2323766 intron_variant
G/A 2323857 intron_variant
C/T 2323882 intron_variant
G/T 2323957 intron_variant
A/G 2323973 intron_variant
T/C 2324060 intron_variant
A/T 2324357 intron_variant
G/A 2324366 intron_variant
G/T 2324369 intron_variant
A/T 2324375 intron_variant
T/C 2324415 missense_variant p.Tyr197Cys
A/C 2324606 synonymous_variant p.Ser133Ser
T/C 2324647 missense_variant p.Thr120Ala
A/T 2324669 synonymous_variant p.Gly112Gly
G/A 2324870 intron_variant
A/C 2325088 intron_variant
A/G 2325115 intron_variant
A/G 2325125 intron_variant
A/T 2325136 intron_variant
T/C 2325347 intron_variant
T/G 2325484 intron_variant
G/T 2325655 intron_variant
A/C 2325699 intron_variant
T/C 2325706 intron_variant
T/C 2325737 intron_variant
A/G 2325749 intron_variant
A/G 2325824 intron_variant
G/A 2325914 intron_variant
A/T 2325959 intron_variant
G/A 2325969 intron_variant
C/T 2325992 intron_variant
A/G 2326002 intron_variant
T/C 2326019 intron_variant
C/T 2326023 intron_variant
A/T 2326025 intron_variant
A/G 2326026 intron_variant
C/T 2326030 intron_variant
C/A 2326080 missense_variant p.Cys60Phe
C/T 2326140 missense_variant p.Ser40Asn
C/T 2326157 synonymous_variant p.Ala34Ala
A/G 2326160 synonymous_variant p.His33His
G/A,* 2326189 synonymous_variant p.Leu24Leu
C/T 2326206 missense_variant p.Cys18Tyr
C/A 2326209 missense_variant p.Cys17Phe
C/T 2326228 missense_variant p.Ala11Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11532.1
MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKTDSGEKISDTKSSSISRKVSTEPQNSDYNELLPIEGGGVGGFPPAKESFGGGSTVGNISQWTIDEFIGLNEFSQNYDYMEGSTRADSGKLGDSDSPEEMKEEEEYLEHVPDSSWTVPQIPSPPTASGLHWPKHLQYSSDSLLFVPDISFSHMQHSHKISSTFSRRRRHLE*


CDS Sequence:
>Vu_11532.1
ATGAAGATTCAGTGCAACGTTTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCTCTGTGTTGGGAGTGTGATGAAAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCACTGTTCTGCAGAAAATGTGATTTGGCAATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACCGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGTGCATCCTCATCGTCTTTGAAGACAGATTCTGGGGAGAAAATTTCTGATACAAAGTCGTCTTCTATCTCTAGAAAGGTTTCCACAGAACCTCAGAACTCAGATTACAATGAATTGTTACCTATCGAAGGTGGAGGAGTTGGGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACCGTTGGAAATATCTCACAGTGGACAATAGATGAATTTATTGGCCTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGGATCAACAAGGGCTGACAGTGGTAAGTTAGGGGATTCTGATTCTCCGGAGGAAATGAAGGAGGAGGAGGAGTATTTGGAACATGTTCCAGATTCTTCATGGACAGTTCCACAGATCCCTTCACCACCAACAGCTTCTGGGTTACACTGGCCAAAACACCTTCAGTATTCATCTGATAGTCTTCTGTTTGTTCCAGACATAAGCTTTTCTCACATGCAACACTCTCATAAGATCAGCAGTACTTTTTCTAGACGCCGGAGGCACCTTGAATAA


Promoter Sequence:
>Vu_11532::LG3:2326258-2328258(-)
TAACTGAATTTCGAGTTTAGATGAATAAATTTGTTTGTTCTTTTGATTCTTGTTGTGATTTATTTTTATTTATGTATTTTGCTTCTTAATCAAGTAAAAATAATAATTTTTACATTATAGCAATTTAGCATGGTGTCAAATCTACATAACATATCAATCATATGAGTCCAATGACTTTTATATTTAATTAAGAATTTACTTTGACTAAAGTTAGAAACTTTTATACGATTGAATGAGTTTTTACAAATAATTGAGAATGTACTTTGATTAGTGATAAAAATTTTAATAAAAATTAATTAAAAATACTGACAAAAATAAGGAACATCAACAACGTTCAACGAAATAAACATCCACCAATAAGTAGATGAGCTAAAATCCAAAATTTCGCATATGAAAACTAAAATAATTTCTGTATTCTTAAATTTTAGGTTGATTTTTGAACGTTTAATATTTATCTTTGATTATCACATCAAAATCCGAGTTATACGTTTAGAAAAAAAAACATAGTTTCGTTAACAAAGTCTAGATTAAGCCAATCATACAGACATTGAACCAAAATAATAACCACTTATTTATCTAGTTTTCCCTATTACAAAGATAATAACCACATATAAGATCTTTCTTTTTGTTAATAAAATTTAAACTAAATATAAAGTAAATTTAGGTTTAATTTCTGTATTCATAAATTTTAGATTGATTTTTAAACGTTTAATATTTATTTTTTATTATAACATCAGAGTCCGAATAACTAAGATAATAAAAGGGATAAGATAAGATATGTTTAGAACAAACAAACGTGATTTTATTAACAAAACCCAATTTAAATCAATCATACAGACATTTTAAGGTCAATTTCTTAACGTGAACAGGTAACTAAATAGAAAATAACATCATTACAATGGCTAAAGGATTTTTTATGTATTTAACCCCGTCTTTTTTCTTGCCTTTCTATTCAACTTCTCTATTATAATAATCTTAGTATAAGATAAGTAATGATAAAAATACGTGATAATGGCTCTCAACTCTTCAAGAAGCATTAGATTAAATTATCTTCTTTTTGTGGTACAAAATAAGTTTAACTCCATTTAACTATTAAAACATTGAATTTTCACTATCAATGTAGCAAAATATCCTACTTTTGCCTCAACCAACTCCACCCATTAAGATCCAAGTTTTGAACTCCAATTTCTTTCCCTCCCTTTCGCCTAAAACCATGGTGTATCTCTTCTTATGCTACAAAATATCCACTCATGTCAGAGCTAATTTCCACCCTTTTCTTCCCTTTTGCCACAACAATGGGGCCTCTCTTCACGCTCTGCAAACTCCTCAAAACTCCATTCCCTTTTCTTAGGGTACAACGGGACATGACACAACCCTTTACTCTCTCATTTTGTTCACATAAATCAAAGCATTTCTCATAATTAGTGGATGTGTATACTCCACCGGTTAGCAGAAATATAAAGCTCAAAAGTCCCCAACCGAAAAAATGAAAAAAATATCCAAAACTATAGTTACTATCCAAAAATTTTCAGCCAAAATTTTTCCAAAGTGTTGCACTCAAAAATAAAAAAATCCTAGATTTTGTTCTTTTTAAGATTTTGATTTCTTACTGTAACATTACCGAAGCCAGCACAGTTGGTCTCCTCTTCCACGACACTGCCAGTTTGCTGCCACGTGTACATGAACATCGTGGCCGCAAAAAATATCCTCGTTTTTTCTCCTTTCTTTCTCTTCTAATCTCCCCACTTCTTAAACCCTGTTCCTCTGCTTCTTGGTGTCCCAAACCTCTTCTTCTGTTTATTTTTTCTTTCTCAATTTCAAGTGGGGCTATCTTAATTTGTTGAAGTTTAACTTTTTTAACTCTGGTTTTACCTTAATTTTATTATTGTCTGAAGAATAGAGGGTGGAGTTTGATACCCTTTTGGGGAGTGAGTGTTTTCTGAGGGAAAGATAAAGACTTTTGGTGTGGGGGAGGGGAAACTTGAATTGGGGTAGACAGG


Gene Sequence:
>Vu_11532(-)
ATGAAGATTCAGTGCAACGTTTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCTCTGTGTTGGGAGTGTGATGAAAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGTGTGTTGCTTTTGTGGTTTTTATTTTGTTTTAGTTTGGTAGAAGGGGGTTGGGGGATTTCTGTTCTTTGGAATCAGTTTCTTGTGCTTAATACTTGGGAGAGGTTCTGGGTTTGATCAAATGACTGTCTCTGATTCTGTTTGAGGTTTATGTGGGGATTGCAATTGCTGTTTCTGCTGATTTTCGACTCAGTATATGAGATGCTAATTATGCTTGTTCTCTATCCTTGATGGAATTACAAACAAATATCGTCTACCGTGATAAGGGTTTTAAGGTTGAGGTTTAGTGAAAAATCTATTCTTCCAGGTTTTGTTAATGCTTTTTTTTTTTTTCTTTCAAATTTGATTAAATTGAATATAACTGATTTCCATTGACGTTCAGTCTGGTTGTTTGGTTAGGATGAAGAAAAATAGAAGTTATCATATCTTATTAAGTATATTGTTTGTTGAGTTGCTGGAATAGGATAAGCTTAACTTGTTTGCTTATCATATCTTGTTTACTAGTTCAAAAGTATCTTGTTTGTGACTACTTTTATTACCACTATGATCACAACCACCACTATTTTCGTTACCACCATCATCCTTGCTGCCAACATGTAGGCCATTGCAATAGTTTTCACTACTATCACCACCGCTACAACAACCACCATAACCACCACCGCGATTACCACTACAACGTTGAACACTATTCACCATTTGTGCATTACTGAGACCACAATCAGTTTTGTCATTGTCGCCATCAAGACCATCACCATTGTCATTGTTGTGTTTGCCTCATCATTACCATTACTGTCGTTGTCAGTGGCCCCACTGGTACCAACACCGACCCCGTCACTACCATTACCTTTTGTAATGATATTTTTCATTTACATTCAATTTATGCTGCTATTTTCTAGTTATCTAGTGTGCATCCAACACATGATAGGATGATAGCTTATCATGATCATGTCCTTTTCTACTGTATCCTGTTCTCTTATTTACTCATTTTTAGCCTACTTTGACCACCAAATGAGCCATAATTTCATTTGTGAACATTCACAAGAATAAGTTCTTTTAATTGACACTTTTGAGGATTTATATTAAATTATGATTTTATTCTTATTGAAAAAAAGTATGTGTTACTGAAACCATCGTCAGTCAACATTTAATCATATCCTTATTTTGTTGTTTTGTCTTGGTTCAGTTTAAATGAATTAAAACTGGTTGCTGTTTTAGATTAGCTTGTGATGATGGTAGAGTCTGCTACCCTTTACAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCACTGTTCTGCAGAAAATGTGATTTGGCAATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACCGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGTGCATCCTCATCGTCTTTGAAGACAGATTCTGGGGAGAAAATTTCTGATACAAAGTCGTCTTCTATCTCTAGAAAGGTTTCCACAGAACCTCAGAACTCAGATTACAATGAATTGTTACCTATCGAAGGTGGAGGAGTTGGGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACCGTTGGAAATATCTCACAGTGGACAATAGATGAATTTATTGGCCTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGGATCAACAAGGGTATGTTTGGCATAACCTTGTATTCCCTGCTCATTGGTTTTGTAGAGTTTCCATCTTTAAAGGTTTGATTTTTTTTACTAGGTTAAGCATTCCAGAGCTTAGATTCATCTTTGGTCATAGATAAATTATGTGTGGTAGTGCCTTTAACATGTGCTGGGGAAAATAGAACAGGGATGGGGCCAATCATGTCTGCCAAAGGTATATGCCCTATTAACATGTTGGTCACATCACCAAACAACTGGAAAATATAGTATAGCTTTTGTAAATATGTTGCATATTTGTGGTCAGAAAAGGTTACATTCAATAGACTTCAAGCATTGGAATCTGACAGATTGATTGATTGAAGTGCATTTCGGTTTCTTTCTCTCCCATATTTGTAGATCCATTTTAACATTTGAAATATTGACCTTTCAGAAGTGCAATACACAGTTGGCTTTCCCTTGAAACACAATTCCTAAAGATTAATAAAAATCAACATCTTAAAGGTTACAAAGAGCTATTACCATGACACTAGTGGTGATCAATTAACAAAAAACACCATTGAGTACTTAAAAACATGATATTTTTTTACCTTGTGACTATTCTCATTCAATTGATTATGTTCACATTCCTTGAGACTGAGTGTTTACAATGTACTGATAATTAGGCAAAATACCTTCGGTATACATCATGTGTTTTTTCCTAACTTTCATCAACTTTTTCCATTTAGGTTGCACTTTGATTATGTTATAGTCTTATCTCTATGGTTGATGGTTGCGTAATTTTCTTTTTCACCTATTCCTTTCTTGATGAGTATGTGCAGGCTGACAGTGGTAAGTTAGGGGATTCTGATTCTCCGGAGGAAATGAAGGAGGAGGAGGAGTATTTGGAACATGTTCCAGATTCTTCATGGACAGTTCCACAGATCCCTTCACCACCAACAGCTTCTGGGTTACACTGGCCAAAACACCTTCAGTATTCATCTGATAGTCTTCTGTTTGTTCCAGACATAAGCTTTTCTCACATGCAACACTCTCATAAGATCAGCAGTACTTTTTCTAGACGCCGGAGGCACCTTGAATAA