Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12456 LG3 17076568 17078084 PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, stomatal complex morphogenesis, plant ovule development, embryo sac development, protein phosphorylation, plant ovule development, plant ovule development, plant ovule development, protein phosphorylation, stomatal complex morphogenesis, stomatal complex morphogenesis
Cellular Component   located in   plasma membrane, plasma membrane, membrane
Molecular Function   enables   signaling receptor binding, receptor serine/threonine kinase binding, kinase activity, receptor serine/threonine kinase binding, protein binding, receptor serine/threonine kinase binding, protein binding, protein binding, protein kinase activity, protein binding, protein binding, protein binding, receptor serine/threonine kinase binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein kinase activity, receptor serine/threonine kinase binding, protein serine/threonine kinase activity, protein binding, protein kinase activity, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
C/T,G 17076737 missense_variant p.Ala201Pro
C/G 17076762 missense_variant p.Lys192Asn
T/C 17076813 synonymous_variant p.Leu175Leu
A/T 17076823 missense_variant p.Ile172Asn
C/T 17076827 missense_variant p.Ala171Thr
T/C 17076919 splice_region_variant&intron_variant
A/T 17076955 upstream_gene_variant
A/G 17076990 upstream_gene_variant
G/A 17076998 upstream_gene_variant
C/T 17077035 upstream_gene_variant
C/G 17077043 upstream_gene_variant
T/G 17077121 missense_variant p.Glu131Ala
C/T 17077123 synonymous_variant p.Lys130Lys
T/C 17077126 stop_lost p.Ter129Trpext*?
C/T 17077190 stop_retained_variant p.Ter108Ter
G/A 17077233 missense_variant p.Arg94Cys
T/C 17077263 missense_variant p.Ile84Val
C/T 17077266 missense_variant p.Glu83Lys
C/T 17077280 stop_retained_variant p.Ter78Ter
A/G 17077651 upstream_gene_variant
G/A 17077660 upstream_gene_variant
C/A 17077726 upstream_gene_variant
C/G 17078012 upstream_gene_variant
C/A 17078077 missense_variant p.Cys3Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12456.1
MICGKIPDQWFSQGRAAVLCLIVGTIILLAMVTVALYRSTQSMELIKGSRGTEQGPSILVILHMGLAIHTFDDIMRVTENLSEKYIVGYGASGTVYKCVLKNSRPIAIELLYNQHQHNSREFETEPETIERNQTQESCHFACPLETVKLDWKARLRIVVGASEGLAYLHHDCNPRIIHRDIKSSNILIDENFEARLSDFGIGKCLSTTRTHASTSVVGTIGYIDPEYARSSTLNEKSDVYSFGIVLLELLTEKKGSG*


CDS Sequence:
>Vu_12456.1
ATGATTTGCGGGAAGATTCCAGACCAGTGGTTTTCTCAAGGGCGGGCTGCAGTTCTCTGTCTCATAGTTGGTACCATCATATTATTGGCGATGGTAACTGTTGCTCTCTACAGATCAACCCAATCCATGGAATTGATTAAAGGATCCAGGGGAACTGAACAAGGGCCATCCATACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTTACTGAGAATCTCAGTGAGAAATATATTGTAGGATATGGTGCCTCAGGTACCGTGTACAAGTGTGTTTTGAAGAATTCCCGGCCAATTGCAATTGAACTACTATACAACCAGCATCAACACAACTCAAGGGAGTTTGAGACAGAACCTGAAACTATTGAAAGGAATCAGACACAGGAATCTTGTCACTTTGCATGTCCCTTGGAAACGGTAAAACTTGATTGGAAAGCACGCTTGAGGATTGTTGTGGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATATTAAGTCCTCAAATATCCTGATAGACGAGAACTTTGAAGCTCGTCTCTCTGATTTTGGCATTGGCAAATGTTTGTCAACTACAAGAACACATGCATCAACATCTGTGGTTGGGACAATAGGATATATTGACCCTGAGTATGCTAGAAGTTCTACGTTGAATGAAAAATCTGACGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTAACAGAAAAGAAAGGCAGTGGATAA


Promoter Sequence:
>Vu_12456::LG3:17078084-17080084(-)
AAGCTATACACGTCAGATTTTTCATTCAACCTAGAACTTCTGGCATACTCAGGGTCAATATATCCTATTGTCCCAACCACAGATGTTGATGCATGTGTTCTTGTAGTTGACAAACATTTGGCAATGCCAAAATCAGAGAGACGAGCTTCGAAGTTCTCGTCTATCAGGATATTTGAGGACTTAATATCCCTGTGAATAATTCTAGGATTGCAGTCATGATGGAGGTAAGCAAGTCCTTCAGAAGCTCCCACAACAATCCTCAAGCGTGTTTCCCAATCAAGTTTTACCTTTTTCAAGGGACCTGTTAGAAAAGAAAGTTAGGCCATAAGAACAATTTTTAGCCACCTTCATACAGATTTACCTTAAAAATAAGATTCAATTGTAAGTAAATATACCATGTAGAAGATCCCACAGAGAGCCATTCTCCATATAGTCATAGAAGAGAAGATTTCCATTAGGAGTTAGAGCATAACCATGCAAAGGGACAAGATTCCTGTGTCTGATGCTTTCCAATAGTTTCAAGTTCTGTCTCAAACTCCCTTGGTTGTGTTGACGCTGATTGTATAGTCGTTTAATTACAATTGGCCGGGAATTCTTCAAAACACACTTGTGCACGGTACTTGAGGCACCATATCCTACAATATACTTCTCACTGAGATTCTCAGTAACTCTCATGATATCATCAAAGGTGTGGATGGCCAAGCCCATATGAAGAATTACAAGTATGGATGGCCCTGAAGAGAAGGAAGAGAAAGAGAAAAACAAATGAGAATTTCGCTCACATAACAATACTAAACAGTATCATCTTGAACATACCTTGTTCAGTTCCCCTGGATCCTTTAATCAATTCCATGGATTGGGTTGATCTGTAGAGAGCAACAGTTACCATCGCCAATAATATGATGGTACCAACTATGAGACAAAGAACTGCAGCCCGCCCTTGAGAAAACCACTGAACAAAGAAGTACACAATAAGGTCCATTATTAACATTGTAGTCAGATAAATTTTACCCCTCACAAACCAATCCTATGTATAAATATAGTCATCATACATATAATTGTAACTATCAAGTCATCTCAGAATGTCACACACCTCTGGATTTTGGTACGTAAGGATCACATATGGATCCTAATCAATTTCCGCATAACAATGGATTTCCAATAAAGCTGCAACATATCACATTACAAGTCGTTGATAAATGAATTAAGAAACCAAGAAAATCCTACAGTTTCCCTCAATAGCTGTCAGCTGAAAACCGAGAGAAGTTCTTCATTAGAGGAATGACCCCGGATAAGTTATTATATGAGAGATTCCTAAGAAATGAAATAAACATTTAGACCAACCACTCAGACACAAATCTGAAGAAAATAATCAGAAAGGAGACATTGGCTAGCTGCTAGGAATACACACAGGAAGTTAAGACTTAAGCAATTTGTAACCTGGTCTGGAATCTTCCCGCAAATCATTGTTGTTTAAAATCTTATTAGAATTATAGTGAAACGAATAGTACGTTATTTAGAATATGAGTAGTTTCAAAAAAATCAACTAGGAAATACATCATTGCTTAACATACAGAGACACAAGATTCTGCAGCTGACCAATTTCTGAAGGTATACTACCCAACAGATGGTTGAATATAGCCAGAAACCTATGTTAGGCTATAAATCAGGTAGGTGATTATTCCTGGATCTGCCTAAAGCTATCCTGTGAATATTAGCTATCCTATGGTTGAATATTCTGTGCTAATATTCACAGGATAGCTTTAGGCAGATCCAGCAATAATCACCTACCTGATTTATAGCCTAACATAGGTTTCAGATATTGGCTATATTCAACCATCTGTTGGGTAGTGTACCTTCAGAAATTGGTCAGCTGCAGAATCTTGTGTCTTTGTATGTTAAGCAATGATGTATTTCCTAGTTGATTTTTTTGAAACTACTCATATTCTAAATAACGTACTATTCGTTTCACTATAATTCTAATAAGATTTTAAACAACA


Gene Sequence:
>Vu_12456(-)
ATGATTTGCGGGAAGATTCCAGACCAGGTTACAAATTGCTTAAGTCTTAACTTCCTGTGTGTATTCCTAGCAGCTAGCCAATGCCTCCTTTCTGATTATTTTCTTCAGATTTGTGTCTGAGTGGTTGGTCTAAATGTTTATTTCATTTCTTAGGAATCTCTCATATAATAACTTATCCGGGGTCATTCCTCTAATGAAGAACTTCTCTCGGTTTTCAGCTGACAGCTATTGAGGGAAACTGTAGGATTTTCTTGGTTTCTTAATTCATTTATCAACGACTTGTAATGTGATATGTTGCAGCTTTATTGGAAATCCATTGTTATGCGGAAATTGGTTAGGATCCATATGTGATCCTTACGTACCAAAATCCAGAGGTGTGTGACATTCTGAGATGACTTGATAGTTACAATTATATGTATGATGACTATATTTATACATAGGATTGGTTTGTGAGGGGTAAAATTTATCTGACTACAATGTTAATAATGGACCTTATTGTGTACTTCTTTGTTCAGTGGTTTTCTCAAGGGCGGGCTGCAGTTCTCTGTCTCATAGTTGGTACCATCATATTATTGGCGATGGTAACTGTTGCTCTCTACAGATCAACCCAATCCATGGAATTGATTAAAGGATCCAGGGGAACTGAACAAGGTATGTTCAAGATGATACTGTTTAGTATTGTTATGTGAGCGAAATTCTCATTTGTTTTTCTCTTTCTCTTCCTTCTCTTCAGGGCCATCCATACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTTACTGAGAATCTCAGTGAGAAATATATTGTAGGATATGGTGCCTCAGGTACCGTGTACAAGTGTGTTTTGAAGAATTCCCGGCCAATTGCAATTGAACTACTATACAACCAGCATCAACACAACTCAAGGGAGTTTGAGACAGAACCTGAAACTATTGAAAGGAATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCATAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTACATGGTATATTTACTTACAATTGAATCTTATTTTTAAGGTAAATCTGTATGAAAGTGGCTTAAAATTGTTCTTATGGCCTAACTTTCTTTTCTAACAAGTCCCTTGGAAACGGTAAAACTTGATTGGAAAGCACGCTTGAGGATTGTTGTGGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATATTAAGTCCTCAAATATCCTGATAGACGAGAACTTTGAAGCTCGTCTCTCTGATTTTGGCATTGGCAAATGTTTGTCAACTACAAGAACACATGCATCAACATCTGTGGTTGGGACAATAGGATATATTGACCCTGAGTATGCTAGAAGTTCTACGTTGAATGAAAAATCTGACGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTAACAGAAAAGAAAGGCAGTGGATAA