Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_11713	LG3	4646968	4648951	myb family transcription factor APL isoform X4	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, phloem development, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, xylem development
Cellular Component	located in	nucleus, mitochondrion
Molecular Function	enables	protein binding, protein binding, DNA-binding transcription factor activity, protein binding

SNP	Position	Effect	Amino acid change
A/T	4647469	synonymous_variant	p.Leu200Leu
A/G	4647628	synonymous_variant	p.Ile147Ile
A/C	4647728	intron_variant
T/G	4647804	intron_variant
A/T	4647806	intron_variant
G/A	4647821	intron_variant
A/G	4648012	intron_variant
A/G	4648398	intron_variant
G/T	4648412	intron_variant
A/T	4648419	intron_variant
G/T	4648438	intron_variant
G/A	4648590	missense_variant&splice_region_variant	p.His61Tyr
A/T	4648602	intron_variant
A/C	4648613	intron_variant
G/T	4648682	intron_variant
A/C	4648685	intron_variant
A/T	4648686	intron_variant
A/C	4648711	intron_variant
A/C	4648714	intron_variant
G/A	4648741	intron_variant
G/T	4648746	intron_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_11713.1

MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAASNLKGGIVPPQSIPDMGVLKEFGSPLAFSSFQDLENIYGGDQIELQHNMEKPPLDHGFMSMNENLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG*

CDS Sequence:
>Vu_11713.1

Promoter Sequence:
>Vu_11713::LG3:4648951-4650951(-)

GGACATTTATTTTGTAAATTATGTCTTATAAATTTGAGTTTCGATCTAAGTAAATTCTTGTGGCTGTAAATTTCAAATCGACATTTAAATTTTACTTATATATTAGATTTATAAAACTAAGAGTTAGATTTATAAACAACATGTAGATAAATAATTAAATTTAAGAAATTCGAAATTGCGACACAATATAATATTTCTTACATTTTCTTATTTCTATGTTTGATGCACACGAAAAACAAAATTGCAAATCAATTTATTGTACAATAAATATAAAGTTTCTTGAGTTAGGTAAGAATAATTCAAACGATGTTAGGCTGATTAACATGAATTTTAAATTTTGAATCACGTACGGTGTACAAAAGCGAAAAGTTAAAATAGTTTTTACTGTCTTTGCATTTTCATTCTTTTTCTTTCTTTACTTTTATAAGGAATTCCATTAGCTAGCATAGAAGAGTACCTGTCAAACAAAATAGTTTACGAATCCTTTCCAAATATTAACGACAGAATGAGTAATCGTGGCTTCAATTCTGAGCATCTTCATCCACGATCCGATCTTAAGCTTTTAGAATCAATTTAAAAATTCACATAAAAAAGAAACGAATGTCTTCAATGGAAGTGGGTAGTAAAGGTTAGATTATTATTATTAATAAACAAATATATTATACATTCTTTTTTAAGTATTATTCATTACTATATAGGATATGTCTCACCAAATTTTTCCAAAAACTTTTCCAAACAAAAATGAAATAAACATTTCATTTAGCAGTTTCAACACAATCAATATTTGGTGTGCAGTAATACAATTCCATGACCTTTCACACTATCCTAATTATGCTGGATGTATATTACAATTTAGATGGTTTTATTAGTTTTAGGCTTAGTATTTTTTTTTTCCAATATTTGAAAGATTTATTCAATGTGATTCTTTAATATATTTTTTTTCTTGTTTTTCTATCTCAATTTAGTCTCCATTTTATTTAAAAAAAGTTAATGTGATCTTTTATGTTAAATTGTTGTTAACATATAGTTTAAAAATAATTGCATGTCCATGATTCTAAGCTTATCAAATGCATTATGTGTTTATAATATTAAATAAACTCCTCCAATATTGAAATAAAAAAAATCTATTAAAGCTTATTTTTTAATTGCAAGATTAATGAGAAAACATGATGTTAATTAGATTTTTAGATAAAGAGTTGTTTATGAGGTAACTGATCCCGGTGAACCTTATTCCAATGTGCTTACTACGAAGATGAAACCTAAAATAGAGAAAATTCTGTGAAATATATGATTGAGAACTTTTCCTTGGTAATGACATAAAGCCAATGCTTTCTATTATTACCAATGTAGCTGATAGGCCATAGATGGGTTCGTACTAATTATTATGCTAAAAAGGGTGTCGTACCACGAAATGCCCCATGCATACATAAACAGCCAAATGTGAGATTATGTGCATAATAATGCATGGAAGAAAAAACATAGTTGAATTCATAGAGTATAAGAGATAGTGGACCAAAATTTCAGTTCATAATATTGTCCATCATTATCATTGCATGATCAAGGTCTCTCTCTCTCTCTCTCCCTCATGATGTCCCCAAAAGCTCTCTATCCATGCATACACATAATTTAATAAAGGGTATCTCTCTTTGGAATGTAATAAACTATGTGTGCTCAAAATATAGTAACGAAGGTTGGAGAATGTTAAAGAGAGAGGGAGTGAGGTGTCTTTTGACAAAGGAAGGTGTGCATGTTGGAATTATAGGGTAGCTTTATCATATTTTATAAAGAAATTTCACATATTGAATACATATTCTTTTAAGTAATGCTAGCTCCTTCCATTGTGCTTTATACCTGGGGAGGTAACCAAAGCCGTTCACACCCTTCTCTCTTCTTCAAAACGCACCCTATTCTCCCCTATTTTGCATCGCATTTGTTCTTGAATCTCTTCAGTATTCCTTCTCAGAGCCTCTCATCACACAGAGAGAGAGAGAAAGTGAGAG

Gene Sequence:

>Vu_11713(-)

ATGGAGAGAATGTTCCCTCCAAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGTTTTGTCGATGCTGTTACTCAGCTTGGAGGCCCTGATAGTACTCTTCTCTCCCTTTCTCATCACACCTTCCCTCTCAAACATCTTTCTTTTCCTTCTTTCTTTAATACAACTTTGGTTTCTTATATTATCATATATCAACATCTATGTTTCGATGATGATAATATGATCTCAATCATAATTTCAGTAATCATCCTTTTTTGTGTTTTTATTTTGCAGAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGGTTTGATCAATACAAAACCATATTTCGTGCTTTTGATTTTGCTTTATGTTTTGGAACGCTTTTACGAGACTGCCAATGTCTCGTGCTGGCTCCATGTTTCTCTTTCTTTTTTCGTTTTTTCTTTATCTTTAATTTTTTTTTTTCGTTTGTTGTCTGCATTTAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGGTGACTCTTCTTTCTAGGGTTCCTCAATGTTTTTTGGGTCTGAACTTTTCTGATCTTTACACTTCATGATAGTTCTTTTTATATTGACTAGATCTTTTTGCACTGACATGCAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGTATGCCTCACTTCTTTCATCTAAATCTGTTGACTCAACTTGCATGCAAAAAGATTTTTGAACAAAATAATTTTCCAACTTCTATCGCCTGAGTCTTTTTCTCTTGATTCTTTGCTGGGTCGTGGGGGGATTCGGGTTTTCTTGTGGAATGTGTGTGTGAACACTGTATGAAACAGTAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTAACTATAACTCTATTATACCCTTGCAGAATGCTTAAATCAGTGCATATTTGGTTCAACTTGTTCTGAGGAAATAATGGTTTACTTTTACTTACAAGTATTTTTGAAAGTAAATCATCATTCCCTCTAAACATGCACTGATTGGGTCTCCAAATCTGTATTATATATATATGTCTGTACATGGATTTAGGTGTATCTATCTGGCAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCATCTGCGGCCAGTAACTTAAAGGGTGGTATCGTACCTCCTCAAAGCATTCCTGACATGGGGGTGTTGAAGGAGTTTGGTTCCCCTCTTGCTTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGTGGTGACCAAATTGAGCTTCAGCACAACATGGAGAAGCCACCCCTTGATCATGGATTTATGTCGATGAATGAGAATTTGTGTTTGGGGAAGAAGAGGTCGAATCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTGCAAGACCTGGGAGGACCAGCCTCATCTTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGGGACCATATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACCGACATTGATCCTATGTCAGACATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTTGTTGGGGAGAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCTCCTCTTCAAGCTGAAAGGATGAGTCCAATGATCAGCACCGGTACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA