Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11935 LG3 7787493 7791135 PREDICTED: probable WRKY transcription factor 2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   establishment of cell polarity, regulation of transcription, DNA-templated, longitudinal axis specification, longitudinal axis specification, longitudinal axis specification, longitudinal axis specification, longitudinal axis specification, pollen development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09159 Environmental adaptation   C 04626 Plant-pathogen interaction [PATH:ko04626]
SNP Position Effect Amino acid change
G/A 7787669 synonymous_variant p.Ile644Ile
G/C 7787682 stop_gained p.Ser640*
G/A 7787706 missense_variant p.Ala632Val
T/C 7788033 upstream_gene_variant
A/C 7788080 upstream_gene_variant
A/G 7788441 missense_variant p.Val488Ala
C/T 7788959 synonymous_variant p.Gly315Gly
T/A 7789017 missense_variant p.His296Leu
C/A 7789021 stop_gained p.Glu295*
A/C 7789834 intron_variant
T/A 7789836 intron_variant
A/T 7789922 intron_variant
A/G 7789973 intron_variant
T/A 7790058 intron_variant
C/T 7790060 intron_variant
C/T 7790223 intron_variant
G/T 7791080 missense_variant p.Pro19Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11935.1
MAGIDDNVALSGDWGLASPSPRTFFSRMLEEENVTRSVSEHSGSGRTGEFFSGPHEPSETGKRNMQDATQDGDSVAQLSFQTEQKPNSRGGLVERMAARAGFNAPRLNTEGIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMSNGNMRHPELSSDAPEKCKDNGFDDIYTSSFAFKPATDSGSSFYHGAGRKINPTTFPQQSHPGIEVSAQSENSFHSQSVDAAKVQTENKNGLHLQADFAESPPEKDIKMFPADQRAFDAVGGGIEHSTPVEEHGDEEGDQRANGDSVTGGVGGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPSRRSGIGSVNPHTDMQVDNPEHVELHNGGDGDIGWGNVQKGNIAGAANWKHDNLEATSSASIGPEYCNQSNLQTQNGGTLIDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYADLSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPSSHVNANASNANQASGVLHSHVHRPEPSQVHNGMGRLERPSLGSFNLPGRQQLAHSHGFSFGMNQHMLSNLAMSGLGHMQAKLPVMPVHPFLAQQQQQSPSNDFGFMMPKGEPNVEAIPERGGGLNLPNGSSVYQEIMSRMPLGPHM*


CDS Sequence:
>Vu_11935.1
ATGGCTGGGATTGATGATAATGTTGCCCTTTCTGGCGATTGGGGTCTTGCTAGCCCAAGTCCAAGAACATTTTTTTCTAGAATGTTAGAGGAAGAAAATGTAACAAGATCAGTCTCAGAGCATTCTGGAAGTGGTAGAACTGGGGAATTCTTTTCAGGACCACATGAGCCTAGTGAGACAGGGAAGAGAAACATGCAGGATGCAACACAAGATGGAGATTCTGTAGCCCAATTGAGTTTTCAGACCGAGCAAAAGCCTAACTCCAGAGGTGGTCTTGTGGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCTAGGTTGAACACTGAAGGCATTAGATCTACTGATCTTTCACTCAATTCTGACATTCAGTCTCCTTACTTGACCATCCCACCAGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACTGGAAAGTTTCTGTTTATGTCAAATGGCAACATGCGGCACCCTGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAATGGCTTTGATGATATCTATACATCATCCTTTGCTTTCAAGCCTGCAACAGACTCAGGCTCCTCTTTCTATCATGGGGCTGGAAGAAAAATAAATCCAACTACATTTCCTCAACAATCCCATCCTGGTATTGAGGTTTCGGCTCAGTCAGAAAATTCTTTTCATTCCCAAAGTGTTGATGCTGCCAAAGTTCAAACTGAGAACAAAAATGGTCTTCATCTTCAGGCAGACTTTGCCGAATCGCCTCCTGAAAAGGATATTAAAATGTTTCCAGCTGATCAAAGGGCTTTTGATGCTGTTGGTGGTGGCATTGAACATTCTACACCAGTTGAAGAGCATGGAGATGAAGAAGGAGATCAAAGAGCCAATGGAGATTCAGTGACTGGTGGTGTTGGGGGCGCACCATCTGATGATGGATATAACTGGAGAAAATATGGCCAAAAACAAGTGAAAGGCAGTGAGTACCCTCGAAGTTACTACAAGTGTACCCATCCAAACTGTCAGGTCAAGAAGAAAGTAGAACGATCCCACGAAGGCCACATAACTGAGATCATCTACAAGGGAACGCACAACCATCCAAAACCTCCTCCTAGTCGCCGATCAGGCATAGGTTCAGTTAACCCTCACACTGACATGCAAGTTGACAACCCTGAACATGTTGAATTACACAATGGTGGTGACGGTGACATCGGCTGGGGTAATGTACAAAAGGGAAATATAGCTGGAGCTGCTAACTGGAAGCACGATAACCTTGAAGCAACATCATCAGCATCTATTGGCCCTGAGTACTGCAACCAGTCCAATTTGCAGACGCAAAATGGTGGTACTCTTATTGATTCAGGAGAGGCAGTTGATGCCTCGTCTACTTTCTCTAACGAAGAAGATGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCCAAGAGAAGGAAACTGGAATCATATGCAGACCTGAGTGGAGCTACTAGAGCCATCCGTGAGCCTAGAGTTGTTGTACAAACTACCAGTGAGGTAGATATCCTCGATGATGGTTATCGGTGGCGCAAGTATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGTAGCCATGTCAATGCTAACGCGTCAAATGCCAACCAAGCTTCTGGTGTTCTTCATAGCCATGTTCATAGACCGGAACCATCTCAAGTACATAATGGCATGGGAAGGCTTGAGAGGCCATCCCTCGGCTCGTTCAACCTACCTGGAAGACAGCAGCTAGCACATTCCCACGGCTTCTCCTTTGGCATGAACCAACACATGCTATCGAATCTGGCAATGTCAGGGTTAGGCCACATGCAAGCCAAGCTCCCTGTCATGCCTGTTCATCCATTCTTGGCACAGCAACAACAGCAAAGTCCTTCAAACGATTTTGGTTTCATGATGCCAAAGGGAGAGCCAAATGTAGAGGCTATTCCTGAACGTGGTGGTGGCCTTAACCTGCCAAATGGCTCATCAGTGTACCAAGAAATCATGAGTCGCATGCCCCTTGGACCTCACATGTAA


Promoter Sequence:
>Vu_11935::LG3:7791135-7793135(-)
ATGAGAAAAAATTAAATTAATAATTTATTTTTTTTAAAAAGTAGAAATATTTTTCATTCAAAAGAAAAACATAAAGTAAAAAGTAAGCTTCAATTATAAAACTTAAAGTTATATATTTTTTACCTTAAATATGTTTTGATAAGTTAAGGTAGAATTTCTAAAATAACCAATCATCATTAGTCACATTTTATATAAAAAATTAATATAGATGAAAACAAATACTAACTTTTTTCTAAAACCCTAAAATATAATTAATTTCACATCTGATCCCAATCGTACATAATTATTTATAATTAAATGGTCGAATAGATTTTACATGAGTATACTTACAAATTTTCATTCAACAAAATAATATCTATGATGTAATAGAAGATAATTGTCAAAAAACTAAACAAATTATCATGCGTTATTTGTAACTTAAAAAACGTGTATAAAATTATGTTCAATTATTGTAAAGAGACAATAACACACTTTTTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTGAAGATGTTTGTCTAATAACTGATGAAAGTTTATTAAAAGGTATAAAATGAGAAAAGAAAAACATTAAATAAGACATGAAACTAATGGAATGTAGTAATCTATAATTAATATTAATTTATGGAAGAGAATATATTAAAAAATGTGTTAACATCCTCCATGATTGCAACATAGCTCCTAAAAGAAAACAAAAACAAGAATTTGGGTGTGTTATTATTGATTAAAATAAAAATGAAAAAGAAAGAATTGAAAGGGAATGAATAAGTGTCTGAAAAGAGAATTAAAGATAGGATATGTTTGTGTGTCAAAGATTCCTTTGATTTTTGAGGTCCACCACCATTTCTCAATCATCTCTCTTTTCTCTTCCACCTTCCCCACAAAGTCCTTATACCCTTTTGCTTTAACAACAGTGCTAATTATTTTTCATTTTCCAGATTAATAACAATGCCATAATTAATTAATTTTTAAAAAAAATTATTTATTTTTTTATTTATGCAATAAAAAATATGGCTCTTTTTGTAACTATTCTCCTTCCTCTTCTTCCTCTTTTTCCTCCTTCAACAGCACAATCATTTCATTTCATTTCTATATTTTGAGACAATTATTTCTAAACACACAACAAAGCACAACACAACACAGCCAGAGAGACAACAAACAACTGTTAGAAACAACATCAGTATGGTGAGAAAACATAGTTGGATCAAATTCCATTAACCGAGGAAAAAAAAAGAGAACCAACAAAAACCCAGATAACTGGTTGGGTCGGGTTCGGGTTTATCGGATCCGTTTCTCTGGTTCCAACCGTTGATGTTGTTGCTGTCGCGGTGATTATAGTGCTCGTGGTTGTTCTCTTTCAGGAATCTCAATAATTCATTGTTTTTTAGGTAAACTCATGCATCATTCTCTCTCTTTTGTCTCTTTCTCTTTCTCTCTCTGTCTCTCTCTCTTTCCCTCTGTTTTTTTTCCTCTATTTTTTGTTGTTGTGTTTTTACCTTGTTTGTTTGATGATTTAAACGATTCTGAAACAATGTTGTTGTTCGTTGCGTTTGATGAATTGGGTCGTGTTTTCTGTGTTCGGATTGGGTTCCTTTTTGTCCCATTTGAGGTTTATATTATTTTCTTGTTGCGAGGAGCGGATAGAAGAAAAAAAAAAGGATCTTTTTTTAATCTATAACTCTGAGACTTTGTCAAATGGTGAATGAGAAAAGTGGGGGACATGGATTTTTAAAATTTTTATTGTTGAAAGCGTTGTCCTTGGTGATTCATGTTGGCAGGGTTGTCCTTTATTTTGTCAGCCAATTAGGCAAATTGCATATATGTCTGTAAACAAAATCATTTGCTTTTTCTTTTGAGTAGTTGTCATTTTGTGTTGCAGGAGCTGAAGGTGGGGTTTCTATGTTTTTGCCTTATTTTCAGAAAATTTTCTGTTTTCAGGTTAGGTGTTCTTGGGGTGAGGTCTGA


Gene Sequence:
>Vu_11935(-)
ATGGCTGGGATTGATGATAATGTTGCCCTTTCTGGCGATTGGGGTCTTGCTAGCCCAAGTCCAAGAACATTTTTTTCTAGAATGTTAGAGGAAGAAAATGTAACAAGATCAGTCTCAGAGCATTCTGGAAGTGGTAGAACTGGGGAATTCTTTTCAGGACCACATGAGCCTAGTGAGACAGGGAAGAGAAACATGCAGGATGCAACACAAGATGGAGATTCTGTAGCCCAATTGAGTTTTCAGACCGAGCAAAAGCCTAACTCCAGAGGTGGTCTTGTGGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCTAGGTTGAACACTGAAGGCATTAGATCTACTGATCTTTCACTCAATTCTGACATTCAGTCTCCTTACTTGACCATCCCACCAGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGTGAGCTCTGGTTTATTTGTGCTCTGTGGTTTTTTTTATCAAATTTGCTTTTTATTCCTTCAAACCCCAAGAATATAGGATAGATCCTAGATTTGGCTGTTAACATGCTACGCCACACTACAAATCACGCACTGTTATTTCTTCTGATGTCTGTGTCTGATATGATAGACAACAGTTTGCATGACTGTGTATTTAATTCTTCCATGTAGTATTTTTGTCTTAGTTTGGACAATCTGAGGATTCATTCCAGGTCATTTCTTCAACTTGTACAATGGTTTTGTTATGTGATCTCAAGGTTTCCTAAGAATGACCCTTTCTGTTTCACTTCCTGGTTTCACGCTTTCATTTTCTTCCTTAGGTTTCTTTTCTGTCCTTTCTTAAACTCCTGAAATTTCATTAGCGGCATGCTGTTTGGTTAATATGGTAAATCTTTTCTGACATCATAATTTTGAAGTATACTCTGGAACAGCTTGAAAGAAATCATGTCCCATTGTGACTTTTTCCTTTTTCAATGTACTTTTTGTGCAGTAGTTGGTGCATTCAGACATAGAATTATATCTAAATATATGTTGGTACTTTCTACTTTGAAAAAAATGATAGGTAGGACCCTGTTGTCTTGGTAATGGTATGTGACTGTGCTTATAATTCTATTTGATTTTCATTTTATAGTGTTACTCACATTTTCTAACATGGAAACTATAAGTTGCTTAGATTCTTACTGCTCTGCATGCTGTGCAATGAGGCACCTTTATTATGCTCTTTCTAGACATCTGGTGTCAAATTTAGATTTTAGAATCTTAAATTATCTCTTTTTGTTTTACTTGGTTCTGTTGACATTGTTCTGTTGACATTGTTCTGTTGACATTGTTCTGTTGACATTGTTCTGTCTCTTATTGAGCTATGAATTTATCTTCTGTTGTAGGAAATTGATACCTGGTTCTGTTGACATTGTTCTGTCTCTTATTGAGCTATGAATTTATCTAATTTCAGGCACAGCCATCTCCAACAACTGGAAAGTTTCTGTTTATGTCAAATGGCAACATGCGGCACCCTGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAATGGCTTTGATGATATCTATACATCATCCTTTGCTTTCAAGCCTGCAACAGACTCAGGCTCCTCTTTCTATCATGGGGCTGGAAGAAAAGTAAGCACATTCTAAAAATTTTTTTATTACCAAAATGTAGATACTAGTTTTTTGACAAAATTACTTTTCAGTCAACATCCCATGTCATTAGCACACATTTTTGTGCAATTATTGATATTTAGATTCAAATTAGATATACTAAGGATTTGTATGGAGTTAGTTGACACTTGACAGTATGTGTTGGCAATGATATTTATATCTGTTTTTCCTTTTTGGTCATTTAGTCTGTCCTCTGTTTGCAGATAAATCCAACTACATTTCCTCAACAATCCCATCCTGGTATTGAGGTTTCGGCTCAGTCAGAAAATTCTTTTCATTCCCAAAGTGTTGATGCTGCCAAAGTTCAAACTGAGAACAAAAATGGTCTTCATCTTCAGGCAGACTTTGCCGAATCGCCTCCTGAAAAGGATATTAAAATGTTTCCAGCTGATCAAAGGGCTTTTGATGCTGTTGGTGGTGGCATTGAACATTCTACACCAGTTGAAGAGCATGGAGATGAAGAAGGAGATCAAAGAGCCAATGGAGATTCAGTGACTGGTGGTGTTGGGGGCGCACCATCTGATGATGGATATAACTGGAGAAAATATGGCCAAAAACAAGTGAAAGGCAGTGAGTACCCTCGAAGTTACTACAAGTGTACCCATCCAAACTGTCAGGTCAAGAAGAAAGTAGAACGATCCCACGAAGGCCACATAACTGAGATCATCTACAAGGGAACGCACAACCATCCAAAACCTCCTCCTAGTCGCCGATCAGGCATAGGTTCAGTTAACCCTCACACTGACATGCAAGTTGACAACCCTGAACATGTTGAATTACACAATGGTGGTGACGGTGACATCGGCTGGGGTAATGTACAAAAGGGAAATATAGCTGGAGCTGCTAACTGGAAGCACGATAACCTTGAAGCAACATCATCAGCATCTATTGGCCCTGAGTACTGCAACCAGTCCAATTTGCAGACGCAAAATGGTGGTACTCTTATTGATTCAGGAGAGGCAGTTGATGCCTCGTCTACTTTCTCTAACGAAGAAGATGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCCAAGAGAAGGTACTTACATACCATTAGCTTTTATTTTTCATGCAAAACTGATATTTATCTGTCTTACATATTGAAATCAATGATCTATTTTCTCAGGAAACTGGAATCATATGCAGACCTGAGTGGAGCTACTAGAGCCATCCGTGAGCCTAGAGTTGTTGTACAAACTACCAGTGAGGTAGATATCCTCGATGATGGTTATCGGTGGCGCAAGTATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGTGGTCATTCTACCACAGAAATTATAGTAACAATACATCATTTCTTTTGTGGTAAAAATCTGAATGTAGTTGTTTTGCTGCAGGAGTTACTACAAGTGCACAAATGCAGGCTGCACAGTAAGGAAACATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACCACTTATGAGGGAAAGCACAACCATGATGTTCCTGCTGCTCGTGCCAGTAGCCATGTCAATGCTAACGCGTCAAATGCCAACCAAGCTTCTGGTGTTCTTCATAGCCATGTTCATAGACCGGAACCATCTCAAGTACATAATGGCATGGGAAGGCTTGAGAGGCCATCCCTCGGCTCGTTCAACCTACCTGGAAGACAGCAGCTAGCACATTCCCACGGCTTCTCCTTTGGCATGAACCAACACATGCTATCGAATCTGGCAATGTCAGGGTTAGGCCACATGCAAGCCAAGCTCCCTGTCATGCCTGTTCATCCATTCTTGGCACAGCAACAACAGCAAAGTCCTTCAAACGATTTTGGTTTCATGATGCCAAAGGGAGAGCCAAATGTAGAGGCTATTCCTGAACGTGGTGGTGGCCTTAACCTGCCAAATGGCTCATCAGTGTACCAAGAAATCATGAGTCGCATGCCCCTTGGACCTCACATGTAA