Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12472 LG3 17319658 17323515 probable serine/threonine-protein kinase PBL5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to water deprivation, cellular response to oxygen-containing compound, response to water deprivation, response to hypoxia, hormone-mediated signaling pathway, protein phosphorylation, hormone-mediated signaling pathway, response to bacterium, response to chitin, defense response to fungus, cellular response to hypoxia, defense response to fungus, response to hypoxia, cellular response to hypoxia, protein phosphorylation, hormone-mediated signaling pathway, response to wounding, hormone-mediated signaling pathway, response to bacterium, protein phosphorylation, response to water deprivation, defense response to fungus, cellular response to hypoxia, cellular response to oxygen-containing compound, cellular response to hypoxia, regulation of defense response
Cellular Component   located in   nucleus, plasma membrane, nucleus
Molecular Function   enables   protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
A/T 17319678 5_prime_UTR_variant
G/T 17319754 missense_variant p.Gly2Val
T/A 17319929 intron_variant
G/T 17319931 intron_variant
T/G 17320181 intron_variant
C/T 17321273 splice_region_variant&intron_variant
A/T 17321303 synonymous_variant p.Pro189Pro
A/T 17321669 synonymous_variant p.Ala311Ala
T/A 17321879 3_prime_UTR_variant
C/T 17322189 3_prime_UTR_variant
T/C 17322244 3_prime_UTR_variant
T/C 17322358 3_prime_UTR_variant
T/G 17322359 3_prime_UTR_variant
G/T 17322368 3_prime_UTR_variant
G/A 17322380 3_prime_UTR_variant
T/C 17322383 3_prime_UTR_variant
C/G 17322393 3_prime_UTR_variant
T/C 17322395 3_prime_UTR_variant
T/A 17322396 3_prime_UTR_variant
T/C 17322401 3_prime_UTR_variant
A/T 17322553 3_prime_UTR_variant
C/A 17322558 3_prime_UTR_variant
A/G 17322559 3_prime_UTR_variant
A/G 17322626 3_prime_UTR_variant
C/T 17322631 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12472.1
MGCFCCAGKSCTNSDTEEYGQNFDQKPSNFTAAESVKVDFKVNGKKEDGSKGDQLALDVKSLNLKEEGSQDERDNGNRAQSFSFNELEAATGNFTADCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFAVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEFMPLGSLENHLLDLRPGSKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHMKPAKEQNLVAWVCHYFLPIVFLNEESMIVC*


CDS Sequence:
>Vu_12472.1
ATGGGTTGCTTTTGTTGCGCGGGGAAATCATGCACCAATTCGGACACTGAAGAGTATGGCCAGAACTTCGACCAGAAACCCTCCAACTTCACTGCCGCAGAAAGCGTCAAAGTTGATTTCAAAGTGAATGGGAAAAAAGAAGATGGTTCTAAAGGTGATCAGCTTGCTCTGGACGTGAAGAGTTTAAATTTGAAAGAAGAGGGTTCTCAGGATGAAAGAGATAATGGCAATCGGGCGCAGTCATTCAGTTTTAATGAACTTGAAGCTGCGACGGGAAATTTTACGGCAGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGGATTCGAGAATTCGCGGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAATTCATGCCATTGGGGTCTTTGGAGAACCACTTGCTTGATCTTCGGCCTGGTAGCAAACCACTGGATTGGAACACAAGAATGAAAATAGCAGCCGGGGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTGATATATCGCGACTTGAAATGCTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAGTTGTCAGATTTTGGCCTGGCAAAAGTAGGTCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAGTTGACATTTAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTTATCACAGGGCGAAAGGCTATTGATCATATGAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGTATGTCACTACTTTTTACCTATTGTATTCTTGAATGAGGAATCCATGATTGTTTGTTGA


Promoter Sequence:
>Vu_12472::LG3:17317658-17319658(+)
AACAAGTAGAGTCAAATTCTTTAAACAACTATATACTATAAATATACATTAAATAGCTTAATTATACGTTCTCAACCTCTACAACTTTACATCTTCTTTAAACACCCGCATGTGCAAGTAAAAAAAATCGGTTAAAAGTTTCTCCTTCTTGTTTGATTCTGAATAATTAGTCTAAAACATGTTCAATTAGTATCAAATCATTTTTTTTTTCTAAAAACTTATTTTATTAAAAAAATTAAAGCAAGGTTTGGACTCAATTTCTTTTTAAAAATTAAATTTCAAGACCACAATACATGGAAGAAACCAGCAAAGTCAAATTAAAAATGCTGCTATATAGCATGCCATATTTCACCTACCACATATATACTATAAACAATTCCCCTCACTGCGTTTTTACTAAATAAAAAAAATAGTAAAAGTCACCCAAAAGAGCAATCATCCAGTACACCCAGTTCCACGTGCAACCCTTCCCTGATTGGTTGACTCGCCGCCACGGTCTCGAGTTACGGTTCCGTTACGGCGGCGGATACAGAACGCGTGATCACCGTCAATTTCATTTTAGCGACAGTTTGGAACGAAAGTTCGAAACCATATCAATAGTGCGGTACGCGTAGGCAAGTGGGCCCATTTGATCACGTCACCTGTGGCCCACTGCGATGTTCGAGAGGTTGACTTTTTTGTTAATTTCTTTTCCAATTAAATAAATATTTTTAGAGAGAAACAAGACAGGGTTTTGGTCAAAGCGTTTTGCCAACGTTGAAACAAAACAATGTGATTTAGGGCTATTCAAACGACACACACGTTGCTGTTAATGTTGCGAACCAGCTCGCACCACACACTGAATCCATCGCCACCTAATATTCAAACTTCATCAGAAAACGTACTTAACAATAAAGCGTTTTAAATAAGTTAAAAAATACGGTTTTTATATCATGAATTACAATAAACTAAACAAAATTTAAGTCTTTTTGAATTAAACTAATGAGTACATAATATTAAAAATTATATAATTTAATAGATTGCAGTTTACATATATGTACAAAAAATAAGTTTCTTACATTTAATGAGTACATGTATTAAAATATGGAAATCAGTTAACGGAGTTATTTATAAATAAATATATTGTTTTAATATAAGTTTTAAACTCTTAGGTACATTAAAAAGATATTTCTTACATTAAAACAAAAATATATAATACTTTTTTCAGCAAATACATGCTAAATTAACTTTAAAGGTAAGAATTAACATTAATAAGTCTCTAAGTAACTTTCAATCTTCTTTTTTTCCTTTTGAAGTCAAGTAGTGACTCTTTTGTTAAAGAATGCAACGTGGTTAAAATTCGGACTTCAATGTGTAAAACAAGCAAAAGTATAAAAATTTAATTGCATTAAATGTTTTTATTTGTTTAATAATTTATAATAATTTTAACAATTGAAATATATATTTTTATAGTTACTTTTTTCTTGTATGAAAATAAATTGATTTATAGTATATATTATTGTATGTGATGGATAAAATGTTAAATGTTATCTTATTTTATTAGTTAATTAAAATAATATTTTCAGTCAACTCTTAAAATCTCACGCTTAGTGCTTCAAATCAATGTTCTCAGTCAGATAAATCTCATCAAAATCTTACTCCAAATCCAAAACAAAAGGAAGAGGAAGAAATACCGAAAAAGCCCCTGATCGGAGACAAATCGGCCTCAGGTGATAACATTCTCTTCCCCGTGCGTGTAAAATGACAGAAACACCCCTGGCTTCCTTTGTCCTCATTGTGGCTTGTTGGTGACTATGGAACATTTGTTCACAATTAATTTCCACCTCATATTGACCAAGAATATATTAAAGCACCCACAATACCCAAAAACATCAGAAAGGACTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTTCACTCTCTCTAAAACAGATAGAGTTTGTGTCACTCTTTTA


Gene Sequence:
>Vu_12472(+)
ATTCTCAGTTTTATTTTTTTAAAAAAATTGTGTGTTTCTTCTTCTTGAGGGGGGTCTCTGTTTTCTTGGTGGAGTTTGGGCAGAGAAAGAACATGGGTTGCTTTTGTTGCGCGGGGAAATCATGCACCAATTCGGACACTGAAGAGTATGGCCAGAACTTCGACCAGAAACCCTCCAACTTCACTGCCGCAGGTAAATTTTTATTCTTTTTACTTTAATAATGCATTTCACTATTTCATATGAGCACACTCCTTCTTTTTTGTGACCCATTTTGTCTGATCGTGCCGATTGCTGTGTTTTTTCAGTGGTTTTCGTTTTAATGTGAAGATTAGGTGGTGGGTGTGTCATAAGCTGATCAAAGTTCGTATTTTTTTGGGGGTGGGGTCATCGAGTACTTCTGTTTACGTTTTGGAAGAGTTTTTCTTTTCATTTCTTTTCAGGAATTATCGTTCGGGCATATGCAAAAGGAAACAAAAAAGGAATTTTGATTAGTTTGTTTGGTTTCAATATTGTAGTTAATTTTTGTATTTGGCTTGTGACGTCTTTTCTGGCCATTTTTTATGCTCTGAGTCTTTGAATAGCTTTATTTTGGGTGGCTTAAAACTAAAATTAACCGTGATCACATTTTTGTTTTGTTTGGCTGCGAGATGGGAATTACTAGATCCACCATCAAAATTGTGTTTGTCATTTTGCACAGCTGTTTTGGTTCTGTATGTAGTATCTCCCCGGATTAAAATATTTTTCTTGGGTGTGATTTTGTTTGTTATCGCTCCGCTTTGCCTTATGTGCATTTTTTGTATGCTGTAGAAAGCGTCAAAGTTGATTTCAAAGTGAATGGGAAAAAAGAAGATGGTTCTAAAGGTGATCAGCTTGCTCTGGACGTGAAGAGTTTAAATTTGAAAGAAGAGGGTTCTCAGGATGAAAGAGATAATGGCAATCGGGCGCAGTCATTCAGTTTTAATGAACTTGAAGCTGCGACGGGAAATTTTACGGCAGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTTGTTGAAAAAAAGAAGAAAACTCTTTCAATGCATTGGATGTGATCCTTGTGATGTATTGTGCATTTATGTGTTAATGGATTGTATGGGGTTTCGTAAGGTTTGTTAAAAACCACAATTTTGAACTTACTGATGCACTGAACCCGATCCCACTCTGGTCAATTTATTGTGCATTTATGCACTAATGATGAGTGTATGGCGTCATGTTAGTTTGCATGTTAATTGTTACTTTTGATTTGTGGTGAAAATAAGATTTGATAGTGGTTGTGTAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGGATTCGAGAATTCGCGGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAATTCATGCCATTGGGGTCTTTGGAGAACCACTTGCTTGGTATGTGTTATCATTCTATCATCTCAATTTTTCCATATATTTTCAGCATCATTCCTTACAGCTAGCTCATCTCATTTGTTATTTGCCTTATCATCGTAGATCTTCGGCCTGGTAGCAAACCACTGGATTGGAACACAAGAATGAAAATAGCAGCCGGGGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTGATATATCGCGACTTGAAATGCTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAGTTGTCAGATTTTGGCCTGGCAAAAGTAGGTCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAGTTGACATTTAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTTATCACAGGGCGAAAGGCTATTGATCATATGAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGTATGTCACTACTTTTTACCTATTGTATTCTTGAATGAGGAATCCATGATTGTTTGTTGATTTACTTTTGTAAACCAGTGTAATTAGTTATAGCACAGGTGGTGCCACTTTTAAGCCTTGATGAGTTTGTTTTGTATTACTTTAATATTTCTGTGGCACTTTCATGGTTGTTAAATTCATGAGTTCACTTGTAGACGTGGACAAGTTCATGAGTTTGTGGCCATCACTATGTTCAACTCACATTCCAACTCATTTCTTGGTGGGCTTGGGTATACTCCAGCAAGCTTGTCTCGACTCGCAATTGCATGGGTGAGTTGGTGATTCTATTTGTTGCTGAAAAAACTGACCCAAACGATAATGTTTGGGTTTTTCCAAGGCACAACTGGCTTTAACACAATAGGGCAATAGTGGAGGCTAAATTCACAACACCCTTTTCAGACACCCTACTTGTGATTGTGTTCTTTGTTGACTATATTCAGTCTCTCTCTTGATGCCATTGTCTGTGTTGAAGAATCCCTTTTCTTTTTGTGTTTTGTCTGTGTTCTGTGGCTTCAACTTCTGTTACAATCATTTCTTTCTGCCTTTCTCTGTTCAACAATATCTGGGCAGCTAGTATGAGCTGCAAGTCAATCTGGTAGCAAGCCACGAGTGAGGCCCCAAAAGCCCTCCCTTTATTCTTTTGTCTTTGTACTGGCGTGCTCTTTTTTGAGTGTAACTTTACTTTGGTTTTATCTTGGTAACAATCCCTCCATTATTTTGTCTTCTTGGTTTCATTTAAGGAATCGGAAGTTTCAATGTGTGAGATGCTTAATCAAATGATTTTATCATACTAACTGTAATGGCAAGATGTTAGTCATGTGTGATACATGGAATTTGTTTCACTTTCAACATATTTGTTGGTTTCCATATCCTAGCAGTTATGGTTTTCTTATTTTAAACCACTGTATTTATTGATTTTCAGTCTTTAGTATGCTTTTTATATTTTCAACGATAATGTACTGCCAAATTTTGTAAATAAATTGTTGTCGATTATTTCTGTGCTCTTACTTGACTGGAACTATTAGTAACCAGAAAGCTCAATTTTGGTAGTGCATAGTTACCATTACATTTTCCATTTTTGTTCTTTATTAATGTCCTTATTCAGAATAGTTATTGCCTTGTACACAAAAATCTCAGTCAATCTCGTCAATCTCTGAAACATAATCATAAAGCTCTGAATCTTTCCTTTAAGGTGAACAGCTCACATTTTTGTTGAGTATATTAAAATTGAGAATAAGTGTCTTGTTTACTTGATAAATGACCTGAATTGGCAAAATCCATAATATTAACATGGCATGTTCTTTTCAGGCAAGACCCTTGTTCAGAGATAGGAAAAAGTTTCCCCAGATGGTTGATCCTTTACTTGAAGGTCGATATCCGGTGAGAGGGTTATACCAAGCTCTTGCCATTGCTGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCTGTAATAGTTGATGTTGTTACAGCTCTAAATTACTTAGCTTCTCAGAAGTATGATCCTCACCTTCATCCAGCACAAAGCTCTAGAAGAAGTCCACCTTCTCAGGTAATGCAAAGGGATGATGATGATGAACGTAGACTTATTTTAACCACCGAGCATGTGACAGACAGATCATAAACTAGGAAAGTAGATTCTTTTTTTTTGCCTGTTCATATGCAGTGTCATTCATAGTTGCCAAATTTTGTTTCATGGGGAGATAGCAGGTGCCTCATCAAATGTAAGTCTCTCTCACAAAGGAATTTTCTCACTGTACATGCCAGCAGCTGCTTCTAATGTACTTATGATGCCTTTCTGTAGG