Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12323 LG3 15437796 15443041 PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   removal of superoxide radicals, cellular response to oxidative stress, cellular response to UV-B, response to salt stress, cellular response to oxidative stress, cellular response to sucrose stimulus, removal of superoxide radicals, removal of superoxide radicals, removal of superoxide radicals, cellular response to salt stress, removal of superoxide radicals, response to light stimulus, cellular response to sucrose stimulus, response to oxidative stress, cellular response to oxidative stress, response to iron ion, response to salt stress, cellular response to salt stress, cellular response to salt stress, response to copper ion, miRNA-mediated gene silencing, removal of superoxide radicals, cellular response to light intensity, removal of superoxide radicals, cellular response to ozone, removal of superoxide radicals, miRNA-mediated gene silencing, cellular response to salt stress, cellular response to ozone, cellular response to UV-B, cellular response to UV-B, cellular response to light intensity, cellular response to ozone, cellular response to light intensity
Cellular Component   located in   thylakoid, chloroplast stroma, chloroplast, chloroplast, chloroplast, apoplast, chloroplast, chloroplast stroma, chloroplast stroma, chloroplast stroma
Molecular Function   enables   superoxide dismutase activity, copper ion binding, superoxide dismutase activity
Pathway   B 09141 Transport and catabolism   C 04146 Peroxisome [PATH:ko04146]
SNP Position Effect Amino acid change
A/T 15437811 missense_variant p.Phe509Ile
C/T 15437812 stop_gained p.Trp508*
G/T 15437903 intron_variant
A/C 15437907 intron_variant
T/C 15437928 intron_variant
A/T 15437939 intron_variant
T/A 15438147 intron_variant
G/A 15438178 intron_variant
A/T 15438399 intron_variant
A/C 15438659 intron_variant
T/G 15438660 intron_variant
G/A 15438687 intron_variant
C/G 15438765 intron_variant
C/A 15438786 intron_variant
A/T 15438820 intron_variant
A/G 15438925 missense_variant p.Val471Ala
C/T 15439374 intron_variant
T/A 15439548 intron_variant
G/A 15439755 intron_variant
T/A 15439812 intron_variant
G/A 15439880 intron_variant
G/A 15440265 intron_variant
A/C 15440266 intron_variant
T/A 15440267 intron_variant
C/A 15440432 intron_variant
A/G 15440757 synonymous_variant p.Leu308Leu
A/T 15440833 upstream_gene_variant
T/A 15441258 upstream_gene_variant
T/A 15441260 upstream_gene_variant
A/G 15441354 upstream_gene_variant
C/G 15441540 upstream_gene_variant
T/C 15441746 upstream_gene_variant
C/T 15441837 missense_variant p.Ser293Asn
A/T 15441883 upstream_gene_variant
C/T 15441884 upstream_gene_variant
A/G 15441916 upstream_gene_variant
G/T 15441947 upstream_gene_variant
C/A 15441953 upstream_gene_variant
G/A 15442123 missense_variant p.Ala231Val
C/T 15442124 missense_variant p.Ala231Thr
A/T 15442125 missense_variant p.Asp230Glu
T/G 15442181 upstream_gene_variant
G/A 15442208 upstream_gene_variant
C/T 15442221 upstream_gene_variant
T/C 15442746 missense_variant p.Glu99Gly
C/T 15442755 missense_variant p.Gly96Glu
A/T 15442796 missense_variant p.Asn82Lys
T/A 15442799 synonymous_variant p.Ser81Ser
C/G 15442897 missense_variant p.Glu49Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12323.1
MDKSYLHQETLLHIDDFELHDFDEDPNLDHLINFIRLEKKDATCDFNSELINEAFIDNSFLPHPAIPYDQCNSNAMNVYDSNSAPNSSCFDGEAKGGGEEEDDMEHSYATTSTTTTTPTKSKPKTDRSKTLISERRRRDRMKEKLYALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKAEVEALETSLLLSKNYQGSVENPMKDEFTNNILSIRKKIIQMDMFQVDAKGFYVKIVCNKGEGVAASLYKALESLTGFHVQNSNLSTVGNSFQLTFSLNVKISEPEINLHSMRIWHYHKHLNLFSLSVTMHLAMAANAVVAPSPFQPSSLLRSSFSGVSVKLTPQSLTFSRSRTLTVFAATKKAVAVLKGTSAVEGVATLTQEDDGPTTVTVRITGLTPGLHGFHLHEYGDTTNGCISTGAHFNPKKLTHGAPEDEIRHAGDLGNIVANADGVAEASIVDIQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPA*


CDS Sequence:
>Vu_12323.1
ATGGACAAAAGCTATCTTCATCAAGAGACTCTACTGCACATTGATGACTTTGAGCTACACGACTTTGATGAAGATCCTAACTTAGATCATTTGATCAATTTCATTCGTTTGGAGAAGAAAGATGCTACTTGTGACTTCAATTCTGAGCTTATCAACGAAGCATTCATTGATAACTCTTTCTTGCCACACCCTGCAATCCCATATGATCAGTGCAATAGTAATGCTATGAATGTCTATGATTCAAATTCTGCACCTAACTCCTCTTGTTTTGATGGGGAAGCCAAAGGAGGAGGAGAAGAGGAAGATGATATGGAGCACTCATATGCAACAACAAGCACAACAACAACAACACCTACTAAGTCAAAACCAAAAACTGACAGATCCAAAACTCTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTCTCATATATGCACGAGCTTCAAGCACAAGCCAACATGCTTAAGGCTGAGGTTGAAGCACTTGAAACTTCCTTACTGCTGTCTAAAAACTATCAAGGATCAGTTGAAAATCCCATGAAGGATGAATTTACCAATAACATCCTTTCAATACGCAAGAAGATAATCCAGATGGACATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGGGTGGCTGCCTCATTGTACAAAGCTCTAGAGTCTCTGACAGGCTTTCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACAGTTTTCAACTTACATTTTCATTGAATGTGAAAATCTCTGAGCCAGAAATTAACCTGCACAGCATGAGGATTTGGCATTATCACAAACATCTAAACCTCTTTTCACTTTCCGTCACAATGCATCTAGCAATGGCAGCCAACGCTGTCGTCGCTCCGTCGCCGTTCCAACCCAGCTCGCTTCTCCGGTCATCTTTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCCTAACCTTTTCGCGCTCGAGGACCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGAACCTCCGCCGTCGAAGGCGTAGCCACCCTAACACAAGAAGACGATGGCCCAACAACGGTTACTGTTCGCATTACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTTCATGAGTATGGTGATACCACAAATGGGTGTATTTCGACAGGAGCACATTTTAATCCTAAAAAATTGACACATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGGGTTGCAGAGGCTTCAATCGTGGATATTCAGATACCACTCTCTGGCCCCAATTCAGTAGTTGGAAGAGCCTTGGTGGTTCATGAGCTTGAGGATGATCTTGGAAAGGGGGGTCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTGGTTGGTTTGACTCCAGCATAA


Promoter Sequence:
>Vu_12323::LG3:15443041-15445041(-)
ACAAAGAAGCATTAAAAATAGTACATATAAATAATTATTCTTTATGTTTTTGTCCCTTTATTGTTATATTAATTGTGATTCTCCCTTAATATTGACTTAACCTTTGAAAATACAACACTTCTCCTAAAGTGAGCGTAATATTAATCAAAAAATATTGTGGCTTTTGCAAGTATCCTTAAACAAATAAAAATAATAGTATGATTTTGCTTAAGCATCTCATTCTTATATCATTAATGAATACTGTAAATGTTGATTATTTTCTTTTTTATTTTATTTTTAATCTATTAGATATATTAAATATTATGATTCAACCAAATTCATTAAGTCTCTCTGTTCTGAATAACTTAAATTTATACCTATTAGAATAGTATTCATATATTATAATCATATAGGTATTATAATTTTTATTTATAATGAGGTATAATTATGTTGTTATTAATTACATTGTTATTATATATTTTCTATTTATAATTCTGTTTTTACTTTTTTTTTATAAATTGTAAATTAGTATTACATAACCAAGTCTATTTATAATTTCTTTTTTCATATTCATTTATCATTATTTTTTTCATTTCTTTATATAATCGTTTTTTACTTTTATTTTATCATAGAGCAAGAAATAAGGATAATTGAGAGAAAGAGATAAACAAAAAAGTAAAACATTTTTACTATAAGGGAAGGGGGTAGGAGGAGTATCTTCCTAAGAGACACTAAATTCACACTAATTTAAATCCCCTAAATATCCGATAAATAAACTTGCACGTTAAAATAAGAACTTTCAATTTTTTTTACCGAAACTATAAAACCTCAATTATTTCCTTTTCTTTCTATTTATTTATGTATTGTCATAAGTTAATATCGTTTATATTTTTTATTCAAGGAATCAACACAAATAAAATATTATCTCTTATTAAAATTTAATAAAATAAATAACAGGAAAAATAGACAAAAAGATTGAAAAAAATGTCTTGTGTGAATCATGATGATTATTACACGAGAGTTATTTGTTAATAACATTATTGGTTAACTAAACCTGATTAGGGACTAATAATAATTTTTAAGATATGTTTAGTTTTATCCATATCATTGCATAACTATTTTGATAGAACACATAAAAATAGTGACGTTAAGTAAAATCGTGATACATATTACAAGGAAAAATAGTTACATCTTAATTATCATTTATATTTTATTTTTGTAAATATCGATCAAAACAATTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTGTGTAAAAATTAAAAATTATTTTTTCATAAATTTGGATCCAACGCTTGCATGTAGGACAGCATCCTTTTGTATTGTTATCCCTTCCTTTCCTCCACAACAATTTTCTATTGATAAAATCACAACAGTAGTATATATGAACAATTGTTCATAATTAATAAACTTTTCAATATTTGATTCCTGAACTAATCTTCTAAAGACACATGTTACCAATTTTATTATATTTAATTTTACACAATTTAATAAAGTACGTGAGGAATAGCGTCATCTTGTTCCCATCAGATTCTGTTCACACACACATAATATTAAGCAGGAGTGCTCATGATCAGAAAGTGACCATATAACATAACTTTAATTAATTACACCATTCAGCTCATGTATTCTCATTCACGACAGCATCACTCACTAAATTAAGAGTAATATAATACATCATCGTTATATATGCTAACCAGCATGATATGAAAATGCAATCTGTGACTACGTAATTAACTATGCATTTAACATTTTCTGAACTTAGTTTTATGTAGCACTTGTGCAGTACTAGCATTATCTCTATATATATTAATGATAATTGCATTAAATTATCACTACCATTTATAACTAAAAGCAGTATGTTGAAATGGACAGCATGCTGTTGCAACGTTAATTTAATGGTGTGAAATATCTATATATTGCAGTTATATCTCTCACCATGTGTGAAGC


Gene Sequence:
>Vu_12323(-)
ATGGACAAAAGCTATCTTCATCAAGAGACTCTACTGCACATTGATGACTTTGAGCTACACGACTTTGATGAAGATCCTAACTTAGATCATTTGATCAATTTCATTCGTTTGGAGAAGAAAGATGCTACTTGTGACTTCAATTCTGAGCTTATCAACGAAGCATTCATTGATAACTCTTTCTTGCCACACCCTGCAATCCCATATGATCAGTGCAATAGTAATGCTATGAATGTCTATGATTCAAATTCTGCACCTAACTCCTCTTGTTTTGATGGGGAAGCCAAAGGAGGAGGAGAAGAGGAAGATGATATGGAGCACTCATATGCAACAACAAGCACAACAACAACAACACCTACTAAGTCAAAACCAAAAACTGACAGATCCAAAACTCTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGGTAGGTGTCTCTACTACTACATTAAAACTTCACACTTCAGAAAATTTCACATAAGACAAACCTGATTGTGACATGTTCAACGTTTTTGAAACTCAAGTTTACTGATGTACAAACATGTATGATTGATTGTGTGGGAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTCTCATATATGCACGAGCTTCAAGCACAAGCCAACATGCTTAAGGCTGAGGTTGAAGCACTTGAAACTTCCTTACTGCTGTCTAAAAACTATCAAGGATCAGTTGAAAATCCCATGAAGGATGAATTTACCAATAACATCCTTTCAATACGCAAGAAGATAATCCAGGTTTCTGGAAAAAGTCTTTCTAACTCCGTAGATAGTTTTTACTTGATCCCTGCACTTTATTGTAATATCTTCAATGTTTCTCTGTGTAGATGGACATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGGGTGGCTGCCTCATTGTACAAAGCTCTAGAGTCTCTGACAGGCTTTCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACAGTTTTCAACTTACATTTTCATTGAATGTAAGTTGGAAGAGAAAAGAATTTCAATTTTACTTCCAAATTTAGGATATAGTTGTAACTTTTGTTTACTGATTTTATCATATTGATGTGTTGAAAACAGGTGAAAATCTCTGAGCCAGAAATTAACCTGCACAGCATGAGGATTTGGGTGTGTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCATACCATTTTTAATGCTTGACTCTTTCAATCTATAAACTTTAAGCTGTAATCAACTAAGGTTGCAGAGACATAGAGCTATTATGACTAGTCATGAAAATCTATAATCTATAGTCAATGTGATAATATATCTAAGTGCTGGTTAGTGGTTAACTTTTTTTGATACATGGGTGATGGCTAACTATGAGCATTGATATGTAACTAATAATTAATTATTTTGAGATAAGAGCCCTATCAATTTTTAAGAACGAATATCAGTAGTATCTGTGTGTACGCTTCTGTTTATAAGTTCTTAAAACTGTAATATTAATAATGCTGCACCAGCACGTTGCAAACTTGAATTAAAATTGTTATCCCAAATGTATAAAAAAATTGCTATCGCACTTGATGTGACAATCTCTGTCACTACTGCCACATTCATCTAAAATTTCAAAGTTATACTATATTTGACTAACTTTCTATTAGTTTATTTTAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATAATAGGAAATGTTTAGGCTGACTTCAACAATTATCTCATCTGCCCTTTGTTTTGATCGAAATGAGATGGAAGAGAAAATAATGAAGATAAACAGCATAAACATATTACACTTTTCTCTGTTTGTTTGAGAAGAGAAAAAAAAAAGGTATTTTCGTAAAATTTATGAAAGGAACAGTTTTTTCTTAGAGTTGGTTTTTTAAAGAAAATAACAGAGGTTAAGATAATTATTGTAAAAGAATATATCAAATATATTAATGAATTATATTTATTACATACTACATAGTTATTACTTTTTCTATCTGATAGAAAATAGTACTAAATTTCAGAAGCAGCCAAAAAAGAAATGAAAAAGGAAAAGAAGTGAAAGGTCTAGAGTTTCGAGAGCGAGTGTGCGCGATGCACTATAAGATGAAGAGGATTTTATAATTTGCTTTTAACCACAGATTCACTCACATTCTGTGTAGCATTATCACAAACATCTAAACCTCTTTTCACTTTCCGTCACAATGCATCTAGCAATGGCAGCCAACGCTGTCGTCGCTCCGTCGCCGTTCCAACCCAGCTCGCTTCTCCGGTCATCTTTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCCTAACCTTTTCGCGCTCGAGGACCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGAACCTCCGCCGTCGAAGGCGTAGCCACCCTAACACAAGAAGACGATGGTTTGTCCTCTCCTCTTTGTAACAATTAGTTTGATTGAAGTCGAAATGAATACAATGGTGACAAGCGATGAGTTATTCAAGGAATTGTGCATTTTATTCTCATTCTATCATGTCTCACTGAGTCTGGTAGAAGTAGAAAGCTTATCACGGTGACATTTAATTATTGATGTGACTTTTTTTAAGAGTATTTCATTGAATTATTAGTAGTTCAATTTTTTTACGGACTCATTTATATGAAAAAAGTATTCAGGATCTATCAACTAACCCCTCAATTTTTTAGATATCAAATTGAGTATTGACTCGTTTTATGTCTGAGCAAGCATTGAAGTGTGAAGAAAGAAATTGATACATTTTGGTTTTCTGAAACTGGTGTAACCAAAAGAGCATAATATAACTATACAAGAGAAGGACTCTTCTTCGCTTGAGGAATTGTAGTTTTATAAATTCTTTATAGTTTGAATAAATTTATCTGAATTGAAAGAAACAAGGAAATAAAATGAATTGAATTTCTTTAATAAGCTAAAATCAGCTTATCTCAGCTTTTGAAGAGTTAAGTAGAAGAGTTTCCGTAAGAGTTAAGTACACAAGTTTATTTTAGCCTAGTGGAGAAGCGCATTCATTTTCACTTCTAGTTTCTTCTCTAATAAGTAATTGTGGGATAACTTTTCCGGACAAGGCAAAAAATAAAGAGAAAAGATGAGAAGTGAGAAAGTAAAACATTCTCCCCCATTTTGCAGCGGATAGTGTTGGGAAGAGAAAGATACGAAGAAAAATAGGATGAAAATGAGACAGAAGTGAAGTGAGTGGATGTTTCAAATTAGCCTTTCGTCATGTGTGAATGTCAGTTGCTACTTTTCACGTGTCTCTAACTACCTATCTTTGTGTAATGAGTAGGCCCAACAACGGTTACTGTTCGCATTACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTTGTGAGTGTTTGCTTACCTTGTTACTTCATGTCCATTCCTTCAAAATTGTTTTCTTCGTAAACTCTTTTATCAATTTTTCTTGCAGCATGAGTATGGTGATACCACAAATGGGTGTATTTCGACAGGTTAGGCAGCTAGAACTTTGTTTCCATTTTTTGCTTCACTGCTTTCTTTTCTTGCCGTGGTCCGGTTCAATTAAACTTCTTGAATGTCTTTTAGGAGCACATTTTAATCCTAAAAAATTGACACATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGTATATCTTCTTTCTTTTCTCGTTTGTCTTCCTCTATATTGAACTGCTTTCTGGACCTGGTTATGTATATTGTTGTCCTTTGTTTTGAAATATAGGGGTTGCAGAGGCTTCAATCGTGGATATTCAGGTTCTCTTTTTAATTTGTATTTTAACACGATACTTGTTCTTTTGATACATATCTGTGAAATCATGGTTTTTATGCTCGTCAGTCATAATTTTAAACCATTTTGAACGATATAATTCCACATTGAATTGAAAGTGGCTAATTGTGTTGTATGTTTGGCATCAAACATGCAGATACCACTCTCTGGCCCCAATTCAGTAGTTGGAAGAGCCTTGGTGGTTCATGAGCTTGAGGATGATCTTGGAAAGGGTTAGTTATTTCATTTTAATATTTATTTATATTTGCATTTGGATCCCTGTGCTGTGGACAAAAATTACTTCCACTGACTTCAGCAATTGCATTACCGAAATAAACAGTAGCGAGTATGTATGTATAATGGGAGGAAGGACCTGGGAATGACATTGGTTTTTCATCTTGCATTTTGTATCGCACATTGCGGTTGGAATCTTGTGTAGTATGGGCAATATGTATGAATCATAGCTGGATTATTTTTGCTTGTCTTATCTGCGTTTGCTTTTACATTTGCAGGGGGTCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGTGGTATGAAAAAAATTATAAACTAGAACTGATCTATCCTTTTCATGTTCTTCTATTCTTCCAATTCAACATAATTATATTTATGTTGTTTGGTTTACTCTTTGCTTCAATGCTCTAAGATGAACTATTTTCTATAACACTGATTTGCTTACAAACTGGTTTTTTGATAAGTAATGCATGATTTACAGACTATCTCTAATATAATTTTCAAAAGTTGTGCACTTGAGTCTGTTGAATAAGCTGACTCCTGATCTATAGTGTAGATTAATACTGCTATCCACTACCAAATTGAACAGAGAAGTAGAAAACTTATCACGGTGACATTTTATTATTGATGTGACTTTTTTTTAAGAGTATTTCATTGAACTATTAGTAGTTAGATTTTTCACTCAAATTAAATTTAAACCTCCCCCCACCTTTGTCATCCTGCCCCCCGCTCATGATGATTATTTTAAATTGAAATTATGTATTTGTAGAACAATTAACCTCAAATATGAAATGAATCTATTTTTTCATATAAACTCAAAATATAATAAATAGTTTTTGAATTAGTGAAGCTAATATATTTGCCATTACTGGTAACTTTGAGAAGTTTATTCAACAATTCAATTTTCAAAAGTTATAGCTTATTTATATGTCGGCTGTCTTCATAATGTTTATACTCCAATTTTTGAATTTATGTTTATCCTGTGTGATAATGTGTTTGTGGTTGCTTGTTTGCAGGTGTGGTTGGTTTGACTCCAGCATAA