Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12191 LG3 13872070 13877474 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, response to auxin, positive regulation of transcription, DNA-templated, regulation of cell cycle, regulation of cell cycle, positive regulation of cell population proliferation, positive regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, trichome morphogenesis, regulation of transcription by RNA polymerase II, regulation of cell division, positive regulation of meiotic cell cycle, positive regulation of meiotic cell cycle, response to auxin, regulation of transcription by RNA polymerase II, positive regulation of meiotic cell cycle, trichome morphogenesis, trichome morphogenesis
Cellular Component   is active in   RNA polymerase II transcription regulator complex
Cellular Component   located in   nucleus, DRM complex, cytoplasm, nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein binding, protein dimerization activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA binding, protein binding, DNA-binding transcription factor activity, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, protein binding, protein binding, DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding
Pathway   B 09143 Cell growth and death   C 04110 Cell cycle [PATH:ko04110]
SNP Position Effect Amino acid change
G/A 13872075 synonymous_variant p.Ser2Ser
G/A 13872076 missense_variant p.Ala3Thr
G/A 13872081 synonymous_variant p.Pro4Pro
C/T 13872086 missense_variant p.Ala6Val
T/A 13872090 synonymous_variant p.Pro7Pro
C/T 13872093 synonymous_variant p.Ser8Ser
G/C 13872094 missense_variant p.Ala9Pro
C/T 13872095 missense_variant p.Ala9Val
G/C 13872147 missense_variant p.Met26Ile
C/T 13872162 synonymous_variant p.Arg31Arg
T/C 13872168 synonymous_variant p.Leu33Leu
G/A 13872202 missense_variant p.Ala45Thr
T/A 13872296 downstream_gene_variant
T/G 13872384 downstream_gene_variant
C/T 13872622 downstream_gene_variant
C/T 13873036 downstream_gene_variant
T/G 13873296 downstream_gene_variant
A/G 13873341 downstream_gene_variant
G/A 13873346 downstream_gene_variant
G/A 13873621 missense_variant p.Ala73Thr
T/C 13873870 downstream_gene_variant
T/C 13873935 downstream_gene_variant
G/T 13873996 missense_variant p.Met141Ile
C/A 13874260 downstream_gene_variant
C/A 13874398 downstream_gene_variant
A/G 13874455 downstream_gene_variant
T/C 13874481 downstream_gene_variant
T/C 13874595 downstream_gene_variant
C/T 13874606 downstream_gene_variant
T/A 13874608 downstream_gene_variant
T/A 13874741 downstream_gene_variant
T/A 13874742 downstream_gene_variant
T/A 13874764 downstream_gene_variant
G/A,* 13874788 downstream_gene_variant
T/A 13875216 downstream_gene_variant
A/T 13875575 downstream_gene_variant
A/G 13875579 downstream_gene_variant
T/A 13875640 downstream_gene_variant
A/T 13875697 downstream_gene_variant
G/A 13875820 downstream_gene_variant
A/G 13876027 missense_variant p.Glu248Gly
A/G 13876078 downstream_gene_variant
C/T 13876344 synonymous_variant p.Pro291Pro
T/A 13876727 missense_variant p.Val341Asp
G/A 13876763 missense_variant p.Arg353Gln
A/T 13876915 3_prime_UTR_variant
C/T 13876921 3_prime_UTR_variant
G/T 13877058 3_prime_UTR_variant
G/T 13877267 3_prime_UTR_variant
A/G 13877310 3_prime_UTR_variant
T/A 13877351 stop_lost p.Ter416Argext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12191.1
MSAPRAPSAAATATATASSNPPDQIMHTMKRQLPFSSMKPPFAAAGDYHRFAPDHRRSLDAEAVVQLKRKSEAADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQIREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVPKLPSSPDVNKNQSTVVPEDKGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPVVEWNELDPLQEDYCMTRDNTSTPSHPSNVGEVSSTSKPSGG*


CDS Sequence:
>Vu_12191.1
ATGTCGGCACCGCGCGCTCCTTCCGCTGCCGCCACCGCCACCGCCACTGCCTCCTCCAACCCGCCCGATCAGATCATGCACACCATGAAACGCCAACTTCCCTTCTCTTCCATGAAACCACCCTTTGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCACCGCCGAAGCCTCGACGCCGAAGCAGTCGTGCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACACCAGTATCAGGAAAGACAGGAAAAGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGCTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGGCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGAGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCCCATGGCACCACTTTGGAGGTACCCGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTACCGGAGGATAAAGGGAAAGGCGTTGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAAGATTTCGTCAGCGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGATAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA


Promoter Sequence:
>Vu_12191::LG3:13870070-13872070(+)
GCCGGTGATGATTCTAGATGATGGTTTCGCGTGTGCACTCTCTCTCCTTTTTTCTCAATCCGATCCAACCAAATTCTGCTGCTCTAACAACCTGGTCTCCCCCCTTTTCTCTCTCCCAAAATCTTAGAAAAATATTCTCTTGACCACCTGGTCCCCCCTGCTGAGACACACCTCCACACGTGCCCTTTTCCACGTTTTCCATTTTTTTATTTTTATTTTAATTTAATTGTTTTCAGTTTTAATTTTATTTTTTTAATTTTTTTAATTATTAACTCTATTAAAACAAAATTGAAGATAAGAAAAATAGAAATTAAATTAAAAACAAAAAATCTAAATACATAAAAATAGAATAAAACAAAAAGGTAAAATAATAAAAAGGAAAATAATAAATAACCAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTACAACCCGGACAAAATTGAGTGTTGACATTATGAAATATATGCTGATACATGAATTGAATTACACAAGCTTACCCTATTTTCCTGTCTTGTCCGTTTTGTACGTTCGGTTATTGTCATGTCGCAATGATCATCCGTGTGGATGTGAGCAGAAAGAGAAGAGCTGTTGGAAGAAGCGTTGGAAGAAGAAAGTTTGGTCGAGGTAGAAGTTAAGACCAAAATGTAGAACCTTCGGCCAGTAGTTAGTTTATTTGTACGATGACTGTTCGATCATCTTTTACCTTCTTCTTTTGTATGATTGTTTGGTATAGGTCTTTTGTAAACTGTTCGGACTAGATTGCTTATTTGTACAGTTTTAACTTTCTCGTTATTCTATAAGGCCGTTCGGCCATAAGCGCATGTCCTATTTTTTGTAAGACTGATCTGTAGTATTATTAACATGTGATTATTATATTATATGGTTTTATACTGTATTTTTGGGATGTCACATATACTAATCATAAAAATTGATTTTACATTATTATTCAATTATAAATTACTATATGTAATAATGCTATTAACTTTTACTTTAATAATTCTAAAAGTTTACAAATAGTAATTTTTTATTGGTATACCATATACAACAGTTTTACACTATTAATCTGAATATATAATGTTTGAACTTACTTTTTATTTGATTAATTGTCCAAATTTTAACGTTAGTGATATATAGGAATAATGCTTGTAAAATATATACAAAATAGTTGTAATTTATTTTTTTCTTAAAAAAAAAGTTATATATTTATTTTATTTTCGATTTAAGAAAATAGTGGTCGTATAAATGGTGTGCAAGTTCGAAAATAAATATAACAGGTGGTTTGATTTATTTTTAGTGGTATTTATATATTTAATTGTAGATTTTATTATATTGTTTATTATTTTCTTTTGCATTTTGTTAAATTAAAGTCAATTACTTCAGAAGCTCATCCCACTTAGTACATCTCATTTCAATTAGTGAATCTTATGGAATCATTTGTTAAGCTTTAGAGCAATTATTTAAAAACTATTGTTGGTACAGTGATGATGAGTATAATTTTTAGTTAATTATTAAGGTAAAATTGCTTGCATATTCTATACATAAAAATTAAACTCTTTTATTTTCTCTTTAAAATATTGCTTACACTGCATATTAATGATTGTAATGCTCTTTTGTTCCATTAAAAAATAAAATTAAAATATGAATGGATAGATAAAACACAATATTAATAATAACAATAATAATTGATCTGTTTTTCCTCTTTAGTGTGAAAAGAAATAGTAATTATTATGATAATATATATATTATATTTATTTGGGAATTTATTGTAGTAAGTGCTTCCCTCCACATCTATATCCGAACCAAATTCCCTCCCTTCTCTTCATCTTCTTCTTCCTCTCTCTCTTTTTTCTCTTTCCCTCGTTTTCTCCTCTCTTTCTCTCTCCCGCTTTATTATTTTCCCACTCAACAAACTCTCAGATCTTTGTTTCCTCTCCCATTCCTTTCGATTCCCCCAATTCTAACTCCCAAACCCCACCGATCCCCCTTCCTTGCGGCGGA


Gene Sequence:
>Vu_12191(+)
ATGTCGGCACCGCGCGCTCCTTCCGCTGCCGCCACCGCCACCGCCACTGCCTCCTCCAACCCGCCCGATCAGATCATGCACACCATGAAACGCCAACTTCCCTTCTCTTCCATGAAACCACCCTTTGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCACCGCCGAAGCCTCGACGCCGAAGCAGTCGTGGTCAAGACTCCTGTCGGTGCTTCCCTAATTTTGTTTTTCATTTTTAGGTTTTTTATTATTTTTTTGGCTGTTGAGTTGTTAGAGTGGGTTATGTGGTCGGGTGTTCGTGATGGCTCGGATAATTGTTTGAGAACTAGAGATCTGCTCAATTCAAGGGCTTAATTAGTTAGTGAGTTGTTAATTTGTTGGTGTTAGTCGCTGAATCAGTTTATAGGTGACACTAGAGCTAGATTGTAACTTGGAGATTGTTAAGTGGTAGTTGAGATTGAATTTTGATTTCCCAAGTTAAGGTGCTTGAGAGTTGGAAATATAATGTGCTCGGGACTTGTTTTTATACAGGGTATGGAATTGATTGGTCAATATCTTGTATAGAAGGTTATAATTTATAAACTGTTCTATCTGTTTAGTCTCTTTGGTGATATTAAGTTCTTGAGTTTGTGACTAGAGCAGTGAGGAACTTGAGAGGATGTGTTTGCTGATTATAAATTGAGTTGGCAGTGTGATTGTAAATTGGTCAAATTTTTCGAGGAAGTGGTAGGGCTATTTATTTGTTGTATTAGCCGCTTTGAAGTACTTCTGGACAGTCCCATTGACATCATGTGAAATTATGTATATACTCTTTTAACTTTGGCAGTGTGATTGTAAATTGGTCAAAAATTTTGAGGAAGTGGTAGGGCTAGTTATTTGTTGTATTAGCCGCATTGAAGTACTTCTGGACAGTCCCATTGACATCATGTGAAATTATGTATATACTCTTTTAACTTTCGTCTGCTTATGTTTTATTTGGATCATTTTACTCAACCTAAAATTGAATCTGGAGGCTGCCAAATTCATAGGTTTTGGGCATTTGATTTGACCACAGATCAATTACTTCATCCATACGTTCCTAGTCTAGGAGTTCTGAGTGTTTGTAACCTACTTTTAGGAGTATCTTTCATACTTTCATATTAAATCAATTGTACATATTTGTGCATGTGTCATGTCTAGTCCTTCTGTTCTTGGGGCTCTTTGGAAAAAGATTTCCAATTTATTGTTTGACTTTATATGATTACAAACTAGAAATGGATTAGGTAGTGATCATGTGAAAGAATGAATTATGCATAATCTTGTGATGAACATCTCTATAATAGTAGAGTTATTATTTTATTTTCCTTTATGAACATTCTAATTAATATTGCTTTGCAATTATTGCTTGCATGCTTTGGACCAAATATAGATTGTCTATTATGGATTATAAAGTATGTGAATTATTTGTGAAAATGTAATTCTTACTATTCTAATTTCTCCTGTTTTGTCATTTCTATTGATTGCAATGATTATATTTTCACATTTCAGCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACACCAGTATCAGGAAAGACAGGAAAAGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTGAATATCATCTTCCAAACATTATGTTTTTATTTTTAACAGATATCCCTAGAAAATGCTGGTAAATCATATTTTGGTTGTCTGTCAACTAACATACACCATCATTACTTACCTGTGTTAGGCATGCAAAAAACTTAGATACTTTTTTTTTTATGTAAACTTGGCAGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTATTATAGCTTTTGGCAGTTCATTGTTGATCATCAAGGTTTTATAATTATTCAATTTTATATGGTGCATTATTACCCTTTGGTCCTTTGTAGTTTCATTCTTTCTCATTTAGTGGCCTCAACTTTCATTGTGTATTAAACTCTCTCAACAACTTGTAGTTTATAGACAAATTTTTACAATCAGCATTTACATGTTTATTTTACTCATTATTTAATTCTGGTTTAATATTTTCACAATGTACCCTCTAAAGTTATTGTTTAGCTCATGCATTACCTTCTTGGAAATAGAAGTCACTCTAGTGGGTCCAAAAGGATGGGTAAAGAACAACTCAAAACCAAACTGAATTTCAAACTTAACTGAACCACACCTAGAAGAACCAACTTGTATTTAGATTTCTAATAGTCTAACCAATTTCTGTCTAAAAAGCTGTTAAGATAACCACTTTCAAATCTAATTCAGTTAATCAGATTTAACTAATCTATGTTATTTCGTTCACCCAACTCATGTAGAAGCTGATCTACTCCTAAAGCTCTTTATTCCTCTGCCACTACCAAGTACCAACAGAGGCACAGTCTGCTCTGTTACCCTCTTGCCATTGCTATCTTTCATATTGAAGCACATTTAATAACATGCGATCCATCAACATGATTGTTATGCTACATAAAGGATCACACTCTTCTTCGTTAGTTGATGAACTGGTTAACCAAATGACAAAAAATGGTTTTAATTACAGTTTGAAGAGCTGGTTTTTAAATGTGGCGTGGTTCGTAGACTGATTCTTTAATTAGTTTTTATTACAGTTTGGTTAAGTCTTCTTAATCAAACCAACCGGCCATGTCTTAGATGGATAGGATGAGTAAATGTTAAATTGACATTGAAGTTAACTGAAGCTAATATTTTCAAGTTAAACTAAAGCTGAGGAGATTTCAGTTACAAAAATAGTCGGGGTTTGTCTGAAAATGGTGAAACTACTGTTAGATTAAGTGTAATTTTCCCTTTGTTCAGTATGTTTTCAGTGACAAAAGGAAGTTGCTATACTCTTTTTTAATTACTGCATATATCATTTTCGTAAAAAATAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTTAATATATTTTCATATGGTCTAGTGATTGCATGCTGTAAAGTTTGATAATTTGATGTTCCTTTTTTTGTAACTACAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGTAGGAATTTCTATTCGTCAATCCTTGTCATAATTGTTGAGGTATTGAAGTTTTAAACTATTTTACTGACTCCTTTGACAAATGTTGATCAGGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGCTTACAGGTTAGAAAAAATTCAATTTTCTGCTTGGGATTGACATGGAGATGGTTTCTTTAGATTGGAACATATAAAGCTTGATTATGTATTCAATTTATGGTTTCCTGTCAAGAAACTTTCATTTTTTTTTTCATCTGGAGGTAGCTGTTGTCAAATCATTTTATGTGAGATTGCCTGTGAAACATTTTTATTTTTATTGAAACAAATTACAGACCTTCTCTGACTTGAATTTCAGTAAGTTGCTTTGCAATGGGTATTGGGATTGAATTTTTGTATAATTTATTTTATATTATACTTCACAGATAATATTAATTCCTGAAATTTTGTTGGCATTTGATTTCCTTCTGTTTCTCATCTGCAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGGCGGTTAGATGAACAAATAAGGTTTGGAGACCATCCATGGCAATTTTATCTTCATTGGCTTATTCATCTATAATGTTTGGGGACCATGCCTGGACTACTGAAGTTTTCTAATTAATTGCAGGGAGATGCAAGAAAGACTGCGAGAGCTCAGTGAAGATGAAAACAATGAGAGGTAATATTCATTTTGCCTTTAATCATCTGTGTTATTTGGCGGTCATTTTGTGTGCATAACTATATTTGATGTGTTTCTTTAATCTATCTCCACATGCATAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGGTAAATTTCTTCGTCTATGTTCTTTGCGTCACAATATAAATTTTGGTTTTGGATGTTTACTGAAATCTTAGTCTTTACTGCCAGAATGAGACCTTGATAGCAATTAAAGCACCCCATGGCACCACTTTGGAGGTACCCGATCCTGACGAGGTAATTTGAGAGGGCATGAAGATTTAAATAGAAGTTAATAAATATCACTTGCATTTTTCTCATGGTAAATCCCCCTTTTCTATTAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGGTATTTTTTGTATGATTCGAAAATCAGTTTCCTCAAGTTTATTGCAATGGCATGGTCAGATGACAGTGCAGGATGAGGCTATAATGCTTCTCATGTAACATGTAATAGTTAGATTCCTGACCTCCCCTTCTTTCTCTGTCTTTTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTACCGGAGGATAAAGGGAAAGGCGTTGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAAGATTTCGTCAGCGGGATCATGAAGATTGTTCCTTCAGATGTTGCTGTGAGTATCACCTCTTTGAGACATTTTGTTTTTCATATTTCGGTTCTAATGCGAGAATACATTTATGGCAACACTGTCTCAGCTGTGGGGGATTATCTTTCAAAATTCTGCACACATCTATGATTGCATATTTTGTATGAATTTTTGCAATGTTTCTTTGTTGTAACTTGTAAGCACGAAGTCAGTATCGTTTCTGATAAAAGAAATAAAAGCTCAAGTGTAGGAGCTTATTTGAAACTTTTTTCCCTTTGCAGAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACGTATCCTCCCTAAACTTATCCTCCATTTATTCTTTAGATACGTCATGCACCCACACACCTGGAGGGGAGGGGTTTGGGATTTTCACAAAAAAATAGGATTCAGGCTTGATGATATTCTAAAGCTTCATTGTTACATTTACAGCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGATAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA