Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12042 LG3 9462425 9466854 PREDICTED: transcription factor GAMYB-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of abscisic acid-activated signaling pathway, protein storage vacuole organization, response to gibberellin, positive regulation of transcription, DNA-templated, positive regulation of abscisic acid-activated signaling pathway, anther development, pollen sperm cell differentiation, positive regulation of abscisic acid-activated signaling pathway, anther wall tapetum morphogenesis, response to gibberellin, pollen sperm cell differentiation, response to cytokinin, anther wall tapetum morphogenesis, negative regulation of cell population proliferation, pollen sperm cell differentiation, anther development, positive regulation of abscisic acid-activated signaling pathway, response to cytokinin, positive regulation of programmed cell death, anther wall tapetum morphogenesis, positive regulation of transcription, DNA-templated, negative regulation of growth, gibberellic acid mediated signaling pathway, anther wall tapetum morphogenesis, pollen sperm cell differentiation, anther development, anther wall tapetum morphogenesis, gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, response to ethylene, positive regulation of transcription, DNA-templated, positive regulation of programmed cell death, anther development, positive regulation of abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, response to ethylene, gibberellic acid mediated signaling pathway
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 9462454 synonymous_variant p.Asp10Asp
G/A 9462464 missense_variant p.Gly14Ser
C/T 9462477 missense_variant p.Thr18Ile
G/T 9462583 synonymous_variant p.Thr53Thr
T/C 9462586 synonymous_variant p.His54His
T/C 9462637 synonymous_variant p.Cys71Cys
A/G 9462833 intron_variant
C/T 9462841 intron_variant
T/C 9462871 intron_variant
C/T 9462934 intron_variant
A/T 9462935 intron_variant
C/A 9462970 intron_variant
G/A 9463047 intron_variant
C/T,* 9463052 intron_variant
G/T 9463109 intron_variant
C/T,* 9463184 intron_variant
G/T 9463235 intron_variant
G/C 9463251 intron_variant
T/C 9463295 intron_variant
G/A 9463309 intron_variant
C/A 9463315 intron_variant
C/T 9463346 intron_variant
T/C 9463350 intron_variant
C/T 9463366 intron_variant
C/T 9463379 intron_variant
G/A 9463387 intron_variant
A/G 9463437 intron_variant
T/C 9463454 intron_variant
G/A 9463475 intron_variant
C/A 9463496 intron_variant
C/T 9463498 intron_variant
T/G 9463514 intron_variant
G/A 9463533 intron_variant
C/A 9463555 intron_variant
C/T 9463674 intron_variant
T/G 9463682 intron_variant
C/T,* 9463755 intron_variant
T/C 9463789 intron_variant
G/T 9463849 intron_variant
G/T 9463855 intron_variant
A/G 9463864 intron_variant
T/G 9463870 intron_variant
G/T 9463882 intron_variant
G/A 9464033 intron_variant
T/C 9464044 intron_variant
T/G 9464069 intron_variant
G/A 9464099 intron_variant
C/A 9464149 intron_variant
C/A 9464152 intron_variant
T/C 9464153 intron_variant
T/C 9464208 intron_variant
C/T 9464218 intron_variant
G/A 9464234 intron_variant
T/A 9464236 intron_variant
T/C 9464269 intron_variant
T/G 9464278 intron_variant
G/A 9464284 intron_variant
G/A 9464308 intron_variant
T/C 9464396 intron_variant
A/T 9464461 intron_variant
C/G 9464502 intron_variant
A/G,* 9464553 intron_variant
G/C 9464579 intron_variant
G/T 9464592 intron_variant
G/A 9464793 intron_variant
G/T 9464820 intron_variant
G/A 9464895 intron_variant
A/C 9465022 intron_variant
G/A 9465048 intron_variant
G/C 9465069 intron_variant
G/T 9465116 intron_variant
C/A 9465128 intron_variant
C/T 9465335 intron_variant
G/A 9465716 synonymous_variant p.Thr230Thr
T/C 9465722 synonymous_variant p.Pro232Pro
T/A 9465897 missense_variant p.Tyr291Asn
C/T 9465899 synonymous_variant p.Tyr291Tyr
T/C 9465976 missense_variant p.Leu317Pro
A/C 9465982 missense_variant p.Tyr319Ser
T/C 9466010 synonymous_variant p.Gly328Gly
G/C 9466031 missense_variant p.Leu335Phe
G/T,* 9466145 synonymous_variant p.Ala373Ala
C/A 9466461 intron_variant
A/T 9466468 intron_variant
G/A 9466522 intron_variant
G/T 9466537 intron_variant
C/G 9466559 downstream_gene_variant
G/C 9466597 downstream_gene_variant
G/T 9466609 downstream_gene_variant
C/T 9466640 downstream_gene_variant
G/C 9466651 downstream_gene_variant
T/C 9466704 missense_variant p.Ser463Pro
G/A 9466710 missense_variant p.Glu465Lys
G/T 9466765 missense_variant p.Gly483Val
C/T 9466814 synonymous_variant p.Ser499Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12042.1
MGQMTHEIDDTVHGKNQTGSRLNDGGIGGGVVLLKKGPWTAAEDVILVDYVNTHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMITELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVVLQAFQDNKHDQGTAEISDGDGGHQDFMEKNNYEIHDAIYDSLKENQGILPFVPQLPDISANSILPNVLGSPPYCNFLPSTLPNHDHLQESSVSFIGSNELNSNGFYPFDHFKDNTSDKIAESFGLHSPLDHGASSYGSICYSHSISNDNYSTSKLASEAVKSELPSLQYPETEFGSWGTSPPPPLNDSTDVFIHSPQPPYALDSGSSSSLTRCFLNEFLYQQAKTLGYSNNNWPESSNSSIATPVDGAESSALNMYETEWEDYADPVSSFGATSILNEHPVVGTNGKPWDGWEPFQTFSGNNVKLQSVDQVSAPKSENQSMSLLNLTWPDVLLASDWHELYSEHNNMNQADMIDASDNFTRQ*


CDS Sequence:
>Vu_12042.1
ATGGGTCAAATGACACATGAGATTGATGATACTGTGCATGGTAAGAATCAGACTGGGTCACGGTTGAATGACGGTGGTATTGGAGGAGGTGTTGTTCTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATACGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTATTCAGGACTTTCTCGTTGTGGAAAAAGTTGCAGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATCACTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCGGAAGTAGTACTGCAAGCATTTCAAGATAATAAGCATGACCAAGGTACTGCTGAAATCAGCGATGGAGATGGAGGCCACCAGGATTTCATGGAGAAAAACAATTACGAGATACATGATGCAATATATGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTCAGCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCTCCATACTGTAATTTCCTGCCATCGACGTTACCTAACCATGATCATCTTCAAGAGTCATCCGTGTCTTTTATTGGTTCCAATGAATTGAACAGTAATGGGTTTTATCCATTTGACCACTTTAAGGATAATACTTCTGATAAGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATCTGTTACAGCCATTCAATATCGAATGACAATTACTCTACTTCTAAGCTAGCTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGATTCTACTGATGTTTTCATCCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCTTCATCACTCACTCGTTGCTTTCTTAATGAATTTCTTTATCAGCAGGCGAAGACTCTTGGTTATTCAAATAATAATTGGCCTGAGAGTTCAAATTCATCCATTGCAACTCCCGTTGATGGAGCTGAGAGTTCAGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCTTCCTTTGGTGCAACTTCAATCCTGAATGAGCATCCTGTTGTTGGCACCAACGGAAAGCCATGGGATGGGTGGGAACCTTTTCAGACCTTTAGTGGCAACAATGTGAAATTGCAGTCAGTTGATCAGGTTTCGGCTCCTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATCTCACTTGGCCAGATGTCTTGCTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCACAACAATATGAACCAAGCTGATATGATTGATGCTAGTGATAATTTCACGAGACAGTAA


Promoter Sequence:
>Vu_12042::LG3:9460425-9462425(+)
ATTGAACAATCAAATATGAATCTTTGACAAACTATAAAAAAAAACATTAGATGCATACACAACTTAAATTTAGTCTTCTCACATTCTTTTACTCATGTGAAATTAGATTCTATAAGAAGAAATATTTAGACTTTATATATCTTGTTGGTGAAAAAACTTTTCTTGTCAACACAAAACAACCTTTATTATATAGTCAAAAGTGACTCTATGTTGTTAACCTAATGACATAATAAATAAAGTAAATTAAAAACATATCATAGCCAAGTCAAACATTAAAGCACATAATTATATAAAATGTTTGATAAAAAATAGTAAAAGTTGACAATCTTCAAGTCAACTCCATGTTTTTTTTTATTAAAATAAGTAAAAGTGTATTTATACAATTTGTTTATTTCTTAACTAGTAAATCTGTTAACAATATCACTTCACTGAAAAATATTAAAAAAACCATGTCAATATATTTGATTATAATTAAGGCGAATTAAGGTGTATTGGAAGAAGCTTATATAAAAACATTTTAACATAAAAAATGATATAATTTTGTATAAATTAAAGTTTATTTATGAATAAACTAATTTTTGTAGGTTTTAACTCAAAAAAAAAATAAAAAATCATACCCTGCAGCACTATATATATTTCTCTCTTCACTTGATGTTTTTTTCTTCACTTCTTCTCACTCTCTACATTTTTGTTTTCTCTAACCCTTTTATTTTTCTGTCTCTCTGCATGAGACTGCGAATGTTTGAGGCTTTGATCTCATGTTCTTCTCTCTCTTCGCTCTGATCCTCTTCCAACCACGGTTGTACTCCCATTCCCATTTCTCTCTTTTCGTTCTCTCTGTGAATCTGAATTCTCAATTCAATTTTATTATTTTTATGATTGGATAGATTGAAATTCCGAAACCAATTCATCGTTATACTGTGTACACAAATGTTGTATGGAATTCACTTTATTGGGTCTAATTATTAGTTGTTTATTTAAATTTCTTTATTTTGCTTTTCATCTGTGAATTTCAGGGACGCGGTTTTCCTTCAGTTTTTAACTCAGGTTCAGCTTCTCTGCTAGCAACAATAAGATTCATGTTTATTGGGAATTTGAACTAAAATCCTTGGGTTTTAGATTTTAGCTTGAGTACTCTCACGTCCTGTTTAGGTATTATTATTAATAATATTACGATTATTTATTATTATTATTATTATCCCTACTTTTATTTACTAATAAGTTCCTTTCCTTTGAAAGAATTTTGGACGTGTTAAGATGTGAAGTCGCTGTTAATTTTGTTGAAGTGTTGAAAGTGAAATTTGCTCTTTTAATCATGTTTTTTTTTTTTTGTAATAATTATATATTGCTGTAAGCAGCACCAGGCTTGTGGGGATATTGAATTCTGTATTGTGGGTATGGTCTGTTGGAGAAATTTTTTGTTTTTCCATCTCCAAGAGAAAAAGACTTATGTTCCTCTTTGTATTTACTTTCTGTTTGGGTAAGAATGGTGAATATGATTTGAAACTGTGACAATTGTACTTGGTTTTATTTTGGAGTCTGCTTTCCTGGTTTAGAGAAGATCATCGTAGTTTTGTGTTTAGGCAGAAACTTGTATTGTTAAAACTTATATGCATAATGCTTTACTTGTTCTATGCGATCTACAATTTTATAAAAGGATCTCCTTGGATTTTATGGTGCTTTTAGTTTTGATTATTTCCCTTACCGTTTAAGGATTATGGCATCTCTGTTTGTTTCTGAGGCACCTTATAAAGTTCTTTTCTGGTTTTCTTCCTTATTGTCTCGATCATCGAATATCATTCTACTTGTGTATTGATGTGGAATATTACAATGTGGTCCACCACACAAAAGTAACATCCGAGGGGAGTAACAGAATGAGAGGGAATTTAGTGGACAGCTCCAATTTTATTTTTTTTAATTTTTTGGCTTTTCCGTTTTTCATTTTCTAGTACTTTAATACGTGATTCACAAACTCATTGCAGAGACTATTATTTAAGAGA


Gene Sequence:
>Vu_12042(+)
ATGGGTCAAATGACACATGAGATTGATGATACTGTGCATGGTAAGAATCAGACTGGGTCACGGTTGAATGACGGTGGTATTGGAGGAGGTGTTGTTCTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATACGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTATTCAGGACTTTCTCGTTGTGGAAAAAGTTGCAGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATCACTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCACATGTAAGCAGACTGCACAATTTTTGTTGACTTACGTATTTAATTTTGTTTCATTTTGCTATTTCTTTCACTTTTATTTATTTTAAATGTATGAATTCTTTTTGCCATTGATGTCAGTGTTGCGTACGCCATCCTATCTTCAAACAGTGAACATCATATGACAACCATGTCTTCTTTTTTATTGGACTTGTCCCTTACAGTATGAAATCAGCTTGTTAGATTTATGAATTTCAATGCCATTCAATAATATATGTCATCATTATAGTGTGTCAAGGGTTACCCTATTTATCATGATTATATTGTGTCTAGGATTACCCTATTTATCATGATTATATTGTGTCTAGGGTCACCCTATTTATCATGTACTTGTGTATCAATTTATTCTTATAAATAGAAGATTGTGAGAGGGATCAATTAAGCCCTCTAGAATTATTTTACAGTTTCAATCTTAAGTTGGTATCAGAGCGGGAACCGCTCTGGTTTCTGTCTCGTAATATATATCTGTCCGGCGCCACAGTTCTTTGTCGCCCGCCACCGTCCACCGTCGTCCGTCGCCAGCCATCGTCCGGCCATCGTCTGGCCACAGTTGCCGCCGGCCACCGCCCGCCGTTGCTGGCTACCGTCGTCCATCACTGTCACAGGTCTAAACCCTTAGGGTTTTCTTATTCCTCGCTAGTACTATTCGTCTTCTTCAGAAATGGCGTCTGGCAGTACTCTTTCCTTCTCTGGAAGTCCATCAATTACCTCCGAGAAGCTAAATGGAAAAAATTATCTATCATGGTCTGCTTCCGTTGAAATGTGGTTCCTTGGCCAAGGGCATTATGACCACCTTGAGCGAAATGGAAGCCATGTGCCTACTGAAAAAGCTGATAAGTGGAAACAAGAGATTTCCAGTTGTGTGCCCTGTTATGGCAATTAGTGGAACCCAAACTTCTTGTATCTTTGAGGGCTTTCAAAACTTGTCACTCCTTCTGGAAGAAAGCCCAAAGCATTTATGCCAACGACATTCAACGTCTTTATGACACTACGAACAAGCTTGCATCTCTTAAAATGGCAGACCATGATATGCCCAATCTGATGTCGAAGAACTTAGGATGTTTTTGGAAGTAGATCCATTAGAGGATATCAAAAAGAAACTAGACAAATTTTACATGGTGTTGATCCTTCGTGCCCTACATCCTGATTTTGATCATCTCAGAGATCAACTTCTAACTAGTCATGAGGTCCCCTCTATGGAAACATTGACCACTCGCCTTCTGCGTGTCCCGGTATCTCAAACTCAAGAAGCGCATGAACTAGTGGAACCATCTGTCATGGTTGCCACACGAGGAAGAGGAGGACGTGACACTAGAGGAGGAGGACGAGGAGGTCGGGGACGTCTTCAATGCACATACGGGTCATACTCAAGAGAATTGCTAATCCTTACATGGTTTCCTTTCCAAAACCGCCAATATTTCGAAGGCTGAAACTTCCACTTCGAAGACTGAAACCTCCACTTCTATGTTTTCTGAGGATGAATATCAAGAGTATTTAAGGTTAAAGTCTAACAGCTTGACACACTATAATGATGATAAAATAGGATAAATATCCTAACAATATATACACAGTCTAATTGGCATAATATACTTTAGTTGCCATTTAATAATATTCTGAATTTAACATAAAACATTATGCATAACTTTCATTGAATACTGCTAACAGTTAAGTGTGACAAATCTTTGACAGTATACAGCCTTGTAACTTTTTTCTCGATTGTTCTTGACATCATCATGTCTATCTTAGGAATGTAACCAGTATTATGGTACTGTGTTCTTGATGCGACTTGTCTCTGAGCATCTATTTGAATTTTTTTCTGTCTGTAAATCATTTTTAGTTCTCTCTTAGATATGAAGATAGACTAACATATTACTTTATTATCTTAATCATAATTTTAGACCATTAAAGTTAGAAAATAGCACGAAAAGGAAAACTGCTTACGCTTGTTATGAAAAAGGTAACCTATGTCACGTTCTTTTTTTTTGTGCTTGTTTCCTGTCTGATAAAATATGGCACATGGTAATGTGCCAAACTGGGGAAATGAAAGTTACATCCATTTTAAAATGCATTCAGAGTTTTTGAGATTGCATTTATTGCGAACCAACTTGTGTAATTCTTTTCCTTGCATATCGCAAAAGATTGACAGCGAAATTCAGTTTCTTCCTTCCACCACCTTTTCATTGTGTCCAAAGAACCATCATTCTCTCTTTTAAAAAGGATATGTAATCAGTGAGTCTTTGTTTAAGATCACAATGCTGCTGTTGCCAGGGGTGGAAGAGGGAGATTACAATACTGGTATTTCTACCCGACACCACCCACCCAAAGAAAAAGAAATCAGTTAGTGACAGAAAAGATGTGTGAGAGATTAAAGCCAATGAGTAAAAAGAGGAGAGCAATAAAACAAATGAGAACATATTTTTGTCAGAATTAGAAGCTGGAATTACCCCTTACAAATGGAAGAGTATGCTTGCAATCACTGCACACTTAATTTCTTTTTCTGTTATCATTATGATGTATTCATTTTCTCTATCAATGGAGATTTAGAATGATTGATTTCTTTTGTTTTCAGTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCGGAAGTAGTACTGCAAGCATTTCAAGATAATAAGCATGACCAAGGTACTGCTGAAATCAGCGATGGAGATGGAGGCCACCAGGATTTCATGGAGAAAAACAATTACGAGATACATGATGCAATATATGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTCAGCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCTCCATACTGTAATTTCCTGCCATCGACGTTACCTAACCATGATCATCTTCAAGAGTCATCCGTGTCTTTTATTGGTTCCAATGAATTGAACAGTAATGGGTTTTATCCATTTGACCACTTTAAGGATAATACTTCTGATAAGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATCTGTTACAGCCATTCAATATCGAATGACAATTACTCTACTTCTAAGCTAGCTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGATTCTACTGATGTTTTCATCCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCTTCATCACTCACTCGTTGCTTTCTTAATGAATTTCTTTATCAGCAGGCGAAGACTCTTGGTTATTCAAATAATAATTGGCCTGAGAGTTCAAATTCATCCATTGCAACTCCCGTTGATGGAGCTGAGAGTTCAGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCTTCCTTTGGTGCAACTTCAATCCTGAATGAGCATCCTGTTGTTGGCACCAACGGAAAGCCATGGGATGGGTGGGAACCTTTTCAGACCTTTAGTGGTTAGTACCTTCTAATGTGGTATGATAAGGATGATATTTGGAAAGCATTCATTATTTTCTGCACACATCCACATATATCTTTGACACTACAAAACTTATTTAAAAGTAAGATTACCTATTTTACTTAAGAAAGCTTTATTATGTCCTGTCATGCACATTCTGGATCATAAAAATGTTGATTTGTCTTAAATAAATTAAGTAAAAAATTTTATTTCCTCTGAAGTTGTCTCATTGGAAATTGATTATGAATCTTGATGAAAATAAACTCCATGACTTGAAAACTCTACAGGCAACAATGTGAAATTGCAGTCAGTTGATCAGGTTTCGGCTCCTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATCTCACTTGGCCAGATGTCTTGCTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCACAACAATATGAACCAAGCTGATATGATTGATGCTAGTGATAATTTCACGAGACAGTAA