Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12404	LG3	16599407	16604776	PREDICTED: serine/threonine-protein kinase GRIK1-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein phosphorylation, response to virus, protein phosphorylation, protein phosphorylation, response to virus, protein phosphorylation, intracellular signal transduction, protein phosphorylation
Cellular Component	is active in	cytoplasm
Cellular Component	located in	nucleus
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, kinase activity, protein kinase activity, protein kinase activity, kinase activity, protein kinase activity, kinase activity
Pathway	B 09165 Substance dependence	C 05034 Alcoholism [PATH:ko05034]

SNP	Position	Effect	Amino acid change
C/A	16599589	3_prime_UTR_variant
T/C	16599733	missense_variant	p.Lys397Glu
G/A	16599734	synonymous_variant	p.Cys396Cys
T/A	16599885	intron_variant
A/T	16599999	intron_variant
T/A	16600014	intron_variant
C/A	16600063	intron_variant
T/C	16600087	intron_variant
T/G	16600103	intron_variant
G/T	16600110	intron_variant
C/T	16600134	intron_variant
A/G	16600311	synonymous_variant	p.Tyr304Tyr
C/T	16600368	intron_variant
G/A	16600698	intron_variant
G/A	16600699	intron_variant
T/C	16600957	intron_variant
C/G	16600963	intron_variant
T/A	16601035	intron_variant
G/A	16601052	intron_variant
T/C	16601145	intron_variant
T/A	16601202	intron_variant
T/C	16601203	intron_variant
G/A	16601208	intron_variant
T/A	16601277	intron_variant
G/A	16601292	intron_variant
C/T	16601381	intron_variant
A/T	16601382	intron_variant
G/A	16601514	intron_variant
G/A	16601620	splice_region_variant&synonymous_variant	p.Asn247Asn
C/T	16601955	missense_variant	p.Glu210Lys
T/G	16601956	synonymous_variant	p.Val209Val
C/T	16602377	intron_variant
A/T	16602407	intron_variant
G/A	16602495	intron_variant
C/A	16602669	intron_variant
T/A	16602792	intron_variant
A/G	16602863	intron_variant
C/T	16602946	missense_variant	p.Gly130Ser
A/T	16603178	intron_variant
A/T	16603202	intron_variant
G/C	16603233	intron_variant
G/C	16603441	intron_variant
A/T	16603445	intron_variant
A/T	16603481	intron_variant
C/A	16603496	intron_variant
A/G	16603688	synonymous_variant	p.Asn61Asn
A/T	16603854	missense_variant	p.Leu6His
A/G	16603905	5_prime_UTR_variant
T/C	16603940	intron_variant
A/G	16604260	intron_variant
A/T	16604544	5_prime_UTR_variant
G/T	16604547	5_prime_UTR_variant
A/C	16604712	5_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12404.2

MFEKTLSFACVMGCCSCFGFIRTPNRQRQSSKPAINNNLYQEPLLDVDDDIEDEEGDHLYNDEVNNTSGDDAEEETRPKKSEEILNLRVENGMVCRQFPVKDTHKVVRMEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGTGPACGLGEETARTYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAVEDNKDELRRSPGTPVFTAPECILGLTYGGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNNLNPPLKNLIEGLLSKDPRLRMTLGDVAEDSWIIGDDGPIPEYLCWCKRKSLGIENHDESKTN*

>Vu_12404.1

CDS Sequence:
>Vu_12404.2

ATGTTCGAAAAGACTCTTTCTTTTGCCTGTGTGATGGGGTGCTGTAGTTGTTTTGGGTTCATCAGGACACCTAACCGTCAAAGACAAAGCTCTAAGCCTGCCATTAACAATAATCTCTACCAGGAGCCTCTGTTGGATGTTGATGACGACATTGAAGATGAAGAGGGCGACCATTTGTATAATGATGAGGTTAATAACACTAGTGGGGATGATGCCGAGGAAGAAACTCGGCCCAAGAAATCAGAAGAAATTTTGAACCTGAGAGTAGAGAATGGCATGGTTTGTAGGCAGTTTCCTGTTAAAGATACTCACAAAGTTGTTCGTATGGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTACGGAAAAGTGGCTCTTTATCGTAGCTCTGTGGATGGAAAGCATTATGCAATCAAGGCCTTCCATAAATCTCATTTACTGAAACTTCGAGTTGCACCCTCAGAAACAGCCATGACTGACGTACTACGAGAGGTTCTCATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATCACTTCTATATGGTACTTGAATACGTAGAAGGCAAATGGGTCTGTGAGGGTACAGGTCCCGCATGTGGCTTAGGTGAAGAGACTGCTAGGACATACTTGCGTGATATTGTTTCTGGATTAACATATCTTCATGCTCATAACATAGTACATGGGGATATTAAACCGGATAATCTGTTGATTACTCGTCATGGTACTGTGAAGATAGGGGATTTCAGTGTCAGCCAGGCTGTTGAGGATAATAAGGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAGTGTATATTAGGTCTGACCTATGGTGGTAAAGCTGCCGACACCTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCGTTTCTTGGAGACACACTTCAAGATACATACGACAAAATAGTAAATAATCCTTTGGTACTCCCCAATAATTTGAATCCGCCATTGAAGAACTTGATAGAAGGCTTACTTTCGAAAGATCCAAGACTAAGGATGACTTTGGGTGATGTTGCGGAAGATAGTTGGATTATCGGAGATGATGGGCCAATTCCCGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTAGGGATTGAAAACCATGATGAGAGCAAGACCAACTAA

>Vu_12404.1

Promoter Sequence:
>Vu_12404::LG3:16604776-16606776(-)

AGAGATTTAGGGTTTTCTTAAAAAAGTAAAAAAGGTATAAAGGTAAAAGGTTAAAGTAAAAAGGATAGTTTTGTAATTAAAAAAAGTAAGGATCCAAGAACAAAAAAAAATTGAAGAGTCCTATACAATTTTTTTGTTGTAATTTTTATTTGTGGTTTATTGATCTATTAATTGCAATAAGTATTTTTCTTAGAGTCTTTCCGTTGTCTCATTTAACTTTTTTTGCAATTCTATTATTTTCTAATTTTATTATTTTGTGTCTTTTAAAATTCCTTGAAATTTTGTCTAGATTTTTATATTTTCTTTGACCTCTTCACATTTTTTGTTCAATCTTTACTGAAGCTATGAGATTTCTTTGTCAAACATTAAAGGGAATTTGAGTGGTAAAAGACAAAATAGTACATTAAAAAATAAAACTTACAAGTGTAATAGTGAAATTTGAATGAAACACTTAAAAGACTGACAAAGTCCTAGATCTTTTTTTTTTATTATTACTAACCTTTTATTGTAGGGCACGGTTTATTCTTCACCAAATAATGAGTGAATTTAGTAATACTAAAAAATGTAACATGTTCCAGTAAAGGAATTCTTCTAAAAGTGGTTTTACATATGAGTAAACCTATTTTACTCCTTATAGAGCTCCATTGATTAGAGAACTTGAAAGTATCATGGAAGTAACACGCAATACTGCAAAATACAAAAGGAAAATGACAACTCTTGAAGGCCTCACAAAGGAGAAAAAAACATGAACTGCAAGAGACACCTCATATATGTTTGGCCTTGGTTGAGGATGTCAATGTTTTAGTGTCCAAAATTGTAAAGTTGAATGACAAGCTTGCTAATCTTAGAAGAAAACACAATCTTGATAAAAAAATCATTGCTAAGAGATAGGACAAGTGCTCTAAGATGTTTCAAATGCGAAGGCTATAAGCATAAACTCATCAATGATATTATAAAAATTAACACGAATATTTACTTTTATAATTTCAATATAAATTTTAGTAATAATTTATTTATTTCCAATGATTATTATATATTTTTTTAAATTATACATGCATTTTTATTATCATTTATGTTATTTCGAAGATATAATATCAATTATCATTATTATAAAAAAATACCTATTAATTTTATTTGGTATAACTCCCTTAATGGAATAATTTTATCTTTTAATAAAAGTATATATATATATATATTAAAAATTATTATTATTTCATTAAATACTCATAAAATTGAAATTTTATATAATTTAATGCAATAAAAAAATGTGAATATGACTAAACGAAATAGTTAAATATATTTTTAATTTTTAAACTAGAAAATAATTAAAATTTATTTTTTCTCAAACTTTTATATATTTTAATCATTAAATTTTAAAATTGAAAGAATATTTTTTTTAATTCAATAACATTAATTTTTTTATTTGTTAAACGATATTCCATATTAATATTTAAGTTAAAATATGTATGTAAATATCTTAACATTAACTTGAATTATGTTTGCACAAAAAAATTTAATGCAGTTAGAGTAAAATAAAAATATTAATTTATTTTTGTTCAAAAATATATCATAATTTAAACATGAAAGAATCAAAATTTATGATTGAAAATATATTTATTCTTAATTAAAATAATCTATATACACTTGCACACCTTCCCCATTTTCCACTTTTTTTTCCCACGTATTGTAAAATTATTCCAATTATTTACTAAAAGATTCAAATAAAAGCGCTATTTACTAAAATTATTCAAGTAGCTGTTTCATGATAACTTTTACTTGTCGTCAATATATTTAAACTACTAATAATTTTAATTCTAAATTGTCAGAAAACCTCACAACTCCTTTCTAAAATATAAAAAAAAAAATATATTTATTAGTGGTTTTAAAAGACAAAATCAAAATATGATCAAATAAATAAATTCACATCAACAATTAGTCAATTTAAGAAAACAAATGAATTTAGTTTTAGAATAAGTACTTCAAAGTACCATGAAAGACCT

Gene Sequence:

>Vu_12404(-)

AAATCGACCATTACTAGATTATTCAGTTTAAAATGATAAAGACAATATAGGTATTTTCTTCCTCTGAGGCGGTTCCAAAATATTCCTTTTTTGTTTCTTTTTCTGTTCACTCCAAATGGCTAGTTACACTTCTCATCCTTCTCAGTTCCACTTCACTCTCTCCCTCTTCATCACTAATCTTTAACCTTTTCCCTTTTTTATTGAATTAATTTCTTACAATTGGGGTTTTCAATTACTATTCTGAATTACGATTCCCTTCACTTTTTCGTTTTTCCCTATTGATTTTAGGGACTTAGGGTTTATGGGTCTCCGAAAGACCCTCGATTCGCGCTAGAAATCTAGGTCTGCTCTGTAGCTTGGGTGACGGTCAGGGCTATCGCACTTTGTCATTCTCGAGCATCAAAAGGAGGTAACTTTATGAACATTGGCATGCATCTGTCGTTTTCGGCATTACCCAAGGTTCTTAGTAAATTTATCAATTTTATTTTCTCCAATCGTGACCCATTTGCCTATTTTTTGTTTTTTTCTTTTGTTAAAATTACACCTGTTCCTTTTTCACGCCAAAGGTCAACGAAATCTCCTACGATTGTTCTAAGCTGGAGTTATCAACATAATGTTGTTGGATGTGAATCGTAGTTGTGGGTTTTATATCGCTACTCGTATTCTCCACCTAGCTGAATGGCACCCATTGGAACAACAACGTTGAGTTGGGCTTGAACCTTGAAGCCCTCCTTTCTTCCCTCTTAATTCGGGTAAGAACTTCTAGTGTTTCTTTGATAAAATTATTGATTTTGAAGATGTCATGCGTTATTGTTGTTGGCATAGTGAACTTAACTATTTTGTTGCTGTTGTAGATTTTAAAACTTTTAGGTTTATAATCAATCATCTTTTGGGTCCAAGCTCCACATGTTCGAAAAGACTCTTTCTTTTGCCTGTGTGATGGGGTGCTGTAGTTGTTTTGGGTTCATCAGGACACCTAACCGTCAAAGACAAAGCTCTAAGCCTGCCATTAACAATAATCTCTACCAGGAGCCTCTGTTGGATGTTGATGACGACATTGAAGATGAAGAGGGCGACCATTTGTATAATGATGAGGTTAATAACACTAGTGGGGATGATGCCGAGGAAGAAACTCGGCCCAAGAAATCAGAAGAAATTTTGAACCTGAGAGTAGAGAATGGCATGGTTTGTAGGCAGTTTCCTGTTAAAGATACTCACAAAGTTGTTCGTATGGAGGTAATTGTTGTGTGGGTGTAGCATTATAGATTTTGCTCCAATGGGGATTTGACCTTTTTTGTGCTGGTTGATCTTGATTATATTTGAATGAAAATTTCACTGTTTTATGTGGTTTATGGTTTCCAGTTACTTCCTCTCTTTTATGATGTGGTGTGTTTATATTATGAGCTGCAATCTAAATTTATTATATTTATTTAATTTAAATGGAAAATGAACTATTATAGATTTTTAATGGAATGCTACATGTCAAAGAGTGTAATTTTTTATATCATACATACAACATTTTCAGTGTTAGACATGAAGTTGTCGCTGAATATTTGAAATGTCTTGGGTTATTATTTTTTTTTTAAGTTATTGTGTTATCTGCTTCGTCACCTGCCATAAGTTCTTGGTTTATTAACCTTGCAATGAAATTTACATCTCTCACACTTATAATGGCTATTTGAAGATTACTAGTATTGACGAATATATTTTCTCTGTTGTTGTGAATATATTTTCTCTCAGAACTTGGAAGTCATATTGAACTTTTATTTTCAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTACGGAAAAGTGGTTAGTATTCATGGTACTTGATTACTTTTCCAGTCTCAATGAAGACAATTTTCCTAAGCCTCTTTTTTACATGCATTACAGGCTCTTTATCGTAGCTCTGTGGATGGAAAGCATTATGCAATCAAGGTAAGGAAAAATTTTGGTGTTGGTAGACAGATTATTCATTACTGTAGGAAACATGACCATACGGACAGTTTTTTTACACTGGGCTTTAACATGTATTGAATGTTCCAATAATTATTAAGATAGTGGTGTTTTTGTCGTTTGTTGAGCTTGAAATCTTTTCAATTGAAGGCCTTCCATAAATCTCATTTACTGAAACTTCGAGTTGCACCCTCAGAAACAGCCATGACTGACGTACTACGAGAGGTATATTTCTTTGTATCTTTGGTTTTCAGTCTAAACTCTATGTTTAAAACATGAATATGTTCAACTTTGGTAAATACATTATATAATTCCCTCATGTATGCCTCTATATGGTTTCACCTCATGGGCCATCTGCTTTTATTTGTGGTTCTCTTTAGACTGTACTTGCAATTTATTTACTTTTAGAAAGTACCCACATTCTTTCTTTGGCAAAATTTGTACATCCCATTTTCTGGAAAATTCCGTTGCATGCTTTTCAGCTTATTATGCTTCTGGTTTGGTATTTATGATAAACTATGTTTTCTAAATCTATCTGCTTTAGCTGTTGATGTCCCTATAGTATGTTAAAAGGCCAATATTATTTTTCTTTTCCAGGTTCTCATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATCACTTCTATATGGGTACTGAGGACTAGTTTCTTCCTGGTTTTCTTGTTTAGTGATTTACTAAAAATTATATGTATTTGAGTTGAAATGAAGATAAATAATACAATTGAAGTCATATGCTTGACTGCTGATTTTTCTCATACAGTACTTGAATACGTAGAAGGCAAATGGGTCTGTGAGGGTACAGGTCCCGCATGTGGCTTAGGTGAAGAGACTGCTAGGACATACTTGCGTGATATTGTTTCTGGATTAACATATCTTCATGCTCATGTAATATTTCTCTATCTATCATTGTGTGCTTCAAACTAATTAAGTCTCTCTCTCTCTAACACAGTTTTTTCATATAAATAGCAATATATGATGGTTTTCATGTTACACAACGAAAAGAAATTATAAAATGACACCATTTATCTTAGATGCTCATATCCTTATTTTCAAATATGTTTAAAGTAGTTTGATCAATTTAATGATTTTTTTTTTCTGGAAAAGCAGAACATAGTACATGGGGATATTAAACCGGATAATCTGTTGATTACTCGTCATGGTACTGTGAAGATAGGGGATTTCAGTGTCAGCCAGGCTGTTGAGGTAATGCTATTCCGGTCTCCAAATGCAAATTTGATTACTTAAAATAACATCAAAGCTGTTGAGTTTACAGGGCATTATTCTTTCTTCAACTGCAACATGTGAAACTTTTCTTTTAGGGGAAACTGAAATAGGATTGCAAATGTGTGAAACTTTAAATGTGATTACAGCAAAGGATGAAAGTTATGTACTCATCAATAGTTGATATAAAGTAATGACTTGATTAAACAAGTTTATCACAAATTGTAATAAAGAAGTTTGCTAGTGTGTCAAAGCATGGGAACTCTTGATTTCCCCTAAGGTGATTAGTTGATCATCAATCATATAATTGATTCTGACCTACTGAGTTTAGATAATGATGTAGAATTTAGGTGGGAAAGAGGTAAAGTTAGAAGAATAACAGAACAGAAAAGACAGAGATAGAAAGAGAGATCAAGGAGTTGTGCAATCATGAGAATGTTTATTCTAATCTTCACACCCGCAGAAATGAAAGAAAATGACGTGAAACAAACACCCTCTGCTCTTTTGTGTTTTAAATAAGGGAATCACAAAAATATCCATCAAAAGCATATAACAAATTAAATAAAGCACAGGGTAAAAAAGGGTATTTTCCAGTGTATAATACAAACTCTTATCGCATTGTGTGACGATGGCTCTGAAAATTTTCGGTGTAGAATACCAAAAGTGATTTTGGTGGCCATGCTTTTCTAACTCCCCATCACATGGAAAAGTGAAGCAACCATGCCCCCGTTGTGGTTGGAGGCTGCATCACCCCAGTCTGTTGCCATATCCCACTAATGATGAGCATATATAGATAAAAAGCAATGCTTCCCCCCCTAATTCAAACAGACTAATGCTACTATACAGAGGCAGAGTTGGTCCGGCAAAAACCAGCTAATCTTCTATGACTAAGGAAAATACAAAGGAGAAAAAATTTAGTATATAAGACAAAACTCTAAATCTGTTCTTAATTGGATCATTCACATCTTATCCTAGTTCATTCTATTCTTCGTTACTTTTTTTACAACAAAATTTATCGGTTAATATTGCAGGATAATAAGGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAGTGTATATTAGGTTGCTTTTACTTTTCAAGCCTGCAAGGTTCTTTTGATATTAGTTGAAGTACAGGCTCTCACTGCTGTTGTGTCTGGTTATGTTTGTAGGTCTGACCTATGGTGGTAAAGCTGCCGACACCTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCGTTTCTTGGAGACACACTTCAAGATACATACGACAAAGTAAGAATTACACAGACATATATATGACAAAGCAAGAAAGATGCAAGTTTTTATTTTTATTATAATCACAAGAAAATTGTCCCTTTTCGCAAGTTCGCATATAACAACTTTTTCACCTAATACATGACATTCACGTTGACTGGTGCCTATGTCACAATTTTTTTTTTATCAGCGCCTATATTACAAACTTAACATGCTGTGTTTTTTTTTTAATCCAGATAGTAAATAATCCTTTGGTACTCCCCAATAATTTGAATCCGCCATTGAAGAACTTGATAGAAGGCTTACTTTCGAAAGGTATGCATAACGTTCTGTATTTAAGTCATATCGCGTGATTATATTTGCCTTGTTAATGATTAAGGTACATTTGAAATCTGCAGATCCAAGACTAAGGATGACTTTGGGTGATGTTGCGGAAGATAGTTGGATTATCGGAGATGATGGGCCAATTCCCGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTAGGGATTGAAAACCATGATGAGAGCAAGACCAACTAAAATTAATTTTAGCTTGCATTTATGTACAGTTGAAAACTCTGATTTTTTTTCCCTTAGACTCGTGGTATTTTATGATTTTAGAGAGGCAGTCTTGAAGGAATCTCAAACTTTAAGAAAATGTGGCTCATCTAGGCATGATAAGTAGCAGAGGATAAAAAATGTTTACTTATTTTTTGGTGAAAGAATTTGATGTTCAGAAGTAGAAACTTATGTTTATCTTTGTATACATTGACCATCAACAAGCACAAGGCTTTTTAGGTCCATTTTTTTTTGCAT