Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11878 LG3 7040566 7042071 PREDICTED: B3 domain-containing protein At4g01580-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of flower development, regulation of flower development, vernalization response, vernalization response, regulation of flower development, regulation of flower development, regulation of flower development
Cellular Component   located in   nucleoplasm
Molecular Function   enables   DNA binding, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 7040899 downstream_gene_variant
T/A 7040952 missense_variant p.Arg214Ser
C/T 7040953 missense_variant p.Arg214Lys
G/A 7040962 missense_variant p.Ser211Leu
C/A 7041137 missense_variant p.Gly153Trp
T/C 7041143 missense_variant p.Met151Val
C/T 7041224 missense_variant p.Gly124Ser
T/A 7041248 missense_variant p.Ile116Phe
C/T 7041254 missense_variant p.Ala114Thr
A/T 7041255 synonymous_variant p.Ala113Ala
T/A 7041311 missense_variant p.Ile95Phe
G/C 7041356 missense_variant p.Arg80Gly
A/T 7041362 missense_variant p.Ser78Thr
G/C 7041566 downstream_gene_variant
C/T 7041625 downstream_gene_variant
C/T 7041821 downstream_gene_variant
C/A 7041822 downstream_gene_variant
T/A 7041828 downstream_gene_variant
C/A 7041866 downstream_gene_variant
A/G 7041936 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11878.1
MEDRRRKHGGGSSERESKHFLKVILPSAIHANQMRIPEEFIKRFGDELSTVATITVPDGRVWKMRLKKYGKDVFFGSSWREFVNYYSLGYGSHLIFRYVGNSKFRVLIFDITAAEICYPLQTRGTNKPNWKRSKFENEQHHGHETKKKKRMVGNGVETKDEDDVNLIRPSETKGRKKKGDFSHGKQVKSGCRGNHSSWKIGKDVATASDRSMPRNPFVTCTIKSSRLYVSTEFACKYLKPGVGMMLQNSNGEQWDVSCSCHSRCRALIISRGWAKFMRDNDLSEGDQCLLELIKRDPIVLKCTVPGEA*


CDS Sequence:
>Vu_11878.1
ATGGAAGATCGGCGGAGAAAGCACGGGGGAGGGTCGTCGGAGAGGGAATCTAAGCATTTTCTGAAAGTCATACTTCCCTCTGCTATTCATGCTAACCAAATGAGAATTCCTGAGGAATTTATAAAGAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGTTGAAGAAATATGGTAAAGATGTTTTCTTTGGCAGCTCATGGCGAGAGTTTGTAAACTACTATTCTCTAGGGTATGGTTCCCACCTAATTTTCAGATATGTAGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCTCCAAACTCGGGGCACTAATAAACCAAATTGGAAGAGGTCCAAGTTTGAGAATGAGCAGCACCACGGCCATGAAACAAAAAAGAAAAAGCGTATGGTGGGGAATGGAGTAGAAACTAAGGATGAAGATGATGTGAATTTAATACGTCCGAGTGAGACTAAAGGAAGGAAGAAAAAAGGTGATTTTTCTCATGGGAAACAAGTCAAAAGTGGATGCAGAGGAAATCACTCTTCTTGGAAGATAGGAAAGGATGTTGCTACTGCTAGTGATAGATCGATGCCAAGAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAACTGAATTTGCTTGCAAGTATCTGAAGCCAGGTGTTGGTATGATGCTCCAAAATAGTAATGGAGAGCAGTGGGATGTTTCTTGCTCATGTCATAGCCGTTGCAGAGCATTGATAATATCGAGGGGATGGGCTAAATTTATGAGGGACAACGATCTATCAGAAGGAGATCAATGTCTGTTGGAGTTGATAAAGAGGGACCCCATTGTGCTAAAATGTACTGTGCCTGGCGAAGCTTAA


Promoter Sequence:
>Vu_11878::LG3:7042071-7044071(-)
CTCATCTACATGATCATCCTCATTCTCATCCTCTTCTACATCTTCTAGCTCAAAATCATTTACATCATGTACCTCAACCTCCTCTACGTCATGTACTTCACCATCCTCAACATGTTCAATCTGTTTAGCAACTTCACTCTCACCCTGCTCCATTTTTGTTCCAACTTCAACCTCACCCTCACAGTGACCCTCCTCCATTTCTGTTCCAACTTCAACCTGACCCTTATCCTCACCCTCAACCTCACCCTCAACCTCACCCTCAACCTCACCCTCAACCTCACCCTCAACCTCACCCTCAACCTCACCCTCATCCTCACCGTGAACCTCACCCTCAACCTCACCCTCCACTTGTCTTGCAACATCACCTTCATCATTAACATCGCTATCAACCCAATCAATCATTTCTATTATCTGTGGTTCCATGGTATTATGAACCACGTACAAATGAATTTCATCCTTTAACTTTGCAATATTCAACATATGCATAGCACCCCTATCATCAGTCAACAATTCTAACATATTTGGCACCATTGACTGACCTCCTAAACTGTACCAAAGTTCTTTTATGTCTATATAACCTAAGTCTTTCACTGAAGCTAATATTCCAAAATAACACCACAAGTCTGGATCACAAGACCATTCTGCTATCTTGCCATCAAATTTTAAATTTCCATTGTCATCACTAACAAAATTCTCACAATGATGGACCACAACTTTAATACGTTCAGCCATGCAATATTATGCTTGAAGCACAAGCTTTTAAGACCTGTACATTGGGGGGAAATATTATGATTTCACTCTTTACTAACTAAGCAAACAATCAGACATCAAGGGGCAAGTCAAAGGTGCTCCGATGCTTAAGTCAGTAAAGGTCCGATCGGTTGTTTTAGTACTAGAATAAATGAACAATTAATTAATCTGCCTATCTCTTACCTTTGACTTGTATTTATAGTTTTGGTCATGAGTCTAGGATTAGCAAAGCCTTACGACCCAATCCCGAACCTAAACCTCGGTGTTTTACCTTAATCACCTCCGCAAATCTACCTGTCATGACCGTCCAGGTTGAGTGCTCGAGCAAAGCCGAACGTCCCACGTGCTAAGTCTGGGACCGTCCAGGAGTCATCTTATACAGTTTTAGTTTTTTTAACATTCTTTTTTCTTTTAGTAAAATCTGTCACTTTATCACAAAAGAATAACTATGTAAAAGTTAAGTCTTAAATATTTTTTATTTTAAAAAAAAAGTTATATTCGTATAGTCAAAAGATCTTATTCAGATTATTAATCTGGTACAATGAAGTAAAATAAATAAATTAAAAATAAAATAATTTTTAATATTTATTACTCTTGGTGGTCCTAACTGTTACGGCAAAATTATCTCTAATGATCACTATAATAAATATAAAAAAGAGAACAAATAAGTTTTATTAATTTAAATTTGATTTTGTATTTAATAAAACAGAGGTTTATTTAAGTTTCAATTCTCTTGCAAATTTGAATATTTTGAATTGAGATTTTGTTACATGCTTTTTTTTTTATTGAATATTATAATTTTTTATATTTTATAATTGAGCTTGTGTCAATTACTTTTTCATTAGATGAATAACCTCTTATCTTACTCAGGCCTCTTGGTGGCTTGTCCCTAGATGTTAATAATTGTGAGGAGTGTAATTGATATAAAATTATGATATTACGATTAAGTATAACATGTTAAATAATAAAAAACGTTTGATCCATCATGATGATAATGGTACAGTTTCTTAATTAATATAAGAGACAATGTGAAAGATAAAATCTTGTATCTTTTAATAGTGATTAAATCAATTAAATAAAGAAAAAATAAATCATATATACTTAATTAAAAAATAAATAAATCTAAACAAAAAAAGTAATCATATGACACGAAAATTAAGGCTGAAATTAAATTTTTAATGCTCGAAAGAAGTATTATGGTATCTTGTCAACCCAAGAAGTGGTGGATGTAGGTAGAATCCTCTGTTCCA


Gene Sequence:
>Vu_11878(-)
ATGGAAGATCGGCGGAGAAAGCACGGGGGAGGGTCGTCGGAGAGGGAATCTAAGCATTTTCTGAAAGTCATACTTCCCTCTGCTATTCATGCTAACCAAATGGTAACAAACAAATCTAAGCATTTTTCTGTTTGCTTTTTTCTTTTCTTCCTCTTCTTTCTTTCACCTCCATCATGCATCATTTTACATGCTTCCTTCTATTTTAGATCAAAGTTTGGAGTTTTTTCTATGTTCTATAAGCGCACAACCGGAAAGATTTGAACTTGGAGGAAGATTAGCCTAATTGTTTGTACTTCTCTGCATGCAAACATATTCATTAAAAAAAATGAATCTTTTTTCTTTTTTTCATTTAAAAAATGTCTGTACTTATCTCTTTTTTGCTTCATTATCTCACTCTGTAACTTCTTTGCATGTTTAACATTTGATGCTGTTGATTAAGCTAAATAGTTATAACTATGGCATTGTGCATGACCTGGGGAGGATGTTCTTCTTTGCTTCTTTTCTTCACTTGAGAAGAAAGTGTTGCAGTTTAAATTATCTACTTAGTGTGAGTGACTAATTTAAGAAGTGATCACTGCAGAGAATTCCTGAGGAATTTATAAAGAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGTTGAAGAAATATGGTAAAGATGTTTTCTTTGGCAGCTCATGGCGAGAGTTTGTAAACTACTATTCTCTAGGGTATGGTTCCCACCTAATTTTCAGATATGTAGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCTCCAAACTCGGGGCACTAATAAACCAAATTGGAAGAGGTCCAAGTTTGAGAATGAGCAGCACCACGGCCATGAAACAAAAAAGAAAAAGCGTATGGTGGGGAATGGAGTAGAAACTAAGGATGAAGATGATGTGAATTTAATACGTCCGAGTGAGACTAAAGGAAGGAAGAAAAAAGGTGATTTTTCTCATGGGAAACAAGTCAAAAGTGGATGCAGAGGAAATCACTCTTCTTGGAAGATAGGAAAGGATGTTGCTACTGCTAGTGATAGATCGATGCCAAGAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGGTGAGAATAATTTAGCTTCAATATAGAGTTAAAAAAAGTAGTGAATTATGCATGCATAATGTTTTGCAGTGATCAAATTAAAGCTGGTGTTCCTTGTGCAGTATGTGTCAACTGAATTTGCTTGCAAGTATCTGAAGCCAGGTGTTGGTATGATGCTCCAAAATAGTAATGGAGAGCAGTGGGATGTTTCTTGCTCATGTCATAGCCGTTGCAGAGCATTGATAATATCGAGGGGATGGGCTAAATTTATGAGGGACAACGATCTATCAGAAGGAGATCAATGTCTGTTGGAGTTGATAAAGAGGGACCCCATTGTGCTAAAATGTACTGTGCCTGGCGAAGCTTAA