Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11688 LG3 4282985 4285715 PREDICTED: nuclear transcription factor Y subunit C-2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   CCAAT-binding factor complex, nucleus
Cellular Component   located in   nucleus, cytoplasm, nucleus, cytoplasm, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, DNA-binding transcription activator activity, RNA polymerase II-specific, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein heterodimerization activity
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
A/C 4283015 3_prime_UTR_variant
A/G 4283333 synonymous_variant p.Pro219Pro
G/T 4283396 synonymous_variant p.Ala198Ala
A/T 4283480 synonymous_variant p.Ile170Ile
G/C 4283621 synonymous_variant p.Val123Val
T/C 4283628 missense_variant p.Glu121Gly
C/A 4283975 missense_variant p.Glu5Asp
T/C 4283986 missense_variant p.Asn2Asp
C/A 4284273 intron_variant
A/T 4284276 intron_variant
T/G 4284285 intron_variant
G/A 4284393 intron_variant
A/T 4284489 intron_variant
T/C 4284703 intron_variant
G/T 4284946 intron_variant
T/G 4285337 intron_variant
T/A 4285360 intron_variant
C/T 4285361 intron_variant
G/A 4285512 intron_variant
A/G 4285514 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11688.1
MNKSEGTRQRQQQQQQQHVMGVAAGANQMTYSHYQTAPVVAAGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQLQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKASIPLVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAALYPTQQPRPTMAFMPWPHTQPQPQQPPQQQQTDS*


CDS Sequence:
>Vu_11688.1
ATGAATAAATCAGAGGGGACTCGGCAGCGGCAACAGCAACAACAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAACCAAATGACCTATTCTCACTACCAGACTGCTCCCGTAGTGGCTGCTGGCACACCTGCTGTAGCTGTTCCTTCCCCAACACAGGCTCCTGCTGCCTTCTCTAGTTCTGCACACCAGCTTGCTTACCAGCAAGCTCAACATTTCCACCATCAACAACTGCAGCACCAACAGCAGCAGCTGCAAATGTTCTGGTCTAATCAAATGCAAGAAATCGAGCAAACCATTGACTTTAAAAATCACAGTCTTCCTCTTGCTCGAATTAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGACGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCCTCTATTCCATTAGTGGGTTCTCCTGCTGATATGCCCTATTACTATGTACCTCCACAGCACCCTGTGGGACCTCCTGGGATGATAATGGGAAAGCCAGTTGATCAAGCAGCGCTATATCCTACACAGCAGCCTCGACCTACCATGGCTTTCATGCCATGGCCCCATACACAACCTCAGCCACAGCAACCACCCCAACAACAACAAACAGATTCATGA


Promoter Sequence:
>Vu_11688::LG3:4285715-4287715(-)
TTTGCACCCCTTAATTGAAATTCACACCTCCTCAATCATTTTAACTTAAATTATAATTGATGTGGCATTTTCTTTTCACCTCCAAATGTCCCAAATATTATCCAACAATTTCCCTACAATTAATAATGCAAATAATTAGTCTCAGATAATTCAAATTAATTAAAATAAGAATTTCTGATCAAATTAAGCACAATTAGGAAAAATGGGAAAATACTGGACATTCTAGCTCAATTCCCTGATTAAATCTAGCACAATAAGCTAAGTGAAATCAAAAAAATATTGACTCATCAATAAATAGAAGGCAAGAAGAAAGACGAAGAAGATGATGAAGGGGAGAGAAAATATGAAGAGATGAAGATATTTCATCTTCCGTTGAGCAAGGAAATCTCTTTAAGCTATTAAAGCTAAATTTCTCAAATCAAGGAAAGTGAAAAAGAGAAGAGCTCAAGAAAAGAAGAATAATCTCAAGCTTCATCAGAACATCCACTTGAAGGAAGAAGAGAGAGTGAAAAAGTGAAACACATAAAAATATCTCTCAAGCCTCATTGAAATATCGATCTACTTGTATTTGTAACAAGAGAGAAGAGAGAAGAAAAATAAAGTATAACATCCCTATAGTGCTTCATTATATCATTTGCTTACTTGTGTAAGGTGAGAGAAAAAGAGTGATGAGAGAAACACCTACGAGTGTTTAGACTGTTTTGTATTGTAATCATATCCTCTATGCGAGAGTAATAGTCTGAACGACTTGTTACCGTTGATGGGATATATAATTGATGCTTATATTTCTTCGTATGTGGACTTCATAAAGCAACAAGGAATGAACTATTCTCCATCTATATTGAGAAAATTCATTGCACAAATCAAGTCAGCAAACGCAACACTCAAGCCTACCTAGACAATAATATAAGTTAAAGCCTGCAAACATGACCCCTAAGTCTACTTAGACATAGGACAAGCCTACAAACACAGAACCTAAGCCTACCTAGACAATAACACAAGCTAAAGACTGCAAATGCAACACCTAAACCTATCTAAGGCAGTAGCATAAAGTTAAACCCGACCAACTACAACCTAACCAAACAGTCAATCCACCTACAAAACATAAAGTTGATTACAACTCAACCAAATGGTCAATTACTGTCAAAATAAGTTCACTCTACCTGTCAATCAAACTTTCAAGCTTGAAAGAACTTGTATAGTTATCCAAAACAACAAATATACTAAAGAGTTTAATCTAATGAAGCTTATTAGCCTAAAATAACTAAATAATATTAACAAAAATATTTATTGACGTAGTATTTGTATATTAACATAATATATTGTCAAATCTCGATAATTTAATTATATCATAAATATTCTTTTATATATATCAATATAACGTGGTCAATTTGGTTAAATAATATATTATTGTTATTATCGTACTAATTTATTAGTAAGATTTTATCATATTTTATTTTGTAATAGATTTTATAAAACCCTATAAATATATGTGAAATTTTTGTAAGAAGCATAAATGCATTCTCGTAGTAGATACTATACACATAGAATATAAAATTTTCTTCGACCATCATACAGTTTTTTCCACAAGATGGACGCTCTAAATCTCAGTAAAACCAATTATATTTTTTAATGAGACATTTTATAAAATTTCATTTTAGCAAAGATTTTTTTTAATATTCACCAAATGGATAATAATAAACAAAAGGGTAAAAAGTTCTCTCCCACTTATTCGCAATTCCCACAATGGCGCGTGCCTGAAATTCCATAACACGCTTTACTTTTTCTGGTATTTCGAAACCACCCCTTACGCGCATGCGCTGTCGACACCAAGAAACGTCGCAGTCGTTCTCAAAAATAGTGTGACGGCCACTAATTTTACACCACATGTCTCTGAATACTCCCCTTCGAATGTCAGAACTTTCAACACTCGCCACGTGTCGATACCAGATAGATCCTCCTAGAAGCGCACTTTCTTTCTCTCTCTCTAGAACCTCCAC


Gene Sequence:
>Vu_11688(-)
ACACAAACTTTGATTTCAAACGCACACACACTCTTCAACTTCACTGTCTACCTCCTTATATTGAAACCAAACCCCACTCTTCTCTCTTTACCCTTACTTTCTCTCGCCTAGGGTTTTCTCCACCATTGACCCCACACTCCAACGCATAGCCTCGCCCAATTTTTATGGGTAAATTTCTCCCTTGATTCTCCTTGTTTGTTTTTCGTGATCCGCGGAGAAAGTGAAAATGAAGTTTTTTTTTTATCATTTCTGTTTGTTATTAAGTGTTAATTTTGTATCTCGGGCGTTTCAAATTCTTGTTTTGGTTATCTAAGTTCGTTTGGATCGTTATGGAGCTGAGTTTAACATTGTTGTGACTTTGATAGTCTTGTTTGAAAAAAAAAGTTCTAGAGGAGTTTATTTATTTTCATTTATAGAAGTGCATGAATTTCTGGGTCTCAACTTTGTTGGGAATGAACGATTATTGCGATTACATTCTATGCATGCATTAGAGGGTTAACTGTTTTGCATGAATTTTGTGAGACGCGAAGTTTTGTGTTTTACTGTGGACGGGTGGAAGTGAGGAAACTTGTTTGATTTCAATTTTGGATTGATTATAGCAATTTGTTTTGAGAATCAGCAATGAAAGGGTCTAAAATACTGTGGGGAGGTAAAGAATTAGCTATCTTTCTGAAATTTTGATGGTTCTGCAACAGAGCAGGCTTTTACATCCTGCTTTTCGTTTCGCTTTTGGTGTGAAATGTAAAGCACCATAACGGGTATTTCTGATCCTGCATGCATAATGATTCTAGCTCTCGTATACTAATGGAGTTTTCTTTGTCTTTACTTTTCATGATTAAAAATTATGAATTAAAAACACAATAATGACCTCTTATCTCTTCGGTCTTCTTTGAAGTGTTCAACTTATGTTACTGTTGTTTTTGGACTTGGATTCTGAATGCAATTTGCACTCTGCAGTTTTAATTTTGGTTTGCTCTTTTATGGGTCCATCAATGTTAGTTTGTTGATTGATAACAAATGGTGTAGGCATTTATTATTAATATGTCTTCTAAGGTTGAACACTTGGATCTTTTCATGACTAATTTTGATCACCCATTTTTCTTTTGTGCGTTATGACTGCCAAAATTTTGATCCTTTGTATGCCTTGCCAGATGTTAAAGATATAGCATAATTTTGGCCTTAGATTCATCTTACCTGCTAAGTGACGGGAAGCTGTAGGTAGGCTATTTATTTGTATTATTGACGTTGTTTCATAAGTTATGTTTTAACCAAGTACCCATGCTCTTCATGTAAATGCTTACAAACCTGATGATAGAGGTAAACTTGTTCATTATGATATGCCTTTATGTTGGTCTCCATATTTTTAGACTTAACACCTGTCCTACTACAATTTAGTGTTTGAAAGATTGGTCTTTTATTAACCGTCATTAATCAATGATTTAGATAAAAAAAAATTCTGACTTTGTGCTGCGCTTCTGTTTTCAGTTAATGTGATACGGTGTTGTGTAACTTTGTAAGTAGGAAAATATTGAATCAATAAGGATTTGATCTTAGAGACTATTTTCTGTATTCTTATATAATATACTGTTTGAATGACTTTTTTTGACCTCTATAAAACCTGTATCCTTGCAATTTAATATCATATGATGAGGTTTTCTGTTTTATTTTTATTATAGAACTATAGAGAGGACAGTTTGAAGGTAAAATCTTAAAGCAGCAAATCATCATGAATAAATCAGAGGGGACTCGGCAGCGGCAACAGCAACAACAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAACCAAATGACCTATTCTCACTACCAGACTGCTCCCGTAGTGGCTGCTGGCACACCTGCTGTAGCTGTTCCTTCCCCAACACAGGCTCCTGCTGCCTTCTCTAGTTCTGCACACCAGCTTGCTTACCAGCAAGCTCAACATTTCCACCATCAACAACTGCAGCACCAACAGCAGCAGCTGCAAATGTTCTGGTCTAATCAAATGCAAGAAATCGAGCAAACCATTGACTTTAAAAATCACAGTCTTCCTCTTGCTCGAATTAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGACGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCCTCTATTCCATTAGTGGGTTCTCCTGCTGATATGCCCTATTACTATGTACCTCCACAGCACCCTGTGGGACCTCCTGGGATGATAATGGGAAAGCCAGTTGATCAAGCAGCGCTATATCCTACACAGCAGCCTCGACCTACCATGGCTTTCATGCCATGGCCCCATACACAACCTCAGCCACAGCAACCACCCCAACAACAACAAACAGATTCATGATGATTATGTGCATTCAATTAGGTTTGGGAAGTAGCATGCATCTTTTGATTACAAATTTACTTGATGCCTTTCGGCAGTAGTTTAGGGTTATGTATTGAAGAAAGCCACAGATTGTTTGAGGAATTTTGCACTCATTTGTGATTGTATGAACTCTCTTAAAGATTTGTGTGATAGTTGATTTAGTTTGCAGCTGTC