Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12320	LG3	15403228	15404349	PREDICTED: zinc finger protein 273	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	response to acidic pH, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to aluminum ion, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	protein binding, protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/T	15403534	synonymous_variant	p.Ser272Ser
T/C	15403607	missense_variant	p.Asn248Ser
T/C	15403663	synonymous_variant	p.Lys229Lys
C/T	15403671	missense_variant	p.Gly227Arg
T/A	15403673	missense_variant	p.Lys226Ile
T/C	15403749	missense_variant	p.Arg201Gly
T/A	15403778	missense_variant	p.Lys191Met
T/C	15403808	missense_variant	p.Asn181Ser
G/C	15403813	missense_variant	p.Ser179Arg
G/A	15403876	synonymous_variant	p.Ile158Ile
G/A	15403900	synonymous_variant	p.Ser150Ser
G/C	15404137	missense_variant	p.Asn71Lys
C/T	15404144	missense_variant	p.Arg69Gln
G/T	15404220	missense_variant	p.Leu44Ile
G/T	15404249	missense_variant	p.Ser34Tyr
C/G	15404317	missense_variant	p.Lys11Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12320.1

MMPKATSYSTKDFQASQMFPVNEYLASSSVELSSSSTSHSSTSLLCYLSLLKDKLGQLQNLVDVLVTPRHNLTPMAISTMNATLEEIIVAATSMRFTCQQMTLGSSSGTSIANELHRNQNQQQLDHGSVLSPHHPSNFGNNNRGMLSMSSINMSSYMIRGQSKFLSGIEGGALDWFGESYNNNNIGDCNIKDEEADRNIMRESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTNAALSNPMKSRESLLGEGSSSKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDAKWQCSCGTTFSRKDKLMGHVALFVGHTPAIHGFSTYVR*

CDS Sequence:
>Vu_12320.1

ATGATGCCAAAGGCTACATCTTACTCCACAAAGGATTTTCAAGCATCTCAAATGTTTCCTGTGAATGAATATTTGGCTTCATCTTCTGTTGAACTAAGTTCTTCCTCAACTTCACACTCTTCTACCTCCCTCCTCTGCTATCTCTCTCTTCTGAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTTGATGTTCTTGTCACCCCTCGACATAACCTAACTCCCATGGCAATCTCCACCATGAACGCAACACTCGAAGAAATCATAGTGGCAGCCACATCAATGAGATTTACCTGTCAGCAAATGACTCTTGGTTCCTCTTCAGGTACTAGTATTGCTAATGAATTGCACCGAAACCAGAACCAGCAACAACTTGATCATGGTAGCGTATTATCACCTCATCATCCATCAAACTTTGGCAACAACAATAGGGGTATGCTTAGTATGAGTAGCATTAACATGAGCTCTTATATGATCAGAGGGCAAAGTAAATTCCTATCTGGTATAGAAGGAGGGGCACTGGATTGGTTTGGTGAAAGCTACAACAATAACAATATTGGAGATTGTAACATTAAGGATGAAGAAGCCGACAGGAACATCATGAGAGAGAGTGATATAATCGAATTGGATGCTGCTGATTTGTTGGCCAAGTACTCTTATTTTTGCCAAGTGTGTGGGAAAGGGTTCAAACGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAAATGCAGCCTTGAGCAACCCAATGAAAAGCAGGGAGAGTTTATTGGGTGAGGGAAGTTCCAGCAAGAAATATTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAACATGCAAAGTTCCAGCCATTGAAGTCAATGATCTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAGCAGTTTTCGGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACGCCAAGTGGCAGTGCTCCTGTGGGACAACATTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGACACACCCCAGCTATTCATGGCTTCTCGACATATGTTCGATGA

Promoter Sequence:
>Vu_12320::LG3:15404349-15406349(-)

TTATGAAAGTAATGTAAACAATTTTAACAAAAAAATGTGTGGAATGTTTTTCATGTGACACTCAAACTGTATAATAAACTATAATATAACATTCATTATATCATTTGCTATAAAAGATATTTTACGTAATTTTTCTTAAAATACAAGAATAATATATATATATATATATATATAGTTTAGAAAAAATATTTTTTTTAAATAATTTGAAAACAAAAATTATATTTAATTTCAAACAATTATATAAAAAACGACAATTTAATACACAATTGACTCCTTTGAATTTCATTATTTTTTGTTGGAACAAACCAAAATCCCCCACGTGCATTTACCATTGTTTAAGTTTAAGATTTAGGGTTTACAAAACTCAAAACCCTAAATCATAAATCACAAACCCATTTGGTTATACATCATCAAAAGAATAGATTATTTCAAAAATTACTTAAAGAAATTTACCATTGTTCTTAATAAAAAAAATAGTGGAAAAAGTATCTTTTACATTAGACCATCGTGTACAAAGGCAATATAAAAGACAAAGAATAAATGAATAAAAATACAATCACATACTAATGACTTGTAGTACTTGAACAAAATGAATGGACGCTGACAAGAACAAAGATTGTCATTGCGAACCCTTCAAACCTTGTGCTTATTGACAACACAACCTAAAAGGACAATTAGGTTTAGATAATAAGACAAAAGAAAATACTTTTTTAAATTAAAAAGGATAGAAGAACTCAAAGCATTTAATTTTTATAATAATCAACGTGAAAAAAAAAATAGAATGATGAGAGAGTCCGATGAAAGTTGTAAGTTCTGTAACCAATGGAAATTGGATTATCTCTCATTTGCCATGGTTGATGTGAGATAGGGTTCATGTGAGGAAGGTCTTAAGTGGGGATGAGTATATATATATATTGTCTGTCTCAATTCTCAGTTGACTTATTGTCTACATTTAAAAAACGAAAATTCCAAAAAAAATTGAAAAAACCAAACACTTTAAAATTTAAGCTAAAATTGTTATTTTACTTTAAAAGATATTTGGAAATTCAAAATTGGAGAAAAACACATTTTATATATAGCTTGAAGAGGTTAATGTTGTGTATGTTATAAAGACATGTCTATTTCTTATTTTATCCTACGTGAGACTTTGTTTGTATCCAACATCCACCCTTCAAAAACACTGATAAGATATTATCCGCTTTGGACCAAACCCTCACGGATTTGCTTTTGGTATCACTACAAAAAGAGGTATCTTATGTGTATATAAACTCATGTTTATTTCTTATTCTATCTAATGCGGGACGTTGTTTATACCCAACACTTAAAGCTAGTCAGGTTTTATGTCTTTAAAATTCATCCCTTTATACACAATTTCTTTATTTTATCCATAATTGAACGTGAATAACCCAAAGTTAATCAGTTTTATACAAGTTAAAATATAAAAAATTAATTATTGATGGAAAAATCCAATACATTTATTAAAAAAACTAATTTTCGGTAAAAATAAATTTATATTTTTACTAAAGAAATTTCTTTTTTAACATTAATTAATAACATTTTTTTCTATCTCTTTTTTTATCCACATAAATCTGATGTTTATCTTCAACATTTACCATTTTAAACTCCAAAACCTATCATATATAAAGATCTTAATTACCACTAATTTATTTATTTAAATTTCAATTCCAAAACAAGTAATTTATATTAATAAAATGTATTAATTAAAAAGCTAGAGGGTGTTGTATATATAAAGGGGGTAAACTCAGTATTGTGTAGAGAATCTGTAACCATCCATAAGTCATACATAACATAGAAAAATACAAATTATTATGATCATTATTTGGCTGCTCTTCACTTTATATATAAAGAACGTTCCCTCCACAACATTATATCCTTCTCTGTATGATCCAAGTCAAAAGCCAATCTTCACACGAAAACTAAGATTTGAAACCATACAGCTACCATTTTCACAGGTTTGTTGCAGGAAGATTGATTCAACA

Gene Sequence:

>Vu_12320(-)