Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11760 LG3 5437125 5439725 PREDICTED: serine/threonine-protein kinase RHS3-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   pollen tube growth, protein phosphorylation, unidimensional cell growth, pollen tube growth, pollen tube growth, pollen tube growth, protein phosphorylation, protein phosphorylation, pollen tube growth, unidimensional cell growth, pollen tube growth, pollen tube growth, unidimensional cell growth
Cellular Component   is active in   nucleus, cytoplasm, plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, kinase activity
SNP Position Effect Amino acid change
T/C 5437257 missense_variant p.Gln522Arg
T/A 5437260 missense_variant p.Tyr521Phe
A/T 5437437 stop_gained p.Leu462*
C/A,T 5437563 missense_variant p.Arg420Met
T/C 5437574 synonymous_variant p.Leu416Leu
A/T 5437575 stop_gained p.Leu416*
C/T 5437578 missense_variant p.Arg415Lys
A/T 5437587 stop_gained p.Leu412*
G/T 5437629 missense_variant p.Pro398Gln
C/G 5437725 missense_variant p.Arg366Pro
T/A 5438138 downstream_gene_variant
A/G 5438145 downstream_gene_variant
A/T 5438231 downstream_gene_variant
A/T 5438244 downstream_gene_variant
A/T 5438291 downstream_gene_variant
C/T 5438324 downstream_gene_variant
T/C 5438367 downstream_gene_variant
T/A 5438550 missense_variant p.Glu221Val
T/G 5439240 downstream_gene_variant
T/C 5439301 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11760.1
MPDLPPEMRHNVSEEAHPSVHSSCAKSGKNSPSHPNNVNQAEKETFRAANVHTSGRETGQLDQVSKSDNAKWEGKSRPQRLIPPNRNISDFSPQQHQSPSTTKKPGQNPDHHHSKTVSVSTPHGKTSHHGSTGSRSNSLESTSAPIRPHTGGDVRWEAINMISKCGPLNLSHFRLLKRIGYGDIGSVYLVDLKGTKTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKFYCLVMEFCSGGDLHTLRQKQPNKCFSEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHASNNSGGNSDSSGVLSDDQASTTQASSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGSTPFKGAGYKATLFNVVGQPLRFPETPQVSSVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPDTIDFTKYASKDTPPPVDKKMADIANDKHNHNASDSYVDFEYF*


CDS Sequence:
>Vu_11760.1
ATGCCTGATTTACCACCTGAGATGAGACACAATGTGTCAGAAGAGGCACACCCTAGTGTTCATAGCAGTTGTGCAAAGTCAGGAAAGAACTCACCAAGTCATCCCAATAATGTGAACCAAGCAGAAAAAGAGACCTTCAGAGCAGCAAATGTCCACACTTCAGGAAGGGAAACTGGACAATTGGACCAAGTTTCAAAATCTGATAATGCAAAGTGGGAAGGTAAATCAAGACCCCAGAGGCTAATTCCACCAAACAGGAATATCTCTGACTTCAGCCCTCAACAACACCAAAGTCCAAGCACAACAAAAAAGCCTGGTCAAAACCCTGATCATCATCATTCAAAGACAGTGTCTGTGTCAACCCCACATGGAAAGACCTCGCATCATGGGAGTACTGGTTCTCGCAGTAACAGCTTAGAGAGCACAAGTGCACCCATTAGGCCACATACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGATTTCAAAGTGCGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACCAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTTCCAACTTTGTATTCTTACTTTGAAACTGAGAAGTTTTACTGTCTAGTGATGGAGTTTTGTAGTGGAGGTGATCTTCATACTCTTCGACAGAAGCAACCTAACAAGTGCTTCTCTGAAGAAGCTGCCAGGTTTTATGCCTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAGGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTAGTCAAATCTTCATCTGCCCATGCAAGCAACAATAGTGGTGGCAACAGTGACTCCAGTGGCGTACTAAGTGATGACCAAGCAAGCACAACTCAAGCATCTAGTTTTTTTCCGCGCATTTTACCTTCAAAGAAGAACCGCAAGGCAAAGTCGGATTTTGGCCTATTGGTTGGTGGAGCACGCCTTCCTGAACTGATGGCAGAACCTACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGAATCTTCTTGTATGAGCTGTTGCATGGATCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCTCAGGTCAGTTCAGTGGCTCGTGACCTTATTAGGGGATTGCTTGTGAAAGAGCCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACGGAGATAAAACAGCACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTCAGAAGTGCCACACCTCCACACATACCAGATACTATAGACTTCACCAAGTATGCCAGCAAAGACACACCACCCCCGGTGGACAAGAAGATGGCAGATATTGCTAATGATAAACACAACCATAATGCTAGTGATTCTTACGTAGATTTTGAGTATTTTTAG


Promoter Sequence:
>Vu_11760::LG3:5439725-5441725(-)
TTTCATTTTTTTTCTTCTTCATGTACCTTTACTATTTTATAGGGTTAAAATGTTTTAGATTCTACAATAAAAAAATATAGTTCTAGAATTAAAAGTAAATTGGACTACGTGATTTGTAATACATTTCCAGATTCAAAATATGTTCCAATTCAAAAGTTTCTTAACTACAATATAAAATGTTTTTAAATTAAAAATATATTTTAGATTATGCAATTCATAATTATATATATACTAATTCATAATATATTCATGTACTGTATAATTCAAAATATATTTTCGAATCTTTAAACATATTTCAAATACATTTTAAAATATTTTCAAATCATAAAATCTGAAATATATTTTTAATTTTGAATTGTACATAATTTATGGTGTACCATCTAAAATGTTTCTTATGTATAAATAATTTACATTTTTCCTGCAACTAGGAATAAATGTGTAAAAAGAAATATGTGCCTTTCAATAAATTGATATAAGTAAAGTTATAACATAGCCCTTTAACTCTTAATTATAAAAGAAACCACTCATGTAGATTGAATAACATACAAATCAACCTTAACTCCATGACATTTAATATACATAATCACATTAACTAACAAAGATAAACTTGAAGTTTTGGAGCCTCCATATACACTAAGGAATTAATATAATAGGAGTAAGATTATATATTTCGATAATATGACTACAAATCTTTGTAATTTGTAAAAAATAAAATATCAAAGTATATGCATTTCATATCTTAAGAATACTAAATTTATGATACAAAACACATAGGAAGATTAGTAGAAAAAAAATATTATTAGAGGATTTAAAAAAATATCAGTACACCATACAAACTATAATGTTGAACAACACAGAATTATTCCTTTTCCCATGTGAGAAGAAAATGAAAATACAATATGCAATGGTGGTGACAACAAAATGTTATATGATGATGTGAATTTATGGACACTATAGGAGTAGGCAGTTAAACCGCCATTTCCATTTCACAGAGAATATGACGCCTATCCATTCTTTTCCAAAATCACATTGATTTTCATATAGTTTTGATTTGCCAATTTTCTATATATAAATGTTGATTTTTTCCTAATTCTGGTTGTATTGCTATCTTCTACCTTTTCTTCCACAATTTCCTCTCAAGATACCCTAGTGTTTTTGATGATGGGTGGTGCTCCAATCAACAACCAGCTCATTTTCAACACCCTCATGTCATTTCCTGTCTAAACCAACCACCTTCACCTTTTCCCCCCAATCATTTTTCTCTCTTCTGCTTCAAAGGGTTAAAACTGTTAGATTCATTTTTCAACGCATCTGAAACTTTGTTGCTCATGTTGTAGCTCTTAGGTAACCAGAGGGAGTTATCAGCATTCATGCCATTTCTGACTTTCAGGTTTTATTTCCCCCAAATCTCTTTTCTTATGGATAATCAATCTTCAATGTATGTGCCATAATTGTTTGTTCATGTGCCTCTGTGATTAGTATTAATAATGATGATGATTTGGTTTCTCATCACTAAAAAATATAATAGTTATTATTATTATTATTATTCTTGCTTTCTGACTTTGAGAATGGTCACCATGTCCTATGATCTGCATCACATTTCATTACGTGGATGCCATGAATTTAGTTTTTCGTTCTTTATTCTTTTGACGTTTCTATCATGGCATCGTGCATGTTCAACAACTTCCCTATTAACTTATATGTATATTCTCTCACAAACACAATTATTTGAGTGGTTACATAGTTTCAGAATCAAGGTAGTGGCAGGAATTGAGTACTTTTAGTTTCTTAAATTATGGAAAGACCAACAACTAGTTTCTTATATTAGGTTGAGTTTTGTTTGAATTTTATTACCATTTAGATTTGTTTCAACAGTCCATGTTACATCTCTGTATAACTGATTTGCATGAGTTTTCTTATTTCTCTCTCTCTTTTCAGGAGTTCTTCCTCTTGAAGGGTTATTATTGTGTTGCCTTTTGATAAGATCAAATCCTGTCAAG


Gene Sequence:
>Vu_11760(-)
ATGCCTGATTTACCACCTGAGGTAAGAGTTTCATCTCTATGCATCCCCATAATTGACCACAAAATGCAATCAGTGCATTCAAGGTTTTAAAAATGGTATTGGCCACAACATTTCTATACTTCTTCACAAAAGTCCTTTTTTTGAGTATTTTTATGGCAATTGTCATCACAGCTTTTTTAAATTTATGCAGTGGGTATGCACTAACATATGTGAAAACTTCAAGGGAGTAAAATGTAAGAAGAAAAAAGAAAGTAATTTTAAAAACAAAATTAACTTAAGCATAAAATAAAAAATAAAATTTAAAGACACGATAACTTCTATAAATCAATGTATGCACAAATTGATTTTAACCAACAGTTTTGTTTTTTTCTATTTTTCTCTCCGGAAAAGTCTCATGTGAAATATAATTTCAAAGCACAAAATGAATCTTTGACCCAATTTATAACCTTGGATGCATCCACTTTTGGAGAAAAAAAAGAGCCTGAAAAAACTGAGTGAGAATTAACCAAAACTTCTGGTTCATTCATAAACACAGATGAGACACAATGTGTCAGAAGAGGCACACCCTAGTGTTCATAGCAGTTGTGCAAAGTCAGGAAAGAACTCACCAAGTCATCCCAATAATGTGAACCAAGCAGAAAAAGAGACCTTCAGAGCAGCAAATGTCCACACTTCAGGAAGGGAAACTGGACAATTGGACCAAGTTTCAAAATCTGATAATGCAAAGTGGGAAGGTAAATCAAGACCCCAGAGGCTAATTCCACCAAACAGGAATATCTCTGACTTCAGCCCTCAACAACACCAAAGTCCAAGCACAACAAAAAAGCCTGGTCAAAACCCTGATCATCATCATTCAAAGACAGTGTCTGTGTCAACCCCACATGGAAAGACCTCGCATCATGGGAGTACTGGTTCTCGCAGTAACAGCTTAGAGAGCACAAGTGCACCCATTAGGCCACATACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGATTTCAAAGTGCGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACCAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTTCCAACTTTGTATTCTTACTTTGAAACTGAGAAGTTTTACTGTCTAGTGATGGAGTTTTGTAGTGGAGGTGATCTTCATACTCTTCGACAGAAGCAACCTAACAAGTGCTTCTCTGAAGAAGCTGCCAGGTTAGTTAAACCTCACCATCTTCTAATCATAATTCATATTGAAAACCTTGTATGCAATTGGTAAACAGTATTGCAATATCTTGTACAAGTTTCTTCTTGAGAGTTTTAGAAGAAAAGAAATGGAAATCAATTTTAAAGTATCTCATTAATGAGTTAATTAATAAAAACTCTTGTAATTACTCTTGATTTTTATAAAAACTCTTGAGCATAACTTAATTTATTTTATAAAAAAGATTTTTTCTTTTTATTTCATTACCTTATCAAAGGCTGGGCACTCATTAGTATTTCATGTTTATATCATTTTGCCATCAGCAGGGACTTGTGTTAACCATCTGATTTCAGTTTGTAGATCAACTTCAGTACTTATATGCTTAAAAATCTTGTGATAGGTTTTATGCCTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAGGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTAGTCAAATCTTCATCTGCCCATGCAAGCAACAATAGTGGTGGCAACAGTGACTCCAGTGGCGTACTAAGTGATGACCAAGCAAGCACAACTCAAGCATCTAGTTTTTTTCCGCGCATTTTACCTTCAAAGAAGAACCGCAAGGCAAAGTCGGATTTTGGCCTATTGGTTGGTGGAGCACGCCTTCCTGAACTGATGGCAGAACCTACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGAATCTTCTTGTATGAGCTGTTGCATGGATCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCTCAGGTCAGTTCAGTGGCTCGTGACCTTATTAGGGGATTGCTTGTGAAAGAGCCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACGGAGATAAAACAGCACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTCAGAAGTGCCACACCTCCACACATACCAGATACTATAGACTTCACCAAGTATGCCAGCAAAGACACACCACCCCCGGTGGACAAGAAGATGGCAGATATTGCTAATGATAAACACAACCATAATGCTAGTGATTCTTACGTAGATTTTGAGTATTTTTAG