Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12469 LG3 17253485 17256532 PREDICTED: mitogen-activated protein kinase homolog NTF6-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   intracellular signal transduction, protein phosphorylation, lateral root formation, protein phosphorylation, lateral root formation, signal transduction, lateral root formation, protein phosphorylation
Cellular Component   is active in   nucleus, cytoplasm
Cellular Component   located in   nucleus, mitochondrion
Molecular Function   enables   protein binding, MAP kinase activity, MAP kinase activity, protein serine/threonine kinase activity, MAP kinase activity, MAP kinase activity, MAP kinase activity, protein serine/threonine kinase activity, MAP kinase activity, protein serine/threonine kinase activity
Pathway   B 09132 Signal transduction   C 04010 MAPK signaling pathway [PATH:ko04010]
SNP Position Effect Amino acid change
T/A 17253708 upstream_gene_variant
C/G 17253716 upstream_gene_variant
G/A 17253744 synonymous_variant p.Ala55Ala
C/T 17253851 missense_variant p.Ala91Val
A/G 17253962 upstream_gene_variant
T/A 17254215 upstream_gene_variant
T/A 17254368 upstream_gene_variant
C/A 17254406 upstream_gene_variant
G/T 17254456 upstream_gene_variant
C/T 17255034 upstream_gene_variant
C/T 17255371 missense_variant p.Pro167Leu
C/T 17255438 synonymous_variant p.Thr189Thr
C/T 17255677 upstream_gene_variant
G/C 17255697 upstream_gene_variant
T/A 17255792 upstream_gene_variant
C/A 17255793 upstream_gene_variant
G/A 17256020 upstream_gene_variant
T/C 17256091 upstream_gene_variant
A/G 17256125 upstream_gene_variant
T/A 17256141 upstream_gene_variant
A/C 17256167 upstream_gene_variant
T/A 17256169 upstream_gene_variant
C/T 17256216 upstream_gene_variant
T/C 17256391 missense_variant p.Ser326Pro
T/C 17256460 stop_lost p.Ter349Glnext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12469.1
MENNAESEKPKGKGIPVHGGKYVRYNILGNVFEVYAKYAPPLQPVGRGAYGIVCCATNSETEEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHDNIIKIKDIIRPAERENFNDVYIVYELMDTDLHQIIQSNQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPNDSDLGFLRSDNAKKYVKQLPHIEKRSFAERFPDTSTLAIDLAEKMLVFDPSKRITVEEALNHPYMASLHEINEEPVCPTPFIFDFEQTTLNEEDIKELIWRESLNFSQDQMLE*


CDS Sequence:
>Vu_12469.1
ATGGAAAATAACGCCGAATCTGAGAAACCGAAAGGGAAAGGGATTCCAGTTCACGGTGGCAAGTACGTGCGCTACAACATCTTAGGCAACGTTTTCGAAGTCTATGCGAAGTACGCACCGCCTCTGCAACCCGTTGGTAGAGGCGCATACGGCATCGTTTGCTGCGCGACGAATTCGGAGACCGAAGAAGGAGTTGCGATTAAGAAGATTGGGAATGCGTTTGACAACAGGATCGACGCGAAGAGGACGCTCAGAGAAATCAAGCTTCTCTGCCACATGGAACATGATAACATAATTAAAATTAAGGACATAATTCGGCCAGCGGAGAGGGAGAATTTCAACGATGTGTATATTGTGTATGAGTTGATGGACACCGATCTGCATCAGATTATACAGTCTAATCAGGCTCTCACTGATGAGCACTGCCAGTACTTTTTATATCAACTCTTGCGAGGATTGAAGTACATACATTCTGCAAATGTTTTGCACCGAGATTTAAAACCAAGCAATTTACTTCTCAACGCAAACTGTGATCTCAAAATATGTGACTTTGGGCTGGCCAGAACAACCTCAGAGACGGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGGGCCCCTGAATTGTTATTGAATTGTTCAGAATATACTGCTGCTATTGATATTTGGTCGGTTGGTTGTATTTTAATGGAGATAATTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTTCAGCAGTTGGCCCTTATAACTGAGTTATTAGGTTCTCCAAATGACTCGGATCTTGGGTTCCTCAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTTCCACATATAGAGAAGAGGTCTTTTGCTGAGCGGTTTCCTGATACGTCCACGTTAGCAATTGATCTTGCTGAGAAAATGTTGGTCTTTGATCCCTCCAAGCGAATAACTGTCGAAGAAGCACTAAATCACCCATACATGGCAAGTCTTCATGAGATCAACGAGGAGCCCGTTTGCCCAACTCCTTTCATCTTTGATTTCGAACAGACGACTCTTAACGAAGAAGACATAAAGGAGCTCATATGGAGAGAGTCTCTAAACTTCAGCCAGGACCAGATGTTGGAATAG


Promoter Sequence:
>Vu_12469::LG3:17251485-17253485(+)
TTCTAAAAAATAATTGGGTGTTACTCCCTCCACCCCCACCTCTTCCTCTCTTCCATTTTCGTTTACCTTTCTCTCTTCCGTTAAGCTTCTTCTCCACCTATAACAAATTCATATTTTAACAAATTCATATTTTAACAAAATTATTACGTTTAAAAACTAACCATATATAACATTTAAAATTATAAATTTAAATATAAATTACTGTAAATAAAATAAACAAATAAAATAAAAACGAAACGTAAAAGGAACACTGCCTCTGGACGGATGACATCCTTCAACGGATGTCAACATCCGTTGAAGGCAAAACGGATGTCGACATCCGTTTTGCCTTAAACGGATGTCGACATCCGTTTTGCCTTAAACGGATGTTGACATCCGTTGAAGGATGTCATCCGTCCATAGGCAGTGTTCCTTTTACGTTTCGTTTTTATTTTACTACGTTTTGCGGCTCATGCAAGGATTATAGGCTTGGATATTAAAAGGATTATTGGAAGTATGGGAAGGATTTAGGGTTTAGGATTATTGGAAGGATTATGACTACGTACCTGGAGAGGAACCACGACAAGGACACTACACCATAAACGCACTGCACCACGTACTGCACCGAGAACAAGAAGAAGATTGTTTGATAATTCTTTTCACGATCACCAAGCTTTGTAGAAAAATATTTTACTCATACAAGAAACTACGTAGGTTATCAGTGAAATATGTTATAAATGAATAAAATTAAAAAACAACAATTTTAAAAATAAAATTTTACTGAGGGGCAAAATAGTAAAGAAAAGGTGGAGGAAGGGGCAAAATAGTAAAGGGGAGGTGGAGGAAGAGATGTGTGGGGGTGGAGGGAGCAACACCCAAAATAATTTTAGATCATATTTATTTAAATGCTTTGGGCCTTTCTTTATGTAGTTTCTCTTTACACCCCATATTTTCTCATGCACATTAATAACACATGAAAAATCTTATTATGTCTTTGAAAAATGACTTAGGTTTATGCAATCTAGAATATTAATATTTTCTGGACTTTTCAGTTTGGAAGATTTTTTAGTTTCAGTTTGAATAATCCAAAAATAATTTTACGTTAACACAATTCGGATGTCTATTTTGCATAAAATAAACTTTAGAGGGTGTCATCCAGTTTTTCTTGAACTATATAATCCAAAAACGTCTTTCAAATTATCTAATCTAAGAGTGTCTTTGGAACTATGTAATTCAAAAACATCTTTCGAACTGTGTATTCAAGAGTTATTCATAAATATTTTTTTATCTTTTGAATTATGTAATTTGAAAACTATTTTTTTTATGAAAAAAATAAATTAACATAAAACATTTTATTTATAAAAAAATAATATTGTGACACATAAATTTTTTATATTTATTTAAAGTTATCATTTTTTTACTCTATTCTTTTTTAAAAAAATACAAAAAATTATTATTTTATAACTATTTTATAGGTAAAAGTGTGATCCTATCATTACTATGAATTGAGTCAATCCGTAGTGAGGTGAGGTGATAATAAGTGGTGAAAACAAAAAAGGAGGCAGTTTGGTCTTTTAACCACCCGCTGGGGGTGCACAAGAAAACTATGGGGGTGTGTAAAGAAAGGGCCTTGGCACATTGTTTTGTGCAGGCTTTTTCTCTTGGCCTCAGCGTCCTTTACATAATACCTTGTTTGTTTTACAAAAAAGAGAAAAAAAAACTGCAAGAAAAGGAGCGGGATTTCACTGACACGATTCAATTTCGAAAGATAATTTTGATGGACAGTGTTGTTTTGGGTTGTCCCCAACTAATCACAAACGGGAAGGTTGACAACAAGAACAACGAAGCAGATTCGAACATTTGAAATTAAATTTGAAAAGTTCGAACGCCAAAAAGCAAAAGCCATTGAAGTCACTGTGGCAAAGTGGACCTAATAATAATCACATTCTGAAATCCTGAATCCCAATTCTCACTCACTTTCCTTGTTCGCTTCGGTTTGTGTGCAGAGAAACGAAAGGAAA


Gene Sequence:
>Vu_12469(+)
ATGGAAAATAACGCCGAATCTGAGAAACCGAAAGGGAAAGGGATTCCAGTTCACGGTGGCAAGTACGTGCGCTACAACATCTTAGGCAACGTTTTCGAAGTCTATGCGAAGTACGCACCGCCTCTGCAACCCGTTGGTAGAGGCGCATACGGCATCGTTTGGTTCGTTCTTCTCTCTTTCGCTGTTTTATTCAATTAATTTAGTTAGTTAATTAGTTATTAATTAATTTAACTGGTTTTTGAATGAATTTACCAGCTGCGCGACGAATTCGGAGACCGAAGAAGGAGTTGCGATTAAGAAGATTGGGAATGCGTTTGACAACAGGATCGACGCGAAGAGGACGCTCAGAGAAATCAAGCTTCTCTGCCACATGGAACATGATAACGTGCGTTTTGTTTTTTCGGTGATTTTTAGAAATTAAAACAATGATGATTTGTGCATTTTTGTAATGATGTTTTATTTGGTTCGTTTTGCTTTATTATTGTGCAGATAATTAAAATTAAGGACATAATTCGGCCAGCGGAGAGGGAGAATTTCAACGATGTGTATATTGTGTATGAGTTGATGGACACCGATCTGCATCAGATTATACAGTCTAATCAGGCTCTCACTGATGAGCACTGCCAGGTGAGGAGTTACGTGGTTGTGGTTATTGCTGAGTGGTGGTGGTGACTAATTGTTTGACTTGAAAGAAATGTAAGTGTGCACGCGTCATAGGAGTGATTGAGAGTTAGTATGAGAAAAGAGTGTTGTGACATTTAAGTGGGTGTCTAAGACCTAGCTTCAGGGATAATGGTGAGATATTTATAGTAATAATACAAGACAGTGGGAGTTCATATTTATAGTATATTTGTTCTCTTCTTTGGTGGTAATGTGGACAGGCTTGTACCTCTGACCATTTGAATCAGAGGTATGCAAACTCGAGTTTGTTATGGCAGTTGTCTTATCCAATTCGAGTAGTATTGTCTCTTGGGGAGGATATCCACATAATCAAGGCAAAAATATGTGGAGATATTTGTTGTCTTGTTTGTGTTAATGACCACCACTCAATGGGCATCTTTGGTGCTTACTGGTGTTTAACGTGGGAAAAAGGTATCTTGTGTAAAGGATACACGGAAAGCGATTAAATAAAGTACCATACGCATTTTATAGTGATGAAGATGAGTTTAATTTATCTCCTATCTCCGTATTTTTCGGCATTGATGTTATGTGGCATTTTGACTGTTTAGTTCAGTAGTTGTTACTTGTTAGTGACCGTGTTTGATGGTATGGGAGGAGAATGTAATTTAATCGAATGTTTCTTCTCATTTGTTAATTAATCTAAATACCACCAAGAATTTAATCCAAGTGGTAAGATAACAAGATTGTTTTTCTTAAATGAAGTTTTGGGGGTGACTAAGTGTTGTAAAGAGAGTAAGTGCTAGTATAGCTTGTGAGTCCACTGGCTTAACTTGGATTAGTTGGAAACTGAGTTGACTTCTCGACGTGAAGGATCTAAGACAAATAAAAAAGAAATCTAACTACTCGAATGATATTAGAAAGTTGTTATCAATACAAAAATGATCAAGAATGCTAATTAGAAAATGGAACTGTTAAATTGGTCATTTAGTGCTGCTTCTGTTTACGATGCCATCTATTGTTGTCCGAGAACCTTGAATAATTCAGTAACCAGCATCAGATCTTCTGATGCTTTTTCCTTGAAACAGATTATGGATCATTACCCTACAAATTTAAATTTCGTCGTTTTATTTGATTTGTATCAATGAAATTTGTAGTTCATAAAACTTAAACTGTGTTTTCAATGTCACTGCAGTACTTTTTATATCAACTCTTGCGAGGATTGAAGTACATACATTCTGCAAATGTTTTGCACCGAGATTTAAAACCAAGCAATTTACTTCTCAACGCAAACTGTGATCTCAAAATATGTGACTTTGGGCTGGCCAGAACAACCTCAGAGACGGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGGGCCCCTGAATTGTTATTGAATTGTTCAGAATATACTGCTGCTATTGATATTTGGTCGGTTGGTTGTATTTTAATGGAGATAATTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTTCAGCAGTTGGCCCTTATAACTGAGGTATTTGTCTTCTCTCTTCACTACCTGGTTGTGTGTTGAATTGGCACAAAAGTTTAGCTTAGCACGGTAGGATCCTTGTCTTCTGAAATATCTTTTAATTAGTATTGATGGTTAATGCAAGCTTACAAGTGATGAAATCTTGATGAACAAAGTCCTGATAATCGTCTCTCAAAACAGTTATTAGGTTCTCCAAATGACTCGGATCTTGGGTTCCTCAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTTCCACATATAGAGAAGAGGTCTTTTGCTGAGCGGTTTCCTGATACGTCCACGTTAGCAATTGATCTTGCTGAGAAAATGTTGGTCTTTGATCCCTCCAAGCGAATAACTGGTATACCTCTTTTTTTCTTTTTTTAATAGTCCATTATGTTCTGTGTAAAATGTGTTTAAATCCCTCAGTATGTAGTCAAAATTGGTTTTAGTATGTCTTTAAAACGATAGCTTTAGACCTTGTATTTCGTAATATGGTACATTTTTTTCTCAATTCTGTACTTCATTTTTACTTCACTATAGACAATCCACCACATTTCAGATGTACAAGAACCAAAACTACGGCGTTAAAATGTAGGAACTAAAATCAATTTAGACCAAATCTCGGAAGACCTAAAAGGCTAAATCACGTTTTACCCTCTTATCTTTTTTATCACGTTCTTTCATTTCTTCATATGTTTTACTTCTTTTCTATGGTTTGCATAGTCGAAGAAGCACTAAATCACCCATACATGGCAAGTCTTCATGAGATCAACGAGGAGCCCGTTTGCCCAACTCCTTTCATCTTTGATTTCGAACAGACGACTCTTAACGAAGAAGACATAAAGGAGCTCATATGGAGAGAGTCTCTAAACTTCAGCCAGGACCAGATGTTGGAATAG