Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12451 LG3 16981862 16983313 PREDICTED: LOB domain-containing protein 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to salt stress, defense response to other organism, response to water deprivation, negative regulation of abscisic acid-activated signaling pathway, response to fungus, immune system process, salicylic acid mediated signaling pathway, cellular catabolic process, salicylic acid mediated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, phyllome development, negative regulation of abscisic acid-activated signaling pathway, response to fungus, defense response to other organism, organic substance catabolic process, cellular catabolic process, response to salt stress, organic substance catabolic process, phyllome development, response to water deprivation, defense response to other organism, response to water deprivation, salicylic acid mediated signaling pathway, response to organonitrogen compound, regulation of defense response, cellular catabolic process, negative regulation of abscisic acid-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway
Cellular Component   located in   nucleus
SNP Position Effect Amino acid change
T/C 16982099 synonymous_variant p.Glu126Glu
T/G 16982238 intron_variant
A/G 16982442 intron_variant
G/C 16982538 intron_variant
T/C 16982541 intron_variant
C/T 16982544 intron_variant
A/G 16982575 intron_variant
A/G 16982640 intron_variant
G/T 16982731 intron_variant
A/C 16982829 intron_variant
G/A 16982929 intron_variant
T/C 16982938 intron_variant
T/G 16982982 intron_variant
G/A 16983092 synonymous_variant p.Phe74Phe
T/C 16983170 synonymous_variant p.Arg48Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12451.1
MESSDTYTPTSSAPLSHSPTSSSSSPPPPPPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHTGGYQSGMNNFFEENTSPNSLWEPLWT*


CDS Sequence:
>Vu_12451.1
ATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCTCCACTTTCTCACTCCCCCACTTCCTCTTCTTCTTCACCACCACCTCCTCCACCTCCCACTGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCGTATTTCCCTCCCACTGAACCTGCAAAGTTTACCATTGCTCACCGTGTGTTCGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTACGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGCTGTGCAGGAGCAATCTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCCAAATCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTGATCTGCATGGAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTCGACAATTTCATTTCAACTCCTCCTCACACCGGTGGCTATCAAAGCGGCATGAACAACTTCTTTGAGGAGAACACTAGCCCAAACTCACTATGGGAGCCCCTTTGGACTTGA


Promoter Sequence:
>Vu_12451::LG3:16983313-16985313(-)
CATAATTGTGACCAATTAACTCTCTGCCACACGAATACAAACAAGCACATACACCCAAAGAAACGTGTGCACATAATTTCCACCAAATACTTATTACAGAGAGTTTCTGTATCAATAAGCAGAGTCTTTTGTAGTAGTTGAGTGAGTAGAAATTAGAAAGCTACTCTTGTCTCTATCGTGGCAGCAACATACTCTGATACCATCTCTAACAAACTGTTTTTACGCACAAGAAAAGAGTCATTAAGTATGTAATAAGAGAGTCATAAATCAATTCATATAAAATACTTTATGTAATCTTTAGTAAGTCTTTGAAGAGATGATTTATTGCATTGAAACAACGGCTACAAGTTGAATCCACATAAAAGATTAATATTACTTTTACTCTAAAATTTAAATATTTTTGTAAAGTTGAATATTCCCTTATATTTCTTGATCAATTTCAGTCTTAATCAATGTTATGATAAGTGTTTGTGAAAAAAGATCCCACTCACTTTACTTGGGACATTTAATGGACTTTTAATCTTTTATTGACTTAATCAAAACCCAATTATCCAATAACCATCATTATCATTATGAAAAGTTATTAAGGATTAGGAATCTAATTAGGACATTTGGCTATTTTGTTGGCTATGGTTGTCGCTTGTTAATACGTTGTTGTTTGGATGAACACAACTGCTCATGGTACTGAGGTGTCTGTGGTTATGAGAAGCATTGATTTTCGAACACTTACACTTAATATGATGATGACTTTATCGGTTATTTTTATTTTATATTCAACTTGATCTTTTTTACTTATTATAAGACTTAGATCTACGTTAAATTCTCAGCAATTTCAAACTTAGAATAATACAATAAATTTTTAGATCATTCTCATGATATACATATACTACTCATTTCACTAATTTTCCTCTAATATCGGATTCTCCACTCCACCTTCAATTCCTCATACAAGTCACTTTGCACAAAAATAACAACTGATAACGTGTTACTCACTGCAATGAACATTTCATGCAGTAAAATTATATAATGAGTTTCATAGTGAGATAACATACATACAAAGGGTTATGTTATTATGAGCCAGATGTTTAGTCGACCATGCTAAGCAAATTTAAGGAAGAAAAACAAAAACTGTGACTAGCTCAAGGATATGATTGTTTTTTATTTGTCTTCTGGGGCTGCTTTTCATTGTGTTGTCCATTATGACAAGGTTCAAGGATAAGAGGGAAAAATCGAAAACAAACAAACGAAGGAGTAACGTAGAATGGTCTAATTTATATATGTAACTTACTTGTTATACACGTAAAATGATTTTGAGAAGGAGAATTGTATACTGTGAATGAGAGATTTAAGCATGTTGGTGACAGTTAATGTGTGATTCATTTTGGTTTTGAGGGCATGGTGTAGTAAAACTCAAGTCCAACAAAGGTGGAGAGTGAAGAGGACATGATTATTCAAACATATACATAGGTTTGTATGTTTTTCTAACTATGAACAGGGGAAAGCACTTTCCACATTCCTAGACAAGTTAGGCAAACCACAAAAGATTTTGTGTGGAAAATGCAGAAGATGGTTCGTTATGGAAGGAAATTAATTGTGGGGAATAATTTTTATTTATTGTTTTGGAAATTGTTGATTGAAGTAAAAGCCGGGGAAATCACAATCTGAATGTGTCTTGAAAAGGGTATTTTTCAAAGAGGAAGAGTTTTGATTCATACAATGAGCCAAATCCACAACACCTAACCAAGAAGTGGGAAACCACAAGCAGCCACGTAGGTTAACGAAATTCAACTGTGACATCACTTTTCCATGCCATGACATGCTTCCAGCTTCTCCTTTTCTTTATAAAAAGGATTAGGATTCAGCTTCCATTAACAAACCCCACCAAGCCACAAGCACACCCTCTTCTTCTTTCTTTCTTTGTGTCCCTCAAACACGACACAACCAGAGAACAGACACACACAAAGGAACAGACAAACAAACAAACAAGGTTAGAAACTGAG


Gene Sequence:
>Vu_12451(-)
ATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCTCCACTTTCTCACTCCCCCACTTCCTCTTCTTCTTCACCACCACCTCCTCCACCTCCCACTGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCGTATTTCCCTCCCACTGAACCTGCAAAGTTTACCATTGCTCACCGTGTGTTCGGTGCCAGCAACATCATCAAGTTCCTACAGGTTCTGCTCACATCACCCTTTAAAACCATACTTATTTGATTCCCTGTCTTCAATCTAAACCAAATCAAAAACGTTTTTCAACATGTTTCTGCTATCTGAAGTCTGTGTGTGAGATATCGTGGTACATGTTAACTAATTCCTTCATATGCATTATTAATTTTCACAAAATTAAGCATTGATCTTTGAGATCATGGAGTTCCAACAAGATTTTAGGAAACTCCATTTTTGTACTTATCACCCGACAAAGCATCCTCTGCACACACACACACACACAATATTCACTTCTAGCCTCTAAAAATAATCTCTCCTTCAAAAAAAAAACTGTCTTTTCTCTTTCTTTTTATTTGTGAAAAGAGATGACAGATAACATATTTCTACACATGATGAGTAAACAGTTTTCTTTATGGATTCAAAACAAAAATTACTTTATAAGAAGTAACAGATTTGATTTTTGTAAAAAGTATTCCCTACTTTAGCAGTGAAACTTGAAAAGTAAAAGGTACTAAAGACTAATTATGCCAAGCTTCTGACTTTAATTGTTTTTTCTAAGGTCAATGAGGGCCTTTACCCGATTAGAAGAAATGGAGCATAGTGTTCTAATACGATAACAAATGCGTTATCAACCACCTAATTTTAACAAACACCTGGTGGGGTCTCCAAGTGGTGATATTCATTTAACAATCTTCTGTATTCCAAGTCTCGGTCTTTGATAAGTCTTTAAAAATGAAATCTGAGATCTAGAAGCAATCAACAGATACCTAATTTTGGAACCAATAAATGCTTTTGTCAAGGTTTTTCATTTCATCATCTAAACATGTTGTTGAACATACCTTTCAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTACGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGCTGTGCAGGAGCAATCTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCCAAATCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTGATCTGCATGGAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTCGACAATTTCATTTCAACTCCTCCTCACACCGGTGGCTATCAAAGCGGCATGAACAACTTCTTTGAGGAGAACACTAGCCCAAACTCACTATGGGAGCCCCTTTGGACTTGA