Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12290 LG3 15012410 15015275 PREDICTED: histone deacetylase HDT1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to cold, response to water deprivation, negative regulation of transcription, DNA-templated, response to water deprivation, response to water deprivation, negative regulation of transcription, DNA-templated, seed dormancy process, negative regulation of transcription, DNA-templated, seed dormancy process, seed dormancy process, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, response to salt stress, seed dormancy process, response to abscisic acid, response to salt stress, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, response to abscisic acid, response to cold, negative regulation of transcription, DNA-templated
Cellular Component   is active in   nucleolus
Cellular Component   located in   nucleolus, plasma membrane, nucleolus, nucleus
Molecular Function   enables   protein binding, protein binding, histone deacetylase activity, transcription cis-regulatory region binding, protein binding, histone deacetylase activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/C 15012421 5_prime_UTR_variant
A/T 15012428 5_prime_UTR_variant
C/A 15012540 5_prime_UTR_variant
C/T 15012636 intron_variant
G/T 15012648 intron_variant
T/C 15012657 intron_variant
T/C 15012759 intron_variant
T/C 15013121 intron_variant
T/A 15013123 intron_variant
C/T 15013133 intron_variant
G/T 15013138 intron_variant
G/A 15013182 intron_variant
C/T 15013211 intron_variant
G/C 15013235 intron_variant
T/A 15013238 intron_variant
A/G 15013240 intron_variant
T/C 15013254 intron_variant
T/C 15013256 intron_variant
T/G 15013355 intron_variant
T/A 15013369 intron_variant
C/G 15013435 intron_variant
G/C 15013604 intron_variant
A/G 15013605 intron_variant
A/G 15013640 synonymous_variant p.Glu116Glu
A/G 15013731 intron_variant
A/T 15013809 missense_variant p.Lys145Asn
T/C 15013816 missense_variant p.Ser148Pro
A/C 15013824 missense_variant p.Lys150Asn
A/G 15013862 missense_variant p.Lys163Arg
A/G 15013906 missense_variant p.Thr178Ala
T/G 15013983 intron_variant
C/T 15014022 intron_variant
G/T 15014148 intron_variant
A/T 15014154 intron_variant
T/C 15014162 intron_variant
T/A 15014295 intron_variant
C/T 15014321 intron_variant
A/G 15014363 intron_variant
A/T 15014387 splice_region_variant&intron_variant
A/C 15014455 missense_variant p.Thr229Pro
T/G 15014463 synonymous_variant p.Thr231Thr
C/T 15014504 intron_variant
T/C 15014579 intron_variant
T/C 15014698 synonymous_variant p.Thr245Thr
C/A 15014706 missense_variant p.Pro248His
C/G 15014868 intron_variant
C/G 15015025 3_prime_UTR_variant
C/G 15015107 3_prime_UTR_variant
C/G 15015170 3_prime_UTR_variant
T/A 15015179 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12290.1
MDSPMEFWGVEVKVGQNVKVDPMDPVSAYIHISQVALGEAKKEKANEPVVVYLKVGDQKIVLGTLKKDDIPHLSLDLVLDSDSELSHSSKSASVFFCGYKVLTDDGNISDFSDSEEEEEALPLKGQDNGKPVTKAEGAKVTKPSKPASVKGASVKQIKTVDPKKEDDSDSDESDDELTGNDESDSDEMDDGSDSDEESESEEETPAKKGKKRQNESASKTPISSKKAKTATPEKTDGKKSVHVATPYPMKKGGKTPKNVTKVQSPTSAGQLSCGSCKKNFANEDGLQQHKKAKHGGQ*


CDS Sequence:
>Vu_12290.1
ATGGACTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAAATGTGAAGGTTGATCCCATGGATCCAGTGAGTGCGTATATACACATTTCTCAGGTTGCCCTTGGAGAGGCGAAAAAGGAAAAGGCAAATGAACCTGTGGTTGTGTACTTGAAAGTTGGTGATCAGAAGATTGTTTTGGGAACCCTTAAAAAGGATGATATCCCTCACCTTTCGTTGGATTTGGTTCTCGACTCTGATTCTGAGCTTTCGCACTCTTCGAAAAGTGCCAGTGTATTTTTTTGTGGATACAAAGTTCTGACGGACGACGGTAACATTTCTGACTTTTCTGATAGTGAAGAAGAGGAGGAGGCTCTTCCCTTGAAAGGTCAAGATAATGGGAAGCCTGTAACAAAAGCTGAAGGAGCAAAGGTTACCAAGCCCTCTAAACCTGCTTCCGTGAAAGGTGCATCTGTAAAACAAATAAAGACTGTTGATCCAAAGAAAGAGGATGATTCTGATTCTGACGAATCTGACGATGAGCTTACTGGTAATGATGAATCTGATTCTGACGAGATGGATGATGGTAGCGATAGTGATGAGGAGAGTGAAAGTGAGGAAGAGACCCCTGCGAAGAAGGGAAAGAAGAGACAAAATGAGTCTGCCTCAAAAACTCCAATCTCTTCCAAGAAAGCTAAAACTGCTACTCCTGAGAAGACTGATGGTAAAAAAAGTGTACATGTAGCAACTCCCTATCCTATGAAGAAAGGTGGAAAGACTCCCAAAAACGTCACAAAAGTGCAGTCTCCCACTTCTGCTGGACAACTATCTTGCGGATCTTGTAAAAAGAATTTTGCCAACGAAGATGGGTTGCAACAACATAAGAAGGCCAAGCATGGTGGTCAGTGA


Promoter Sequence:
>Vu_12290::LG3:15010410-15012410(+)
ATCTCTGATTCATAACTTATGTGATGTGTATTTTCGATTAACAAAACTTGTTTTTTTTAAATTTTAATAATTATTAAATTTAATTTAATATTTTAATATAATTTAATATATTTAAATATATTAAATATGGTTTTAAGTATTATTTTTATTTTAGTTATTACTTTTTAATTTTTTTAATAGAACTATTTTAAAAATATAAATCATATTTTATTAATTATTAAAATATAAAAATATAATAAATAATACTATAATTTTTATTTAAGTTTAATATTTATTAAATTTTAAATAAAAATAAAAGTATTAACATATTTTACAGATTTTAATATATAAATAAGTTTTTTAAAATTTTCATTTTTATTTAAAATTTAATAATTATTTAATTTATTTTAATATTCTATTATAATTTAATATATTTGAATATATTAAATCAAATTTATTATTATTATTATTTTTATTATTTTATTTTTATGTTTTTAATATAATAATTATTATAATATAAATTATATTTTAATAATTATTAAAATACAAAATTATTTTAAATAATATTTAAATTTTAAATTAAATTAAATTATTATTAAACTGATGAAGATTGTTTTTAATAAAAAAGAAAAGAAAATGGATAAATATTTATTTAAGTTAGAAATAAAAGTTTTGAAAAAGTTGAAAGTGTATAATGAAATGTGAGAAGGTTAAAAGTGGAATTTTTGAAGATAGGGTATAAAATCTTGTAGGTGTAGATGAAATACTCTTGTTGAAAACACAACAGAAAGTGAATCAAAACAATTAGGCTATTTCTTCCTTCACCCCAGAATTACTAATTACATCTATACACTCCTGTCACCACTACCTCATTATTTCCATCATCCCAAATACTACAGAGTAAAAAAAACTCATTTTGAAAAACTCTATCTAAAAAATATTTCATGTATTTAAATTTTTTATTTCAAAAGCTTTATTTCAGAAGATATTATATACGTTCAAGAAAAAAAGTCCTCTTTTACAAAAATTATTCAAAAATACATTTAATGTGTTTCAAAAATCTTGTTTCAGAAATATCATCCTGAAAATCTTACTCTGGAAATATCAGAAATCTTTTCTATAAATTTTCCAAAATATATGATTTGTAGGTTAATTTTACAAAATGTGAAACAATCATTTTAATAGTTTAGAGGTGCGTGAAAGAAGGTATGGGAGTGCAGGTAGTAAAAGCTGACCGATATTGGAAAGATATGATAATGAAAGCCCATCATAGTATAGTATTTTCGACAGCCCAAACTATTTATGGTATCAATTGTGCTTAAACGAAGTCCTAAAAATTTGGTCTAATAGGAAGTTATTTCTATTTTGTTAGGTTTTAATGTTCGTAGTGTTTTTCTTCTTATTTTTACACAAGTAAATACGCCAGCTTTTTCCCATTTAATTTATCCAAAACTATATTTAATTGAATTTATAAAAAAAATTCTTTTTTCTATTTTTAAAAACTTTTAGATAAAATTTTCCAAACATATATTTCAATTTTCAATAAATTTATTAAATTTTGGATTATGATCCATTAGCCAAATTCTGTTTGAATAACAAATTATCGAAACAAACTTTTCCATAAAGTAAATTCAACTTATGAACACAAAAGTGTTATAATTTATTCACTCTTGTTTAGATTTCATAGCCCTCGTGTTAATTTAAGAATGTCAAAGATTGTAATTAATAAAAAAACTCTATACTAATTTTAAATAACCGTAATTACCTTAATTTTAAAATAGCAACAATTACGTTAATCAAAACACACAGATATAGTAAAAGATAATAATAATTATAAAATAATAATAATATTGATTGATTAGCTAAGTTTAATCTATAATTGTGCTTTAAAACAAAGATCATGCTCAATATAAAAAAGAGTAAACAAAATATTTCAGACAAAACAAAACAAATGCTAAATTAATATATTAAATAATAATAATAATAAATATATATAAAACTAATCGGACAATTTCTTTTCA


Gene Sequence:
>Vu_12290(+)
AAGAGAAAAAAAAAGAAAAAGGAAGAAGAAAGAGGCGCGGAGAACTTCAAAAACCCTAACGAGTTGCATAAAGCACTATATATACATTTCTTAAACCCTCACATCCATTTCTCTCAATTCAATTTCTCTTCCTCCTTTTTCCCCTTAGCTTTTCTCTTCGGTACCTGCAAATGGACTCACCAATGGAGTTTTGGGGTAACTTTTTCTCTTCTTTTTTTCTTTATTTCATTTTTTTTCCGTCATTTCTTGCAATATCCTAAGTTGATCGATTCTTCTTCAAACTGTCGGATCACAGTTTCATGTGCTAATGTTTATGTATGTTTTTTGCGGAATCGGTGAATGATTTTGGTGATGTGATCTTAATGTTATGTCTTGGTTTGAAATTTAGGTGTTGAGGTTAAGGTTGGGCAAAATGTGAAGGTTGATCCCATGGATCCAGTGAGTGCGTATATACACATTTCTCAGGTTGCCCTTGGAGAGGCGAAAAAGGAAAAGGCAAATGAACCTGTGGTTGTGTACTTGAAAGTTGGTGATCAGAAGATTGTTTTGGGAACCCTTAAAAAGGATGATATCCCTCACCTTTCGTTGGATTTGGTTCTCGACTCTGATTCTGAGCTTTCGCACTCTTCGAAAAGTGCCAGTGTATTTTTTTGTGGATACAAAGTTCTGACGTATCCTTCCTTCATATTACACTCTCGATTCATTACTATATATTGTTATTTTCTAGAGAAAGTAACGCTTTATATTCTAAATGTTTTGTGTGAAGGTTCTTGAAAGGGTTAGTGGTCACTACTTGTCTTTCGATTTTTTTTTTACTTACTGTGGGTGTGATTGCAATTGTCGCTGTAATAGACCTAATTTGTCTGCAATTTTCTGCAATATCAATGAATGTCAAGAAATTTTGACAGCAAAGATAATTTAAAACCTTGGTTCTGGACCTATTTTTTTGATGTTTATGGTTTATTTAAATTTCTTACTGTAATGGCGGTATGGTCGTGGCATTGAGATAAGGATTTTATTTTTACCAAAATAGAATTCATTTACATACCTGCTTCATCTTTCACTTTTCCTTAACTTATGTGTTGCTGTGGCATTAGGGACGACGGTAACATTTCTGACTTTTCTGGTGAGGATCAACTGTATCTCTGTAACCTGGTATTACTGTTCTGTTATATAATTTGTTTGCTAAAGCATGATTTTATTTTGTGAAATTTGAGTAGATAGTGAAGAAGAGGAGGAGGCTCTTCCCTTGAAAGGTCAAGATAATGGTAAATTCTTCCTCTGTATGGGAAATATGTTGTTTAATTGTGTGTATTAGTATATAGATAGCTAATAGTTATATTCTTTTAGGGAAGCCTGTAACAAAAGCTGAAGGAGCAAAGGTTACCAAGCCCTCTAAACCTGCTTCCGTGAAAGGTGCATCTGTAAAACAAATAAAGACTGTTGATCCAAAGAAAGAGGATGATTCTGATTCTGACGAATCTGACGATGAGCTTACTGGTAATGATGAATCTGATTCTGACGAGGTATGTTGGTCACCAATGGTTTAAATTAAAGTTTTATGTACTCTATTTTATTTGAGATATCAAGATGTGTTATTTTTAAATCCAAACTTACAGCATAAGGTAATGCTTCCAAAGAATGATTTCCTTCCAAAGATTTCTTCATAGCACCTTAATGTTTTTGCAAGTCTTGTTTAAGTAAATACTTTTTTGTCTTTATGGAAATAATGTCTTGTGTTTTCATACCCGTTTGTGATAATTTTCCATCTTTGAAAATTGTAGATGGATGATGGTAGCGATAGTGATGAGGAGAGTGAAAGTGAGGAAGAGACCCCTGCGAAGAAGGTAAGATATTTATTTCTGCTGTAACATGTATATATTTTTTATTTGTCACAAAATATACTGTCTTCAATTATAATGGAAGAGTTTCTAAACAACTTCACCATATCTTAGATGTGACTTTTTCTTATGAATAATGATCAGGGAAAGAAGAGACAAAATGAGTCTGCCTCAAAAACTCCAATCTCTTCCAAGAAAGCTAAAACTGCTACTCCTGAGAAGACTGGTATCATATTCACATATTTCTTTTTCACATATGTCTACTATACCGTATACCAGTGCATCTTAAATTAGTGTTATTGATTAATGCATTTCAATTCAAGTTGTATGAGGCATATAGCGAAGTATCCAAGTTATAAATGCTTATAGTAATTGTTGTACACTGACTGGTAATATTCTGATAAAAAAATTTCTTGTAGATGGTAAAAAAAGTGTACATGTAGCAACTCCCTATCCTATGAAGAAAGGTGGAAAGACTCCCAAAAACGTCACAAAAGTGCAGTCTCCCACTTCTGCTGGACAACTATCTTGCGGATCTTGTAAAAAGTACGATTGTATTTTAAAAAATAGCACTAGACCTTGAAGAATAATAGCTTTACGAGCTTTATATAATATATCTTGTGCTTAATTATTTTATGGTTTTGTAGGAATTTTGCCAACGAAGATGGGTTGCAACAACATAAGAAGGCCAAGCATGGTGGTCAGTGATATTGCATTTTAGCGTACTCAAGTAGTAATTTTCCCTTGTATTACTGTGAGTAGTTTCAGTTCGTTCGAATTTTTATCTCAAGGGCTGGGAAACCTTTGTTTAAATATGAACGCAAGGTGTGGATTTTTCTTTTTGATATCGATGAGGCCTATATGATGGATCTGCTCTTTTCAAATCCTCTTTTTTATCATTCTACTCTGTTTTTGTTGGCTGCTATCCTTTCCAAGTGTTGCAATCTCACTTTATTCTAGAATTCATTTAGATGGTGAGATTCTTATGCAATGATAATTTAATTGCAAGAAAATGCTTTCCTATC